Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34781 * 120.00202 * 2 1 4 4 O 1.21612 * 119.99783 * 185.23400 * 3 2 1 5 5 C 1.47289 * 119.99497 * 5.23449 * 3 2 1 6 6 C 1.37957 * 126.81011 * 320.69832 * 5 3 2 7 7 N 1.34161 * 107.88584 * 179.97438 * 6 5 3 8 8 H 0.97002 * 125.16074 * 179.97438 * 7 6 5 9 9 N 1.39769 * 109.67661 * 0.02562 * 7 6 5 10 10 C 1.31365 * 109.07700 * 359.72592 * 9 7 6 11 11 C 1.48289 * 126.51173 * 180.24623 * 10 9 7 12 12 C 1.39390 * 120.12496 * 144.92178 * 11 10 9 13 13 C 1.38003 * 119.87004 * 179.74458 * 12 11 10 14 14 C 1.38327 * 120.12984 * 0.52960 * 13 12 11 15 15 C 1.38324 * 120.25139 * 359.74681 * 14 13 12 16 16 C 1.38007 * 120.12601 * 359.97438 * 15 14 13 17 17 C 1.46503 * 119.99838 * 180.02562 * 2 1 3 18 18 H 1.08998 * 110.63548 * 189.04812 * 17 2 1 19 19 C 1.55153 * 110.71979 * 65.90240 * 17 2 1 20 20 C 1.54908 * 101.58208 * 277.13554 * 19 17 2 21 21 N 1.47419 * 104.93140 * 322.94051 * 20 19 17 22 22 C 1.36938 * 125.64950 * 204.15607 * 21 20 19 23 23 H 1.08002 * 120.00135 * 180.02562 * 22 21 20 24 24 C 1.38816 * 119.99976 * 0.02562 * 22 21 20 25 25 N 1.31618 * 119.99706 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00005 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47166 * 59.99746 * 26 24 22 28 28 H 1.48503 * 109.46833 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46794 * 299.99575 * 26 24 22 30 30 C 1.47290 * 108.55819 * 24.15098 * 21 20 19 31 31 H 1.08994 * 109.47306 * 204.71699 * 1 2 3 32 32 H 1.09001 * 109.47199 * 324.71550 * 1 2 3 33 33 H 1.09001 * 109.47149 * 84.71212 * 1 2 3 34 34 H 1.07998 * 126.05783 * 0.02562 * 6 5 3 35 35 H 1.07994 * 120.06136 * 0.02562 * 12 11 10 36 36 H 1.08003 * 119.93865 * 180.27369 * 13 12 11 37 37 H 1.07996 * 119.87715 * 179.71772 * 14 13 12 38 38 H 1.08006 * 119.93940 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.06628 * 180.02562 * 16 15 14 40 40 H 1.08999 * 111.00109 * 159.06276 * 19 17 2 41 41 H 1.08992 * 111.03673 * 35.23163 * 19 17 2 42 42 H 1.09001 * 110.36026 * 81.83320 * 20 19 17 43 43 H 1.09001 * 110.36873 * 204.04295 * 20 19 17 44 44 H 0.97003 * 120.00125 * 179.97438 * 25 24 22 45 45 H 1.09005 * 109.85930 * 239.50298 * 30 21 20 46 46 H 1.08996 * 109.87270 * 118.36087 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3513 1.1693 -0.0961 5 6 1.4071 2.4401 0.1164 6 6 0.2024 2.7580 -0.4760 7 7 -0.1157 4.0107 -0.1162 8 1 -0.9150 4.4855 -0.3931 9 7 0.8798 4.5282 0.7173 10 6 1.8116 3.6183 0.8892 11 6 3.0408 3.7578 1.7069 12 6 3.5462 2.6610 2.4030 13 6 4.6935 2.7954 3.1581 14 6 5.3356 4.0183 3.2338 15 6 4.8354 5.1115 2.5498 16 6 3.6921 4.9875 1.7869 17 6 2.1975 -1.2688 -0.0006 18 1 3.2620 -1.0979 0.1599 19 6 1.9588 -2.0398 -1.3256 20 6 0.6088 -2.7428 -1.0376 21 7 0.6739 -3.1215 0.3857 22 6 -0.0347 -4.1342 0.9753 23 1 0.0835 -4.3329 2.0302 24 6 -0.9048 -4.9054 0.2169 25 7 -1.0491 -4.6630 -1.0686 26 14 -1.8718 -6.2864 1.0213 27 1 -2.7310 -5.7283 2.0962 28 1 -2.7225 -6.9534 0.0031 29 1 -0.9302 -7.2759 1.6039 30 6 1.6279 -2.2285 1.0652 31 1 -0.3633 -0.9335 0.4297 32 1 -0.3633 0.8389 0.5936 33 1 -0.3633 0.0947 -1.0233 34 1 -0.3815 2.1126 -1.1154 35 1 3.0434 1.7068 2.3478 36 1 5.0885 1.9452 3.6943 37 1 6.2306 4.1199 3.8296 38 1 5.3411 6.0639 2.6121 39 1 3.3026 5.8417 1.2529 40 1 2.7496 -2.7693 -1.5010 41 1 1.8701 -1.3531 -2.1673 42 1 -0.2204 -2.0567 -1.2101 43 1 0.5023 -3.6300 -1.6617 44 1 -1.6568 -5.2021 -1.5987 45 1 2.4347 -2.8146 1.5054 46 1 1.1149 -1.6593 1.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033306336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 89.633080 kcal Electronic energy + Delta-G solvation = -29643.759660 eV Core-core repulsion = 25728.452759 eV Total energy + Delta-G solvation = -3915.306900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33458 -40.77606 -39.77757 -38.77958 -35.93424 -34.05121 -33.85650 -31.99150 -31.58828 -30.81216 -30.59764 -29.26614 -27.79504 -26.27014 -24.55963 -24.17197 -23.36006 -22.07952 -21.70196 -20.95508 -20.24326 -18.93427 -18.72519 -18.00161 -17.67198 -17.05240 -16.65962 -16.48941 -16.24379 -15.81653 -15.65603 -15.54804 -15.23140 -14.92324 -14.43742 -14.25009 -14.12397 -14.00077 -13.70076 -13.59860 -13.52860 -13.37471 -13.03104 -12.90806 -12.73782 -12.38297 -12.28938 -12.16644 -12.04969 -11.96943 -11.88641 -11.75686 -11.39415 -11.07760 -10.87845 -10.67769 -9.92318 -9.84414 -9.57069 -9.37148 -8.83982 -7.72742 -5.16413 0.00889 0.51317 0.57675 1.24373 1.50423 1.52099 1.58292 1.68109 1.97759 2.23955 2.52591 2.92973 3.24438 3.37461 3.58971 3.70503 3.88706 3.93850 4.02947 4.09040 4.13591 4.23914 4.28292 4.29811 4.38235 4.38893 4.56629 4.65223 4.68233 4.69992 4.73802 4.90880 4.93584 4.95193 5.07303 5.12908 5.15190 5.17585 5.49877 5.53981 5.58453 5.60973 5.62280 5.72024 5.86951 6.06341 6.20095 6.35392 6.40330 6.51443 7.15392 7.22941 7.80998 8.45400 9.27931 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002894 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.658666 B = 9672.377158 C =10391.684951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.593 3.407 4 O -0.572 6.572 5 C -0.306 4.306 6 C 0.131 3.869 7 N -0.446 5.446 8 H 0.462 0.538 9 N -0.298 5.298 10 C 0.153 3.847 11 C -0.041 4.041 12 C -0.089 4.089 13 C -0.131 4.131 14 C -0.107 4.107 15 C -0.124 4.124 16 C -0.100 4.100 17 C 0.142 3.858 18 H 0.100 0.900 19 C -0.141 4.141 20 C 0.156 3.844 21 N -0.617 5.617 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.059 4.059 25 N -0.943 5.943 26 Si 0.974 3.026 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.282 1.282 30 C 0.129 3.871 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.224 0.776 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.013 0.987 43 H 0.069 0.931 44 H 0.247 0.753 45 H 0.034 0.966 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 20.513 3.167 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.322 5.322 3 C 0.383 3.617 4 O -0.452 6.452 5 C -0.321 4.321 6 C -0.021 4.021 7 N -0.154 5.154 8 H 0.311 0.689 9 N -0.119 5.119 10 C -0.015 4.015 11 C -0.043 4.043 12 C -0.109 4.109 13 C -0.148 4.148 14 C -0.125 4.125 15 C -0.142 4.142 16 C -0.119 4.119 17 C 0.038 3.962 18 H 0.118 0.882 19 C -0.180 4.180 20 C 0.032 3.968 21 N -0.344 5.344 22 C -0.364 4.364 23 H 0.095 0.905 24 C -0.252 4.252 25 N -0.593 5.593 26 Si 0.803 3.197 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.208 1.208 30 C 0.003 3.997 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.156 0.844 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.915 21.541 3.342 22.346 hybrid contribution -1.009 -1.840 -0.233 2.111 sum 3.906 19.701 3.109 20.323 Atomic orbital electron populations 1.22154 0.78550 1.03853 1.02348 1.47648 1.07640 1.04617 1.72246 1.17438 0.86192 0.82724 0.75333 1.90741 1.14982 1.87550 1.51906 1.21200 1.00524 0.96667 1.13700 1.23613 0.94132 0.87636 0.96682 1.45960 1.20466 1.11362 1.37565 0.68908 1.77225 0.99800 1.21254 1.13627 1.21916 0.93896 0.89971 0.95724 1.17888 0.92932 0.95323 0.98183 1.21088 0.96846 0.96855 0.96087 1.21325 0.95001 0.99182 0.99342 1.21612 1.00178 0.92105 0.98641 1.21423 0.95698 1.00318 0.96741 1.21344 0.95919 0.95700 0.98932 1.21845 0.96282 0.82310 0.95780 0.88227 1.23216 0.99529 0.98807 0.96467 1.21798 0.91858 0.97669 0.85499 1.44774 1.48081 1.35481 1.06055 1.19324 1.16835 1.06749 0.93525 0.90527 1.25485 1.01252 1.01982 0.96487 1.70021 1.40781 1.42459 1.06044 0.85214 0.78233 0.79238 0.76976 1.20551 1.22073 1.20842 1.21704 0.92431 0.91250 0.94271 0.91281 0.89877 0.91039 0.75979 0.88089 0.84377 0.82821 0.82692 0.85081 0.91171 0.90556 0.96887 0.91302 0.94357 0.94836 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 7.08 127.77 0.90 2.97 16 2 N -0.59 -18.87 2.84 -819.99 -2.33 -21.19 16 3 C 0.59 19.42 6.25 86.62 0.54 19.97 16 4 O -0.57 -22.23 15.03 -4.07 -0.06 -22.29 16 5 C -0.31 -8.40 5.46 -18.78 -0.10 -8.51 16 6 C 0.13 2.41 9.75 84.27 0.82 3.24 16 7 N -0.45 -7.37 7.20 -56.43 -0.41 -7.78 16 8 H 0.46 3.70 8.96 -213.53 -1.91 1.79 16 9 N -0.30 -7.27 12.63 -44.53 -0.56 -7.83 16 10 C 0.15 4.32 6.94 44.07 0.31 4.63 16 11 C -0.04 -1.17 5.74 -20.05 -0.12 -1.28 16 12 C -0.09 -2.56 8.31 22.49 0.19 -2.37 16 13 C -0.13 -3.03 10.03 22.23 0.22 -2.81 16 14 C -0.11 -1.98 10.04 22.31 0.22 -1.76 16 15 C -0.12 -2.29 10.03 22.24 0.22 -2.07 16 16 C -0.10 -2.32 9.76 22.49 0.22 -2.10 16 17 C 0.14 5.11 3.54 46.18 0.16 5.27 16 18 H 0.10 3.63 7.08 -2.39 -0.02 3.61 16 19 C -0.14 -5.27 6.68 31.98 0.21 -5.05 16 20 C 0.16 7.16 5.04 86.86 0.44 7.60 16 21 N -0.62 -29.96 2.85 -691.32 -1.97 -31.92 16 22 C -0.24 -12.61 10.28 84.03 0.86 -11.75 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 25 N -0.94 -53.33 10.09 21.65 0.22 -53.11 16 26 Si 0.97 44.15 29.55 68.60 2.03 46.18 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 30 C 0.13 5.26 6.09 86.68 0.53 5.79 16 31 H 0.07 2.49 5.19 -2.39 -0.01 2.48 16 32 H 0.08 1.93 5.93 -2.39 -0.01 1.91 16 33 H 0.07 1.72 7.10 -2.39 -0.02 1.71 16 34 H 0.22 2.57 6.43 -2.91 -0.02 2.55 16 35 H 0.10 3.24 6.72 -2.91 -0.02 3.22 16 36 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.01 0.61 6.02 -2.39 -0.01 0.60 16 43 H 0.07 3.70 5.87 -2.39 -0.01 3.68 16 44 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 45 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.03 1.18 7.55 -2.39 -0.02 1.16 16 Total: -1.00 -72.11 367.66 2.14 -69.97 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.88 Total: 18.96 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.10 Total: 9.02 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.05 Total: -121.85 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.11 2.14 -69.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033306336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.605 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds