Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34768 * 120.00010 * 2 1 4 4 O 1.21582 * 120.00103 * 184.33958 * 3 2 1 5 5 C 1.47660 * 120.00052 * 4.33695 * 3 2 1 6 6 C 1.39712 * 120.08082 * 147.89419 * 5 3 2 7 7 C 1.37720 * 119.92320 * 180.02562 * 6 5 3 8 8 C 1.39047 * 120.07480 * 0.02562 * 7 6 5 9 9 N 1.39870 * 119.91727 * 179.97438 * 8 7 6 10 10 C 1.37157 * 126.48326 * 180.26434 * 9 8 7 11 11 C 1.34629 * 106.82919 * 180.11017 * 10 9 8 12 12 N 1.34147 * 108.21270 * 359.64666 * 11 10 9 13 13 C 1.30489 * 109.37043 * 0.22151 * 12 11 10 14 14 C 1.39040 * 120.16230 * 0.23795 * 8 7 6 15 15 C 1.37722 * 120.07972 * 359.48131 * 14 8 7 16 16 C 1.46498 * 119.99854 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.64228 * 181.69101 * 16 2 1 18 18 C 1.55160 * 110.72204 * 305.02430 * 16 2 1 19 19 C 1.54905 * 101.58418 * 153.86748 * 18 16 2 20 20 N 1.47431 * 104.82945 * 322.98946 * 19 18 16 21 21 C 1.36941 * 125.64639 * 204.09635 * 20 19 18 22 22 H 1.07997 * 119.99695 * 180.02562 * 21 20 19 23 23 C 1.38806 * 120.00178 * 0.03940 * 21 20 19 24 24 N 1.31622 * 119.99974 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47152 * 89.99899 * 25 23 21 27 27 H 1.48498 * 109.47032 * 209.99970 * 25 23 21 28 28 H 1.48497 * 109.46932 * 330.00263 * 25 23 21 29 29 C 1.47018 * 108.70401 * 24.12951 * 20 19 18 30 30 H 1.08993 * 109.46827 * 94.63030 * 1 2 3 31 31 H 1.08999 * 109.46936 * 214.63691 * 1 2 3 32 32 H 1.08996 * 109.46939 * 334.63092 * 1 2 3 33 33 H 1.08003 * 120.03752 * 359.97438 * 6 5 3 34 34 H 1.07993 * 119.96526 * 179.97438 * 7 6 5 35 35 H 1.08001 * 126.58502 * 359.97438 * 10 9 8 36 36 H 1.07998 * 125.89028 * 179.90029 * 11 10 9 37 37 H 1.08001 * 125.72388 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.95986 * 179.74506 * 14 8 7 39 39 H 1.08002 * 120.04089 * 180.23397 * 15 14 8 40 40 H 1.09000 * 111.00639 * 271.94505 * 18 16 2 41 41 H 1.08999 * 111.00244 * 35.78979 * 18 16 2 42 42 H 1.09001 * 110.36881 * 204.15639 * 19 18 16 43 43 H 1.08993 * 110.46371 * 81.87538 * 19 18 16 44 44 H 0.97000 * 119.99670 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.88453 * 239.52578 * 29 20 19 46 46 H 1.08997 * 109.88360 * 118.35617 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3522 1.1687 -0.0797 5 6 1.4038 2.4441 0.0967 6 6 1.9829 3.5381 0.7445 7 6 1.2942 4.7274 0.8333 8 6 0.0237 4.8399 0.2796 9 7 -0.6731 6.0491 0.3721 10 6 -1.9278 6.3070 -0.1182 11 6 -2.2100 7.5875 0.1870 12 7 -1.1640 8.1003 0.8521 13 6 -0.2371 7.1894 0.9697 14 6 -0.5580 3.7516 -0.3611 15 6 0.1272 2.5609 -0.4587 16 6 2.1976 -1.2687 0.0006 17 1 3.2726 -1.0917 0.0306 18 6 1.7507 -2.1601 1.1894 19 6 2.0638 -3.5780 0.6499 20 7 1.7324 -3.5173 -0.7854 21 6 1.4003 -4.5867 -1.5737 22 1 1.1737 -4.4373 -2.6189 23 6 1.3547 -5.8627 -1.0291 24 7 1.6301 -6.0448 0.2450 25 14 0.9023 -7.3216 -2.1046 26 1 2.1334 -7.8923 -2.7080 27 1 0.2305 -8.3564 -1.2781 28 1 -0.0164 -6.8757 -3.1827 29 6 1.8183 -2.1188 -1.2304 30 1 -0.3633 -0.0830 -1.0243 31 1 -0.3633 -0.8455 0.5841 32 1 -0.3633 0.9285 0.4403 33 1 2.9692 3.4510 1.1760 34 1 1.7409 5.5734 1.3343 35 1 -2.5659 5.6161 -0.6493 36 1 -3.1229 8.1102 -0.0576 37 1 0.7164 7.3195 1.4599 38 1 -1.5466 3.8413 -0.7865 39 1 -0.3237 1.7171 -0.9598 40 1 2.3372 -1.9434 2.0822 41 1 0.6850 -2.0434 1.3862 42 1 1.4430 -4.3204 1.1515 43 1 3.1194 -3.8129 0.7859 44 1 1.5986 -6.9365 0.6254 45 1 0.8541 -1.7944 -1.6219 46 1 2.5848 -2.0207 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033308056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 120.411787 kcal Electronic energy + Delta-G solvation = -28501.230632 eV Core-core repulsion = 24587.258397 eV Total energy + Delta-G solvation = -3913.972235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.76221 -40.68422 -38.89573 -37.34781 -35.20921 -34.41003 -32.39621 -31.73013 -30.29384 -29.82209 -29.12662 -27.66522 -26.90361 -24.91774 -24.10386 -23.68758 -21.79506 -21.07894 -20.63871 -20.28506 -19.36511 -18.84139 -17.57001 -17.05433 -16.44376 -15.95786 -15.78443 -15.54114 -15.04315 -14.91486 -14.57900 -14.36861 -14.25686 -14.11612 -14.11437 -13.73861 -13.34609 -13.26806 -13.03613 -12.80844 -12.49444 -12.11130 -11.90768 -11.63999 -11.43001 -11.11156 -10.99828 -10.91103 -10.86060 -10.55901 -10.47747 -10.16696 -9.90088 -9.84798 -9.62955 -9.54032 -9.17638 -8.74481 -8.71760 -8.47056 -6.91370 -5.71676 -3.14229 0.11812 0.77452 1.68757 2.17381 2.62386 2.71989 2.94801 3.36067 3.37439 3.41342 3.42903 4.06190 4.13554 4.23104 4.27135 4.40667 4.44442 4.67156 4.71108 4.93503 4.97626 5.12611 5.16729 5.25667 5.33750 5.39388 5.39865 5.44845 5.48400 5.58588 5.63608 5.66539 5.83656 5.85709 5.92957 6.09669 6.13457 6.26160 6.29613 6.46342 6.48844 6.61823 6.75679 6.87446 7.39704 7.45797 7.52845 7.55824 7.77420 8.11890 8.28470 9.14906 9.75454 10.39174 11.32063 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.002025 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.022138 B =13823.953916 C =14406.258448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.591 5.591 3 C 0.554 3.446 4 O -0.537 6.537 5 C -0.130 4.130 6 C -0.035 4.035 7 C -0.142 4.142 8 C 0.151 3.849 9 N -0.412 5.412 10 C -0.052 4.052 11 C -0.023 4.023 12 N -0.485 5.485 13 C 0.191 3.809 14 C -0.141 4.141 15 C -0.072 4.072 16 C 0.126 3.874 17 H 0.105 0.895 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.916 3.084 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.210 0.790 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.016 0.984 44 H 0.253 0.747 45 H 0.027 0.973 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 23.135 2.283 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.322 5.322 3 C 0.343 3.657 4 O -0.415 6.415 5 C -0.133 4.133 6 C -0.054 4.054 7 C -0.161 4.161 8 C 0.058 3.942 9 N -0.091 5.091 10 C -0.182 4.182 11 C -0.168 4.168 12 N -0.202 5.202 13 C -0.090 4.090 14 C -0.161 4.161 15 C -0.091 4.091 16 C 0.023 3.977 17 H 0.123 0.877 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.329 5.329 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.746 3.254 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.193 0.807 37 H 0.227 0.773 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.126 23.636 2.535 24.549 hybrid contribution -0.349 -1.576 -0.931 1.863 sum -6.475 22.061 1.604 23.047 Atomic orbital electron populations 1.22455 0.80097 1.03915 1.02199 1.47744 1.06982 1.05889 1.71562 1.18182 0.87105 0.83369 0.77087 1.90796 1.13431 1.87083 1.50146 1.20088 0.95423 0.95097 1.02735 1.21093 0.99464 0.90155 0.94697 1.20759 0.93103 0.99341 1.02939 1.18015 0.92452 0.84585 0.99186 1.43247 1.14041 1.09896 1.41927 1.22843 0.87795 0.99992 1.07542 1.22404 0.99362 0.92501 1.02561 1.70343 1.01577 1.30129 1.18172 1.25353 1.01353 0.81013 1.01315 1.20813 1.01409 0.91747 1.02112 1.21889 0.92878 0.97587 0.96712 1.22323 0.97131 0.80960 0.97308 0.87683 1.23407 1.00712 0.98739 0.96354 1.21950 0.99023 0.91732 0.84532 1.44436 1.81053 1.00707 1.06669 1.19059 1.38983 0.84953 0.92117 0.90453 1.24800 1.01949 0.97435 0.96436 1.69777 1.55419 1.20879 1.10961 0.86055 0.78000 0.82258 0.79060 1.21577 1.21618 1.20693 1.21503 0.97980 0.86292 0.93895 0.91789 0.90011 0.89857 0.83731 0.84428 0.80309 0.80739 0.77348 0.84506 0.82625 0.91951 0.91550 0.87201 0.96627 0.93637 0.95499 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 7.81 59.85 0.47 1.07 16 2 N -0.59 -8.49 2.88 -173.01 -0.50 -8.99 16 3 C 0.55 8.04 7.43 -12.42 -0.09 7.95 16 4 O -0.54 -9.68 16.13 5.29 0.09 -9.60 16 5 C -0.13 -1.40 5.47 -104.95 -0.57 -1.98 16 6 C -0.03 -0.32 9.59 -39.22 -0.38 -0.70 16 7 C -0.14 -1.06 9.45 -39.47 -0.37 -1.44 16 8 C 0.15 1.20 6.64 -83.59 -0.55 0.64 16 9 N -0.41 -3.33 2.98 -62.06 -0.19 -3.52 16 10 C -0.05 -0.38 10.85 -16.45 -0.18 -0.56 16 11 C -0.02 -0.19 11.85 -17.82 -0.21 -0.40 16 12 N -0.49 -4.96 11.24 -14.46 -0.16 -5.12 16 13 C 0.19 1.58 11.91 -89.58 -1.07 0.51 16 14 C -0.14 -1.03 9.45 -39.47 -0.37 -1.40 16 15 C -0.07 -0.60 7.42 -39.22 -0.29 -0.90 16 16 C 0.13 2.24 3.36 -66.09 -0.22 2.01 16 17 H 0.11 2.03 7.00 -51.93 -0.36 1.67 16 18 C -0.15 -2.78 6.62 -24.58 -0.16 -2.95 16 19 C 0.15 3.59 5.89 -2.53 -0.01 3.58 16 20 N -0.60 -15.00 3.39 -170.08 -0.58 -15.58 16 21 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.13 2.68 6.88 -3.07 -0.02 2.66 16 30 H 0.06 0.63 7.00 -51.93 -0.36 0.27 16 31 H 0.08 0.97 6.07 -51.93 -0.32 0.65 16 32 H 0.08 0.70 4.71 -51.93 -0.24 0.45 16 33 H 0.14 1.30 7.95 -52.48 -0.42 0.88 16 34 H 0.14 0.68 6.75 -52.49 -0.35 0.33 16 35 H 0.18 0.77 7.13 -52.49 -0.37 0.40 16 36 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.21 1.02 7.05 -52.49 -0.37 0.65 16 38 H 0.14 0.69 6.79 -52.49 -0.36 0.33 16 39 H 0.16 1.13 4.81 -52.49 -0.25 0.87 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.14 6.07 -51.93 -0.32 0.82 16 42 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.53 6.82 -51.93 -0.35 0.17 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -33.96 366.62 -10.19 -44.16 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.62 Total: 0.68 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -4.29 Total: 1.51 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.86 Total: -58.86 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.96 -10.19 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.571 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds