Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34768 * 120.00010 * 2 1 4 4 O 1.21582 * 120.00103 * 184.33958 * 3 2 1 5 5 C 1.47660 * 120.00052 * 4.33695 * 3 2 1 6 6 C 1.39712 * 120.08082 * 147.89419 * 5 3 2 7 7 C 1.37720 * 119.92320 * 180.02562 * 6 5 3 8 8 C 1.39047 * 120.07480 * 0.02562 * 7 6 5 9 9 N 1.39870 * 119.91727 * 179.97438 * 8 7 6 10 10 C 1.37157 * 126.48326 * 180.26434 * 9 8 7 11 11 C 1.34629 * 106.82919 * 180.11017 * 10 9 8 12 12 N 1.34147 * 108.21270 * 359.64666 * 11 10 9 13 13 C 1.30489 * 109.37043 * 0.22151 * 12 11 10 14 14 C 1.39040 * 120.16230 * 0.23795 * 8 7 6 15 15 C 1.37722 * 120.07972 * 359.48131 * 14 8 7 16 16 C 1.46498 * 119.99854 * 179.97438 * 2 1 3 17 17 H 1.08995 * 110.64228 * 181.69101 * 16 2 1 18 18 C 1.55160 * 110.72204 * 305.02430 * 16 2 1 19 19 C 1.54905 * 101.58418 * 153.86748 * 18 16 2 20 20 N 1.47431 * 104.82945 * 322.98946 * 19 18 16 21 21 C 1.36941 * 125.64639 * 204.09635 * 20 19 18 22 22 H 1.07997 * 119.99695 * 180.02562 * 21 20 19 23 23 C 1.38806 * 120.00178 * 0.03940 * 21 20 19 24 24 N 1.31622 * 119.99974 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47152 * 89.99899 * 25 23 21 27 27 H 1.48498 * 109.47032 * 209.99970 * 25 23 21 28 28 H 1.48497 * 109.46932 * 330.00263 * 25 23 21 29 29 C 1.47018 * 108.70401 * 24.12951 * 20 19 18 30 30 H 1.08993 * 109.46827 * 94.63030 * 1 2 3 31 31 H 1.08999 * 109.46936 * 214.63691 * 1 2 3 32 32 H 1.08996 * 109.46939 * 334.63092 * 1 2 3 33 33 H 1.08003 * 120.03752 * 359.97438 * 6 5 3 34 34 H 1.07993 * 119.96526 * 179.97438 * 7 6 5 35 35 H 1.08001 * 126.58502 * 359.97438 * 10 9 8 36 36 H 1.07998 * 125.89028 * 179.90029 * 11 10 9 37 37 H 1.08001 * 125.72388 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.95986 * 179.74506 * 14 8 7 39 39 H 1.08002 * 120.04089 * 180.23397 * 15 14 8 40 40 H 1.09000 * 111.00639 * 271.94505 * 18 16 2 41 41 H 1.08999 * 111.00244 * 35.78979 * 18 16 2 42 42 H 1.09001 * 110.36881 * 204.15639 * 19 18 16 43 43 H 1.08993 * 110.46371 * 81.87538 * 19 18 16 44 44 H 0.97000 * 119.99670 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.88453 * 239.52578 * 29 20 19 46 46 H 1.08997 * 109.88360 * 118.35617 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3522 1.1687 -0.0797 5 6 1.4038 2.4441 0.0967 6 6 1.9829 3.5381 0.7445 7 6 1.2942 4.7274 0.8333 8 6 0.0237 4.8399 0.2796 9 7 -0.6731 6.0491 0.3721 10 6 -1.9278 6.3070 -0.1182 11 6 -2.2100 7.5875 0.1870 12 7 -1.1640 8.1003 0.8521 13 6 -0.2371 7.1894 0.9697 14 6 -0.5580 3.7516 -0.3611 15 6 0.1272 2.5609 -0.4587 16 6 2.1976 -1.2687 0.0006 17 1 3.2726 -1.0917 0.0306 18 6 1.7507 -2.1601 1.1894 19 6 2.0638 -3.5780 0.6499 20 7 1.7324 -3.5173 -0.7854 21 6 1.4003 -4.5867 -1.5737 22 1 1.1737 -4.4373 -2.6189 23 6 1.3547 -5.8627 -1.0291 24 7 1.6301 -6.0448 0.2450 25 14 0.9023 -7.3216 -2.1046 26 1 2.1334 -7.8923 -2.7080 27 1 0.2305 -8.3564 -1.2781 28 1 -0.0164 -6.8757 -3.1827 29 6 1.8183 -2.1188 -1.2304 30 1 -0.3633 -0.0830 -1.0243 31 1 -0.3633 -0.8455 0.5841 32 1 -0.3633 0.9285 0.4403 33 1 2.9692 3.4510 1.1760 34 1 1.7409 5.5734 1.3343 35 1 -2.5659 5.6161 -0.6493 36 1 -3.1229 8.1102 -0.0576 37 1 0.7164 7.3195 1.4599 38 1 -1.5466 3.8413 -0.7865 39 1 -0.3237 1.7171 -0.9598 40 1 2.3372 -1.9434 2.0822 41 1 0.6850 -2.0434 1.3862 42 1 1.4430 -4.3204 1.1515 43 1 3.1194 -3.8129 0.7859 44 1 1.5986 -6.9365 0.6254 45 1 0.8541 -1.7944 -1.6219 46 1 2.5848 -2.0207 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033308056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 101.637217 kcal Electronic energy + Delta-G solvation = -28502.044759 eV Core-core repulsion = 24587.258397 eV Total energy + Delta-G solvation = -3914.786362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.32835 -41.67944 -39.84421 -38.80355 -36.49391 -35.23009 -34.06856 -32.50552 -31.34855 -30.77406 -30.30221 -29.02848 -28.06029 -26.56970 -25.10352 -24.33987 -22.67211 -22.16141 -21.70365 -21.50414 -20.48233 -19.55990 -18.97765 -18.55192 -17.66885 -16.78632 -16.64188 -16.48135 -16.26220 -15.95354 -15.80314 -15.74128 -15.06451 -14.92963 -14.85260 -14.68140 -14.38201 -14.34384 -14.02911 -13.89217 -13.71361 -13.55029 -13.43408 -12.98599 -12.86634 -12.72262 -12.44935 -12.18024 -12.02922 -12.01446 -11.83793 -11.68256 -11.40043 -11.17864 -10.98531 -10.75902 -10.16221 -9.79853 -9.69647 -9.33177 -8.92711 -7.78609 -5.24275 -0.55708 0.18260 1.04856 1.47633 1.49500 1.57979 1.61149 1.71121 1.85787 2.10759 2.49645 2.65303 3.31795 3.35041 3.49810 3.63158 3.70271 3.74687 3.83467 3.90242 3.92980 4.07480 4.11037 4.19619 4.21647 4.45934 4.50970 4.52531 4.59411 4.60996 4.63222 4.81344 4.84122 4.86764 4.90049 4.96625 5.03611 5.06545 5.18872 5.35737 5.44816 5.45671 5.53345 5.57802 5.73113 5.76624 6.20436 6.27872 6.32313 6.96822 7.00662 7.08373 7.74300 8.37685 9.23065 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027525 B = 0.002025 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.022138 B =13823.953916 C =14406.258448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.591 5.591 3 C 0.553 3.447 4 O -0.582 6.582 5 C -0.148 4.148 6 C -0.042 4.042 7 C -0.136 4.136 8 C 0.151 3.849 9 N -0.416 5.416 10 C -0.050 4.050 11 C -0.044 4.044 12 N -0.523 5.523 13 C 0.183 3.817 14 C -0.133 4.133 15 C -0.067 4.067 16 C 0.141 3.859 17 H 0.085 0.915 18 C -0.133 4.133 19 C 0.155 3.845 20 N -0.621 5.621 21 C -0.238 4.238 22 H 0.082 0.918 23 C -0.066 4.066 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.267 1.267 29 C 0.131 3.869 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.210 0.790 36 H 0.191 0.809 37 H 0.234 0.766 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.082 0.918 43 H -0.015 1.015 44 H 0.248 0.752 45 H 0.045 0.955 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 24.895 1.679 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.321 5.321 3 C 0.344 3.656 4 O -0.463 6.463 5 C -0.152 4.152 6 C -0.061 4.061 7 C -0.155 4.155 8 C 0.057 3.943 9 N -0.095 5.095 10 C -0.179 4.179 11 C -0.189 4.189 12 N -0.240 5.240 13 C -0.098 4.098 14 C -0.153 4.153 15 C -0.086 4.086 16 C 0.036 3.964 17 H 0.104 0.896 18 C -0.172 4.172 19 C 0.030 3.970 20 N -0.348 5.348 21 C -0.367 4.367 22 H 0.099 0.901 23 C -0.258 4.258 24 N -0.597 5.597 25 Si 0.810 3.190 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.192 1.192 29 C 0.005 3.995 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.226 0.774 36 H 0.208 0.792 37 H 0.250 0.750 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.003 0.997 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -8.368 25.441 1.919 26.850 hybrid contribution 0.329 -2.000 -0.759 2.164 sum -8.040 23.440 1.160 24.808 Atomic orbital electron populations 1.22746 0.77632 1.05288 1.03390 1.47719 1.08345 1.04530 1.71481 1.18772 0.86752 0.84373 0.75704 1.90768 1.15589 1.87781 1.52178 1.19854 0.96549 0.93494 1.05297 1.21116 0.99562 0.90506 0.94914 1.20947 0.92944 0.99261 1.02391 1.18188 0.92521 0.84747 0.98813 1.43342 1.14368 1.09807 1.42024 1.23350 0.87613 1.00130 1.06777 1.22816 0.99780 0.93380 1.02890 1.70323 1.02767 1.31449 1.19452 1.25897 1.01967 0.80817 1.01089 1.21081 1.02304 0.90759 1.01147 1.21964 0.91779 0.98604 0.96223 1.21829 0.96583 0.82328 0.95611 0.89649 1.23193 1.02068 0.95155 0.96785 1.21728 0.96531 0.94368 0.84384 1.44698 1.80886 1.02025 1.07184 1.19423 1.38601 0.85997 0.92684 0.90056 1.25638 1.02427 1.00005 0.97742 1.70020 1.56399 1.20929 1.12397 0.85033 0.77593 0.78762 0.77643 1.21782 1.21812 1.19172 1.21588 0.98337 0.84784 0.94820 0.90301 0.90714 0.86791 0.84217 0.82061 0.77351 0.79223 0.74954 0.81716 0.81275 0.90401 0.89788 0.89964 0.99692 0.94205 0.93718 0.96929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 7.81 127.77 1.00 1.95 16 2 N -0.59 -16.23 2.88 -819.56 -2.36 -18.59 16 3 C 0.55 15.65 7.43 86.73 0.64 16.29 16 4 O -0.58 -21.38 16.13 -3.97 -0.06 -21.44 16 5 C -0.15 -2.92 5.47 -20.08 -0.11 -3.03 16 6 C -0.04 -0.70 9.59 22.50 0.22 -0.49 16 7 C -0.14 -1.67 9.45 22.34 0.21 -1.45 16 8 C 0.15 1.87 6.64 38.24 0.25 2.12 16 9 N -0.42 -5.40 2.98 -350.25 -1.04 -6.44 16 10 C -0.05 -0.56 10.85 83.03 0.90 0.34 16 11 C -0.04 -0.64 11.85 83.51 0.99 0.35 16 12 N -0.52 -9.84 11.24 -199.67 -2.24 -12.08 16 13 C 0.18 2.60 11.91 179.99 2.14 4.74 16 14 C -0.13 -1.39 9.45 22.34 0.21 -1.18 16 15 C -0.07 -0.90 7.42 22.50 0.17 -0.73 16 16 C 0.14 5.02 3.36 46.18 0.16 5.17 16 17 H 0.09 3.40 7.00 -2.39 -0.02 3.39 16 18 C -0.13 -4.82 6.62 31.99 0.21 -4.60 16 19 C 0.16 7.54 5.89 86.85 0.51 8.06 16 20 N -0.62 -31.51 3.39 -692.00 -2.35 -33.86 16 21 C -0.24 -13.10 10.27 84.03 0.86 -12.24 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 24 N -0.95 -55.38 10.09 21.65 0.22 -55.16 16 25 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 C 0.13 5.39 6.88 86.73 0.60 5.99 16 30 H 0.08 1.29 7.00 -2.39 -0.02 1.27 16 31 H 0.07 1.56 6.07 -2.39 -0.01 1.55 16 32 H 0.11 1.48 4.71 -2.39 -0.01 1.47 16 33 H 0.14 2.45 7.95 -2.91 -0.02 2.42 16 34 H 0.16 1.11 6.75 -2.91 -0.02 1.09 16 35 H 0.21 0.86 7.13 -2.91 -0.02 0.84 16 36 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.23 1.67 7.05 -2.91 -0.02 1.65 16 38 H 0.17 0.78 6.79 -2.91 -0.02 0.76 16 39 H 0.17 1.76 4.81 -2.91 -0.01 1.75 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.08 2.76 6.07 -2.39 -0.01 2.75 16 42 H 0.08 4.48 5.87 -2.39 -0.01 4.47 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.04 1.69 6.82 -2.39 -0.02 1.67 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.45 366.62 4.63 -71.81 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.02 Total: 10.90 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 9.43 Total: 18.11 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -7.78 Total: -126.14 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.45 4.63 -71.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.451 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds