Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99478 * 2 1 4 4 O 1.21576 * 119.99611 * 184.64877 * 3 2 1 5 5 C 1.47659 * 120.00222 * 4.64399 * 3 2 1 6 6 C 1.39710 * 120.08131 * 319.82821 * 5 3 2 7 7 C 1.37720 * 119.91942 * 179.97438 * 6 5 3 8 8 C 1.39041 * 120.08159 * 359.97438 * 7 6 5 9 9 N 1.39857 * 119.92442 * 179.97438 * 8 7 6 10 10 C 1.37166 * 126.48721 * 179.97438 * 9 8 7 11 11 C 1.34623 * 106.82759 * 179.97438 * 10 9 8 12 12 N 1.34150 * 108.21870 * 359.97438 * 11 10 9 13 13 C 1.30493 * 109.36509 * 359.76674 * 12 11 10 14 14 C 1.39044 * 120.15695 * 0.26976 * 8 7 6 15 15 C 1.37728 * 120.08305 * 359.49293 * 14 8 7 16 16 C 1.46499 * 120.00241 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88743 * 180.70258 * 16 2 1 18 18 C 1.55155 * 111.00742 * 56.81426 * 16 2 1 19 19 C 1.54326 * 102.94301 * 277.43216 * 18 16 2 20 20 N 1.47023 * 107.27242 * 337.80503 * 19 18 16 21 21 C 1.36936 * 125.65088 * 178.98182 * 20 19 18 22 22 H 1.07998 * 120.00307 * 179.97438 * 21 20 19 23 23 C 1.38818 * 119.99560 * 359.97301 * 21 20 19 24 24 N 1.31614 * 120.00245 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99390 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47482 * 60.00164 * 25 23 21 27 27 H 1.48501 * 109.46717 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47139 * 299.99406 * 25 23 21 29 29 C 1.47526 * 108.71518 * 358.94585 * 20 19 18 30 30 H 1.09001 * 109.47382 * 88.48673 * 1 2 3 31 31 H 1.09004 * 109.47241 * 208.48363 * 1 2 3 32 32 H 1.08999 * 109.47197 * 328.48335 * 1 2 3 33 33 H 1.07998 * 120.03692 * 359.97438 * 6 5 3 34 34 H 1.07999 * 119.96124 * 180.02562 * 7 6 5 35 35 H 1.07997 * 126.58427 * 359.93681 * 10 9 8 36 36 H 1.08003 * 125.88771 * 180.02562 * 11 10 9 37 37 H 1.08005 * 125.72188 * 180.22694 * 13 12 11 38 38 H 1.08005 * 119.96396 * 179.74724 * 14 8 7 39 39 H 1.07998 * 120.04289 * 180.23712 * 15 14 8 40 40 H 1.08999 * 110.71681 * 35.79157 * 18 16 2 41 41 H 1.08996 * 110.71919 * 159.06591 * 18 16 2 42 42 H 1.09000 * 109.88382 * 97.22208 * 19 18 16 43 43 H 1.09004 * 109.88330 * 218.23482 * 19 18 16 44 44 H 0.97005 * 120.00092 * 179.97438 * 24 23 21 45 45 H 1.09002 * 110.36818 * 265.30938 * 29 20 19 46 46 H 1.08997 * 110.41398 * 142.95342 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1690 -0.0853 5 6 1.4041 2.4439 0.1035 6 6 0.2023 2.6182 -0.5873 7 6 -0.4805 3.8101 -0.4879 8 6 0.0245 4.8391 0.2991 9 7 -0.6713 6.0483 0.3973 10 6 -0.2994 7.1462 1.1306 11 6 -1.2492 8.0812 0.9414 12 7 -2.1777 7.5749 0.1161 13 6 -1.8407 6.3602 -0.2211 14 6 1.2229 4.6710 0.9840 15 6 1.9087 3.4800 0.8933 16 6 2.1976 -1.2687 -0.0006 17 1 3.2737 -1.0961 0.0120 18 6 1.7891 -2.1463 -1.2131 19 6 0.4934 -2.8280 -0.7255 20 7 0.5122 -2.8008 0.7443 21 6 -0.4695 -3.2897 1.5643 22 1 -0.3607 -3.2221 2.6367 23 6 -1.6045 -3.8722 1.0171 24 7 -1.7373 -3.9542 -0.2898 25 14 -2.9440 -4.5384 2.1357 26 1 -3.4765 -3.4388 2.9797 27 1 -4.0409 -5.1057 1.3109 28 1 -2.3793 -5.6012 3.0056 29 6 1.7643 -2.1604 1.1899 30 1 -0.3634 0.0271 -1.0273 31 1 -0.3634 -0.9033 0.4901 32 1 -0.3633 0.8761 0.5372 33 1 -0.1907 1.8192 -1.1984 34 1 -1.4098 3.9454 -1.0213 35 1 0.5852 7.2418 1.7427 36 1 -1.2611 9.0690 1.3781 37 1 -2.3990 5.7105 -0.8790 38 1 1.6144 5.4738 1.5912 39 1 2.8375 3.3488 1.4286 40 1 1.5932 -1.5271 -2.0886 41 1 2.5579 -2.8883 -1.4285 42 1 -0.3746 -2.2821 -1.0953 43 1 0.4610 -3.8586 -1.0791 44 1 -2.5303 -4.3616 -0.6721 45 1 2.5241 -2.9146 1.3950 46 1 1.5853 -1.5505 2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033308057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 111.839631 kcal Electronic energy + Delta-G solvation = -29189.225477 eV Core-core repulsion = 25274.881525 eV Total energy + Delta-G solvation = -3914.343952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.64108 -40.49064 -38.85420 -37.42047 -34.71755 -34.13853 -32.33408 -31.64141 -30.19881 -29.60163 -29.19496 -27.91826 -26.24116 -24.84501 -24.01515 -23.55685 -21.79217 -20.97218 -20.64607 -20.16182 -19.17254 -18.74964 -17.39439 -16.97433 -16.32203 -15.83449 -15.68501 -15.31940 -15.02162 -14.74593 -14.60104 -14.30061 -14.06508 -13.95689 -13.84663 -13.63855 -13.33657 -13.16256 -12.80480 -12.51036 -12.13360 -12.04131 -11.79527 -11.72585 -11.32173 -11.03186 -10.97936 -10.89759 -10.80122 -10.44316 -10.36613 -10.23906 -10.01967 -9.75216 -9.60208 -9.40356 -9.05213 -8.78379 -8.59378 -8.29899 -6.92259 -5.83316 -3.18040 0.28581 0.93934 1.82689 2.30147 2.74021 2.82814 3.16406 3.32984 3.38701 3.39065 3.52172 4.21202 4.27020 4.35838 4.39770 4.46938 4.55941 4.82186 4.90076 5.03049 5.21715 5.26777 5.29018 5.36706 5.39466 5.50532 5.53749 5.60401 5.63685 5.74967 5.82096 5.92741 6.01058 6.06957 6.12359 6.23974 6.27869 6.38605 6.41536 6.45953 6.54275 6.69525 6.88142 6.97130 7.44625 7.48893 7.64058 7.66912 7.71308 8.11933 8.28513 9.09694 9.68848 10.33880 11.27380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002826 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.237350 B = 9907.001580 C =11341.392843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.578 5.578 3 C 0.553 3.447 4 O -0.548 6.548 5 C -0.125 4.125 6 C -0.059 4.059 7 C -0.140 4.140 8 C 0.148 3.852 9 N -0.411 5.411 10 C -0.053 4.053 11 C -0.024 4.024 12 N -0.486 5.486 13 C 0.192 3.808 14 C -0.140 4.140 15 C -0.040 4.040 16 C 0.122 3.878 17 H 0.101 0.899 18 C -0.155 4.155 19 C 0.173 3.827 20 N -0.602 5.602 21 C -0.234 4.234 22 H 0.077 0.923 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.124 3.876 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.211 0.789 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.254 0.746 45 H 0.033 0.967 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 17.690 -0.281 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.308 5.308 3 C 0.341 3.659 4 O -0.427 6.427 5 C -0.128 4.128 6 C -0.078 4.078 7 C -0.160 4.160 8 C 0.054 3.946 9 N -0.090 5.090 10 C -0.183 4.183 11 C -0.169 4.169 12 N -0.203 5.203 13 C -0.089 4.089 14 C -0.160 4.160 15 C -0.059 4.059 16 C 0.018 3.982 17 H 0.119 0.881 18 C -0.194 4.194 19 C 0.049 3.951 20 N -0.330 5.330 21 C -0.362 4.362 22 H 0.095 0.905 23 C -0.200 4.200 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.002 4.002 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.196 0.804 36 H 0.192 0.808 37 H 0.227 0.773 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.841 17.914 -0.610 18.332 hybrid contribution -0.145 -0.844 0.814 1.182 sum 3.696 17.070 0.204 17.467 Atomic orbital electron populations 1.22623 0.78506 1.06393 1.01630 1.47630 1.07767 1.04995 1.70381 1.18235 0.86994 0.83567 0.77151 1.90757 1.13525 1.87298 1.51114 1.20068 0.96349 0.95404 1.01012 1.21600 0.92447 0.96797 0.96990 1.20764 1.01799 0.92501 1.00920 1.17975 0.93044 0.84734 0.98798 1.43237 1.19261 1.10777 1.35690 1.22816 1.04080 0.87717 1.03675 1.22382 0.92493 1.00542 1.01532 1.70345 1.27687 1.07498 1.14786 1.25365 0.87184 0.95012 1.01355 1.20755 0.94250 0.99016 1.01991 1.21042 0.98777 0.90559 0.95567 1.22311 0.96212 0.82208 0.97438 0.88100 1.23249 1.00901 0.98501 0.96786 1.21252 0.91862 0.98685 0.83323 1.44622 1.17229 1.69125 1.01984 1.18988 0.95683 1.32383 0.89127 0.90478 1.24784 0.98395 1.00903 0.95959 1.69945 1.28750 1.49205 1.08736 0.86226 0.81395 0.78875 0.79405 1.21114 1.21583 1.21188 1.21936 0.90041 0.93595 0.94668 0.92959 0.85361 0.92057 0.83290 0.84435 0.80431 0.80822 0.77301 0.84679 0.84080 0.91848 0.91223 0.93072 0.93867 0.93585 0.94953 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 7.15 59.85 0.43 1.23 16 2 N -0.58 -9.39 2.91 -172.65 -0.50 -9.89 16 3 C 0.55 8.75 7.33 -12.41 -0.09 8.66 16 4 O -0.55 -10.12 16.32 5.30 0.09 -10.03 16 5 C -0.12 -1.59 5.21 -104.95 -0.55 -2.13 16 6 C -0.06 -0.64 7.51 -39.22 -0.29 -0.94 16 7 C -0.14 -1.31 9.45 -39.47 -0.37 -1.68 16 8 C 0.15 1.44 6.64 -83.60 -0.55 0.88 16 9 N -0.41 -3.97 2.98 -62.06 -0.19 -4.16 16 10 C -0.05 -0.46 10.85 -16.44 -0.18 -0.64 16 11 C -0.02 -0.23 11.85 -17.82 -0.21 -0.44 16 12 N -0.49 -5.62 11.24 -14.46 -0.16 -5.79 16 13 C 0.19 1.88 11.91 -89.58 -1.07 0.82 16 14 C -0.14 -1.31 9.45 -39.47 -0.37 -1.68 16 15 C -0.04 -0.44 9.63 -39.22 -0.38 -0.82 16 16 C 0.12 2.12 3.66 -65.78 -0.24 1.88 16 17 H 0.10 1.74 7.02 -51.93 -0.36 1.37 16 18 C -0.16 -2.74 6.43 -24.90 -0.16 -2.90 16 19 C 0.17 3.80 4.30 -3.06 -0.01 3.78 16 20 N -0.60 -13.85 1.90 -169.98 -0.32 -14.17 16 21 C -0.23 -5.97 9.87 -15.06 -0.15 -6.12 16 22 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 23 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 24 N -0.92 -24.90 10.31 55.49 0.57 -24.33 16 25 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 C 0.12 2.42 6.51 -2.47 -0.02 2.40 16 30 H 0.05 0.76 6.98 -51.93 -0.36 0.40 16 31 H 0.13 2.56 4.57 -51.93 -0.24 2.32 16 32 H 0.06 0.84 5.63 -51.93 -0.29 0.55 16 33 H 0.15 1.53 5.49 -52.49 -0.29 1.24 16 34 H 0.14 0.94 6.75 -52.49 -0.35 0.59 16 35 H 0.18 1.00 7.13 -52.49 -0.37 0.63 16 36 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.21 1.38 7.05 -52.48 -0.37 1.01 16 38 H 0.14 0.93 6.79 -52.48 -0.36 0.58 16 39 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.20 6.26 -51.93 -0.33 0.88 16 43 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 44 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -31.25 365.77 -10.14 -41.38 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.80 Total: 3.51 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -4.31 Total: 2.13 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.60 Total: -58.33 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.25 -10.14 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.223 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds