Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34781 * 120.00202 * 2 1 4 4 O 1.21612 * 119.99783 * 185.23400 * 3 2 1 5 5 C 1.47289 * 119.99497 * 5.23449 * 3 2 1 6 6 C 1.37957 * 126.81011 * 320.69832 * 5 3 2 7 7 N 1.34161 * 107.88584 * 179.97438 * 6 5 3 8 8 H 0.97002 * 125.16074 * 179.97438 * 7 6 5 9 9 N 1.39769 * 109.67661 * 0.02562 * 7 6 5 10 10 C 1.31365 * 109.07700 * 359.72592 * 9 7 6 11 11 C 1.48289 * 126.51173 * 180.24623 * 10 9 7 12 12 C 1.39390 * 120.12496 * 144.92178 * 11 10 9 13 13 C 1.38003 * 119.87004 * 179.74458 * 12 11 10 14 14 C 1.38327 * 120.12984 * 0.52960 * 13 12 11 15 15 C 1.38324 * 120.25139 * 359.74681 * 14 13 12 16 16 C 1.38007 * 120.12601 * 359.97438 * 15 14 13 17 17 C 1.46503 * 119.99838 * 180.02562 * 2 1 3 18 18 H 1.08998 * 110.63548 * 189.04812 * 17 2 1 19 19 C 1.55153 * 110.71979 * 65.90240 * 17 2 1 20 20 C 1.54908 * 101.58208 * 277.13554 * 19 17 2 21 21 N 1.47419 * 104.93140 * 322.94051 * 20 19 17 22 22 C 1.36938 * 125.64950 * 204.15607 * 21 20 19 23 23 H 1.08002 * 120.00135 * 180.02562 * 22 21 20 24 24 C 1.38816 * 119.99976 * 0.02562 * 22 21 20 25 25 N 1.31618 * 119.99706 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00005 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47166 * 59.99746 * 26 24 22 28 28 H 1.48503 * 109.46833 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46794 * 299.99575 * 26 24 22 30 30 C 1.47290 * 108.55819 * 24.15098 * 21 20 19 31 31 H 1.08994 * 109.47306 * 204.71699 * 1 2 3 32 32 H 1.09001 * 109.47199 * 324.71550 * 1 2 3 33 33 H 1.09001 * 109.47149 * 84.71212 * 1 2 3 34 34 H 1.07998 * 126.05783 * 0.02562 * 6 5 3 35 35 H 1.07994 * 120.06136 * 0.02562 * 12 11 10 36 36 H 1.08003 * 119.93865 * 180.27369 * 13 12 11 37 37 H 1.07996 * 119.87715 * 179.71772 * 14 13 12 38 38 H 1.08006 * 119.93940 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.06628 * 180.02562 * 16 15 14 40 40 H 1.08999 * 111.00109 * 159.06276 * 19 17 2 41 41 H 1.08992 * 111.03673 * 35.23163 * 19 17 2 42 42 H 1.09001 * 110.36026 * 81.83320 * 20 19 17 43 43 H 1.09001 * 110.36873 * 204.04295 * 20 19 17 44 44 H 0.97003 * 120.00125 * 179.97438 * 25 24 22 45 45 H 1.09005 * 109.85930 * 239.50298 * 30 21 20 46 46 H 1.08996 * 109.87270 * 118.36087 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3513 1.1693 -0.0961 5 6 1.4071 2.4401 0.1164 6 6 0.2024 2.7580 -0.4760 7 7 -0.1157 4.0107 -0.1162 8 1 -0.9150 4.4855 -0.3931 9 7 0.8798 4.5282 0.7173 10 6 1.8116 3.6183 0.8892 11 6 3.0408 3.7578 1.7069 12 6 3.5462 2.6610 2.4030 13 6 4.6935 2.7954 3.1581 14 6 5.3356 4.0183 3.2338 15 6 4.8354 5.1115 2.5498 16 6 3.6921 4.9875 1.7869 17 6 2.1975 -1.2688 -0.0006 18 1 3.2620 -1.0979 0.1599 19 6 1.9588 -2.0398 -1.3256 20 6 0.6088 -2.7428 -1.0376 21 7 0.6739 -3.1215 0.3857 22 6 -0.0347 -4.1342 0.9753 23 1 0.0835 -4.3329 2.0302 24 6 -0.9048 -4.9054 0.2169 25 7 -1.0491 -4.6630 -1.0686 26 14 -1.8718 -6.2864 1.0213 27 1 -2.7310 -5.7283 2.0962 28 1 -2.7225 -6.9534 0.0031 29 1 -0.9302 -7.2759 1.6039 30 6 1.6279 -2.2285 1.0652 31 1 -0.3633 -0.9335 0.4297 32 1 -0.3633 0.8389 0.5936 33 1 -0.3633 0.0947 -1.0233 34 1 -0.3815 2.1126 -1.1154 35 1 3.0434 1.7068 2.3478 36 1 5.0885 1.9452 3.6943 37 1 6.2306 4.1199 3.8296 38 1 5.3411 6.0639 2.6121 39 1 3.3026 5.8417 1.2529 40 1 2.7496 -2.7693 -1.5010 41 1 1.8701 -1.3531 -2.1673 42 1 -0.2204 -2.0567 -1.2101 43 1 0.5023 -3.6300 -1.6617 44 1 -1.6568 -5.2021 -1.5987 45 1 2.4347 -2.8146 1.5054 46 1 1.1149 -1.6593 1.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033306336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 108.964193 kcal Electronic energy + Delta-G solvation = -29642.921400 eV Core-core repulsion = 25728.452759 eV Total energy + Delta-G solvation = -3914.468640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35636 -39.42902 -38.90805 -37.23843 -34.40917 -32.96278 -32.27872 -31.03509 -30.35142 -29.81480 -29.08917 -27.72708 -26.37671 -24.49739 -23.63581 -23.05836 -22.35805 -20.76602 -20.11766 -19.90422 -18.98409 -17.72241 -16.95872 -16.85577 -16.63392 -15.77131 -15.44752 -15.27111 -14.77956 -14.73554 -14.51433 -14.01005 -13.86960 -13.76594 -13.48459 -13.24825 -12.74079 -12.65193 -12.60743 -12.26924 -11.95090 -11.75292 -11.55572 -11.37228 -11.28961 -11.09563 -10.98021 -10.90515 -10.80667 -10.35361 -10.18236 -10.14523 -9.88781 -9.60092 -9.53380 -8.94930 -8.93029 -8.70391 -8.46486 -8.20020 -6.89221 -5.69983 -3.12224 0.92683 1.40497 1.51221 2.25313 2.50476 3.18373 3.36972 3.42081 3.42633 3.43987 3.83308 4.18451 4.44930 4.49964 4.86011 4.91424 4.97898 5.06626 5.14594 5.31539 5.38717 5.41124 5.43526 5.51076 5.53578 5.56849 5.70610 5.80110 5.81841 5.91722 5.99638 6.08725 6.20902 6.31993 6.38392 6.42414 6.45791 6.50652 6.55480 6.60939 6.71817 6.90772 6.91908 7.06145 7.32959 7.44918 7.57979 7.76299 7.81630 8.31142 8.49731 9.16973 9.77263 10.42062 11.33126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002894 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.658666 B = 9672.377158 C =10391.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.590 5.590 3 C 0.588 3.412 4 O -0.539 6.539 5 C -0.268 4.268 6 C 0.103 3.897 7 N -0.467 5.467 8 H 0.443 0.557 9 N -0.284 5.284 10 C 0.166 3.834 11 C -0.017 4.017 12 C -0.066 4.066 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.090 4.090 17 C 0.129 3.871 18 H 0.099 0.901 19 C -0.155 4.155 20 C 0.148 3.852 21 N -0.602 5.602 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.126 3.874 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.192 0.808 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.105 0.895 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.917 18.625 2.828 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C 0.376 3.624 4 O -0.417 6.417 5 C -0.283 4.283 6 C -0.046 4.046 7 N -0.173 5.173 8 H 0.288 0.712 9 N -0.105 5.105 10 C -0.003 4.003 11 C -0.019 4.019 12 C -0.086 4.086 13 C -0.138 4.138 14 C -0.129 4.129 15 C -0.146 4.146 16 C -0.109 4.109 17 C 0.026 3.974 18 H 0.117 0.883 19 C -0.194 4.194 20 C 0.023 3.977 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.000 4.000 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.208 0.792 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.123 0.877 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.976 19.606 2.986 20.447 hybrid contribution -1.026 -1.329 -0.158 1.686 sum 3.950 18.277 2.828 18.912 Atomic orbital electron populations 1.22164 0.79616 1.04743 1.00996 1.47673 1.07100 1.05257 1.72111 1.17197 0.86547 0.82204 0.76475 1.90773 1.13426 1.87074 1.50399 1.21309 0.98642 0.97330 1.11027 1.23254 0.95588 0.87488 0.98294 1.45920 1.20605 1.11639 1.39098 0.71246 1.77274 0.99341 1.21140 1.12764 1.21754 0.93417 0.89709 0.95383 1.17648 0.92237 0.94517 0.97476 1.21128 0.95574 0.97504 0.94346 1.21065 0.95481 0.97747 0.99549 1.21232 0.99610 0.93000 0.99016 1.21015 0.96547 0.98940 0.98139 1.21139 0.95230 0.96172 0.98355 1.22125 0.96185 0.81877 0.97245 0.88272 1.23368 1.01770 0.98806 0.95492 1.22038 0.90003 0.99051 0.86584 1.44601 1.47757 1.35364 1.05197 1.19018 1.16680 1.06150 0.93252 0.90565 1.24765 1.00037 0.99783 0.95893 1.69790 1.40352 1.41752 1.05112 0.86168 0.79613 0.81872 0.77924 1.21258 1.21623 1.21175 1.21670 0.93220 0.91361 0.93784 0.87903 0.92208 0.92991 0.79160 0.85902 0.85596 0.85991 0.85861 0.85799 0.91166 0.92141 0.96500 0.87731 0.93700 0.94786 0.95373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 7.08 59.85 0.42 1.42 16 2 N -0.59 -9.59 2.84 -173.15 -0.49 -10.08 16 3 C 0.59 9.71 6.25 -12.58 -0.08 9.63 16 4 O -0.54 -10.34 15.03 5.27 0.08 -10.26 16 5 C -0.27 -3.81 5.46 -102.95 -0.56 -4.37 16 6 C 0.10 1.09 9.75 -16.64 -0.16 0.92 16 7 N -0.47 -4.47 7.20 30.81 0.22 -4.24 16 8 H 0.44 2.49 8.96 -182.85 -1.64 0.85 16 9 N -0.28 -3.67 12.63 34.57 0.44 -3.23 16 10 C 0.17 2.38 6.94 -80.56 -0.56 1.82 16 11 C -0.02 -0.24 5.74 -104.91 -0.60 -0.84 16 12 C -0.07 -0.92 8.31 -39.24 -0.33 -1.25 16 13 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 14 C -0.11 -1.13 10.04 -39.52 -0.40 -1.53 16 15 C -0.13 -1.32 10.03 -39.63 -0.40 -1.72 16 16 C -0.09 -1.08 9.76 -39.24 -0.38 -1.47 16 17 C 0.13 2.32 3.54 -66.10 -0.23 2.09 16 18 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 19 C -0.15 -2.92 6.68 -24.59 -0.16 -3.08 16 20 C 0.15 3.34 5.04 -2.53 -0.01 3.33 16 21 N -0.60 -14.41 2.85 -169.86 -0.48 -14.90 16 22 C -0.22 -5.90 10.28 -15.06 -0.15 -6.05 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 25 N -0.92 -25.59 10.09 55.49 0.56 -25.03 16 26 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 C 0.13 2.54 6.09 -2.92 -0.02 2.52 16 31 H 0.10 1.87 5.19 -51.93 -0.27 1.60 16 32 H 0.06 0.75 5.93 -51.93 -0.31 0.44 16 33 H 0.05 0.69 7.10 -51.93 -0.37 0.32 16 34 H 0.19 1.48 6.43 -52.49 -0.34 1.14 16 35 H 0.12 1.85 6.72 -52.49 -0.35 1.49 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.39 6.02 -51.93 -0.31 0.08 16 43 H 0.11 2.74 5.87 -51.93 -0.30 2.43 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.57 7.55 -51.93 -0.39 0.18 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -32.45 367.66 -10.44 -42.89 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.16 Total: 3.74 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -4.12 Total: -0.74 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.24 Total: -57.48 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -10.44 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033306336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.856 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds