Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99478 * 2 1 4 4 O 1.21576 * 119.99611 * 184.64877 * 3 2 1 5 5 C 1.47659 * 120.00222 * 4.64399 * 3 2 1 6 6 C 1.39710 * 120.08131 * 319.82821 * 5 3 2 7 7 C 1.37720 * 119.91942 * 179.97438 * 6 5 3 8 8 C 1.39041 * 120.08159 * 359.97438 * 7 6 5 9 9 N 1.39857 * 119.92442 * 179.97438 * 8 7 6 10 10 C 1.37166 * 126.48721 * 179.97438 * 9 8 7 11 11 C 1.34623 * 106.82759 * 179.97438 * 10 9 8 12 12 N 1.34150 * 108.21870 * 359.97438 * 11 10 9 13 13 C 1.30493 * 109.36509 * 359.76674 * 12 11 10 14 14 C 1.39044 * 120.15695 * 0.26976 * 8 7 6 15 15 C 1.37728 * 120.08305 * 359.49293 * 14 8 7 16 16 C 1.46499 * 120.00241 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88743 * 180.70258 * 16 2 1 18 18 C 1.55155 * 111.00742 * 56.81426 * 16 2 1 19 19 C 1.54326 * 102.94301 * 277.43216 * 18 16 2 20 20 N 1.47023 * 107.27242 * 337.80503 * 19 18 16 21 21 C 1.36936 * 125.65088 * 178.98182 * 20 19 18 22 22 H 1.07998 * 120.00307 * 179.97438 * 21 20 19 23 23 C 1.38818 * 119.99560 * 359.97301 * 21 20 19 24 24 N 1.31614 * 120.00245 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99390 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47482 * 60.00164 * 25 23 21 27 27 H 1.48501 * 109.46717 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47139 * 299.99406 * 25 23 21 29 29 C 1.47526 * 108.71518 * 358.94585 * 20 19 18 30 30 H 1.09001 * 109.47382 * 88.48673 * 1 2 3 31 31 H 1.09004 * 109.47241 * 208.48363 * 1 2 3 32 32 H 1.08999 * 109.47197 * 328.48335 * 1 2 3 33 33 H 1.07998 * 120.03692 * 359.97438 * 6 5 3 34 34 H 1.07999 * 119.96124 * 180.02562 * 7 6 5 35 35 H 1.07997 * 126.58427 * 359.93681 * 10 9 8 36 36 H 1.08003 * 125.88771 * 180.02562 * 11 10 9 37 37 H 1.08005 * 125.72188 * 180.22694 * 13 12 11 38 38 H 1.08005 * 119.96396 * 179.74724 * 14 8 7 39 39 H 1.07998 * 120.04289 * 180.23712 * 15 14 8 40 40 H 1.08999 * 110.71681 * 35.79157 * 18 16 2 41 41 H 1.08996 * 110.71919 * 159.06591 * 18 16 2 42 42 H 1.09000 * 109.88382 * 97.22208 * 19 18 16 43 43 H 1.09004 * 109.88330 * 218.23482 * 19 18 16 44 44 H 0.97005 * 120.00092 * 179.97438 * 24 23 21 45 45 H 1.09002 * 110.36818 * 265.30938 * 29 20 19 46 46 H 1.08997 * 110.41398 * 142.95342 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1690 -0.0853 5 6 1.4041 2.4439 0.1035 6 6 0.2023 2.6182 -0.5873 7 6 -0.4805 3.8101 -0.4879 8 6 0.0245 4.8391 0.2991 9 7 -0.6713 6.0483 0.3973 10 6 -0.2994 7.1462 1.1306 11 6 -1.2492 8.0812 0.9414 12 7 -2.1777 7.5749 0.1161 13 6 -1.8407 6.3602 -0.2211 14 6 1.2229 4.6710 0.9840 15 6 1.9087 3.4800 0.8933 16 6 2.1976 -1.2687 -0.0006 17 1 3.2737 -1.0961 0.0120 18 6 1.7891 -2.1463 -1.2131 19 6 0.4934 -2.8280 -0.7255 20 7 0.5122 -2.8008 0.7443 21 6 -0.4695 -3.2897 1.5643 22 1 -0.3607 -3.2221 2.6367 23 6 -1.6045 -3.8722 1.0171 24 7 -1.7373 -3.9542 -0.2898 25 14 -2.9440 -4.5384 2.1357 26 1 -3.4765 -3.4388 2.9797 27 1 -4.0409 -5.1057 1.3109 28 1 -2.3793 -5.6012 3.0056 29 6 1.7643 -2.1604 1.1899 30 1 -0.3634 0.0271 -1.0273 31 1 -0.3634 -0.9033 0.4901 32 1 -0.3633 0.8761 0.5372 33 1 -0.1907 1.8192 -1.1984 34 1 -1.4098 3.9454 -1.0213 35 1 0.5852 7.2418 1.7427 36 1 -1.2611 9.0690 1.3781 37 1 -2.3990 5.7105 -0.8790 38 1 1.6144 5.4738 1.5912 39 1 2.8375 3.3488 1.4286 40 1 1.5932 -1.5271 -2.0886 41 1 2.5579 -2.8883 -1.4285 42 1 -0.3746 -2.2821 -1.0953 43 1 0.4610 -3.8586 -1.0791 44 1 -2.5303 -4.3616 -0.6721 45 1 2.5241 -2.9146 1.3950 46 1 1.5853 -1.5505 2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033308057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = 96.809624 kcal Electronic energy + Delta-G solvation = -29189.877227 eV Core-core repulsion = 25274.881525 eV Total energy + Delta-G solvation = -3914.995702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33486 -41.64060 -39.91923 -38.82825 -36.00902 -35.18555 -33.98623 -32.46171 -31.40061 -30.69786 -30.24180 -29.40776 -27.61208 -26.41341 -25.16520 -24.32391 -22.80719 -21.94021 -21.76646 -21.52642 -20.33632 -19.58292 -18.92417 -18.44844 -17.61428 -16.72521 -16.64580 -16.50131 -16.17953 -16.05455 -15.81056 -15.55144 -15.12386 -14.95732 -14.78160 -14.54711 -14.37754 -14.23397 -13.91139 -13.81220 -13.60780 -13.44260 -13.35872 -12.99454 -12.82586 -12.74110 -12.36024 -12.19974 -12.05965 -11.91534 -11.80671 -11.71101 -11.52686 -11.16668 -10.89015 -10.68964 -10.18847 -9.78458 -9.71104 -9.33870 -8.78629 -7.81534 -5.16442 -0.52857 0.18420 1.06145 1.50227 1.51292 1.57361 1.60593 1.68188 1.97320 2.09838 2.51611 2.64707 3.37136 3.40537 3.49419 3.62625 3.66510 3.73863 3.87645 3.89905 4.01228 4.09595 4.12236 4.30506 4.33107 4.44334 4.52632 4.59351 4.63990 4.66046 4.71345 4.82706 4.85179 4.88877 4.94649 5.00915 5.05231 5.19737 5.27165 5.35368 5.47668 5.50094 5.59736 5.69678 5.72209 5.81725 6.19378 6.21222 6.40709 6.95668 7.03831 7.13711 7.78454 8.42835 9.27510 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002826 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.237350 B = 9907.001580 C =11341.392843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.581 5.581 3 C 0.555 3.445 4 O -0.577 6.577 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.136 4.136 8 C 0.149 3.851 9 N -0.416 5.416 10 C -0.052 4.052 11 C -0.042 4.042 12 N -0.522 5.522 13 C 0.184 3.816 14 C -0.134 4.134 15 C -0.044 4.044 16 C 0.132 3.868 17 H 0.109 0.891 18 C -0.141 4.141 19 C 0.186 3.814 20 N -0.614 5.614 21 C -0.239 4.239 22 H 0.078 0.922 23 C -0.053 4.053 24 N -0.943 5.943 25 Si 0.969 3.031 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.285 1.285 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.208 0.792 36 H 0.192 0.808 37 H 0.234 0.766 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.005 0.995 44 H 0.247 0.753 45 H 0.038 0.962 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 19.617 0.267 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.311 5.311 3 C 0.345 3.655 4 O -0.459 6.459 5 C -0.150 4.150 6 C -0.080 4.080 7 C -0.155 4.155 8 C 0.055 3.945 9 N -0.095 5.095 10 C -0.181 4.181 11 C -0.187 4.187 12 N -0.239 5.239 13 C -0.097 4.097 14 C -0.153 4.153 15 C -0.063 4.063 16 C 0.028 3.972 17 H 0.126 0.874 18 C -0.180 4.180 19 C 0.062 3.938 20 N -0.341 5.341 21 C -0.367 4.367 22 H 0.096 0.904 23 C -0.247 4.247 24 N -0.591 5.591 25 Si 0.798 3.202 26 H -0.203 1.203 27 H -0.223 1.223 28 H -0.211 1.211 29 C -0.001 4.001 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.224 0.776 36 H 0.209 0.791 37 H 0.250 0.750 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.024 19.871 -0.041 20.275 hybrid contribution -0.184 -1.339 0.680 1.513 sum 3.840 18.533 0.639 18.937 Atomic orbital electron populations 1.22459 0.78191 1.05252 1.02078 1.47651 1.07868 1.04906 1.70659 1.18665 0.86725 0.84207 0.75865 1.90733 1.14909 1.87792 1.52463 1.19923 0.97409 0.94411 1.03306 1.21601 0.91919 0.97591 0.96871 1.21002 1.02375 0.91648 1.00517 1.18121 0.93071 0.84818 0.98455 1.43334 1.19320 1.10905 1.35945 1.23331 1.04631 0.86979 1.03203 1.22818 0.92521 1.01724 1.01621 1.70331 1.28961 1.08604 1.16003 1.25900 0.87364 0.94998 1.01418 1.20973 0.93763 0.98931 1.01644 1.21116 0.99062 0.90711 0.95425 1.22132 0.96638 0.82501 0.95947 0.87360 1.23117 0.98912 0.98691 0.97263 1.20974 0.93409 0.96531 0.82932 1.44760 1.17903 1.69125 1.02338 1.19260 0.96298 1.31600 0.89584 0.90429 1.25447 1.00336 1.01822 0.97091 1.70131 1.28845 1.50183 1.09989 0.85300 0.78862 0.78256 0.77752 1.20279 1.22273 1.21107 1.22018 0.88742 0.93844 0.95516 0.91973 0.89240 0.90023 0.83059 0.81959 0.77571 0.79056 0.74968 0.82078 0.83855 0.90466 0.89865 0.95038 0.97677 0.94369 0.94404 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.93 7.15 127.77 0.91 2.85 16 2 N -0.58 -18.41 2.91 -818.41 -2.38 -20.79 16 3 C 0.56 17.01 7.33 86.73 0.64 17.65 16 4 O -0.58 -20.87 16.32 -3.96 -0.06 -20.94 16 5 C -0.15 -3.50 5.21 -20.08 -0.10 -3.61 16 6 C -0.06 -1.19 7.51 22.50 0.17 -1.02 16 7 C -0.14 -2.15 9.45 22.34 0.21 -1.94 16 8 C 0.15 2.45 6.64 38.25 0.25 2.70 16 9 N -0.42 -6.86 2.98 -350.25 -1.04 -7.90 16 10 C -0.05 -0.75 10.85 83.03 0.90 0.15 16 11 C -0.04 -0.72 11.85 83.51 0.99 0.27 16 12 N -0.52 -11.22 11.24 -199.67 -2.25 -13.47 16 13 C 0.18 3.19 11.91 179.99 2.14 5.33 16 14 C -0.13 -2.08 9.45 22.34 0.21 -1.87 16 15 C -0.04 -0.87 9.63 22.50 0.22 -0.65 16 16 C 0.13 4.50 3.66 46.39 0.17 4.67 16 17 H 0.11 3.60 7.02 -2.39 -0.02 3.58 16 18 C -0.14 -4.89 6.43 31.78 0.20 -4.68 16 19 C 0.19 8.34 4.30 86.73 0.37 8.71 16 20 N -0.61 -28.62 1.90 -691.70 -1.31 -29.93 16 21 C -0.24 -12.32 9.87 84.04 0.83 -11.49 16 22 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.05 -2.80 5.49 84.86 0.47 -2.33 16 24 N -0.94 -52.36 10.31 21.65 0.22 -52.14 16 25 Si 0.97 43.24 29.55 68.60 2.03 45.27 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 29 C 0.12 4.83 6.51 86.84 0.57 5.39 16 30 H 0.06 1.77 6.98 -2.39 -0.02 1.76 16 31 H 0.09 3.59 4.57 -2.38 -0.01 3.58 16 32 H 0.08 2.15 5.63 -2.39 -0.01 2.14 16 33 H 0.15 2.83 5.49 -2.91 -0.02 2.82 16 34 H 0.16 1.68 6.75 -2.91 -0.02 1.66 16 35 H 0.21 1.53 7.13 -2.91 -0.02 1.51 16 36 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.23 2.45 7.05 -2.91 -0.02 2.43 16 38 H 0.16 1.60 6.79 -2.91 -0.02 1.58 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.03 1.52 6.26 -2.39 -0.01 1.51 16 43 H 0.00 0.26 7.50 -2.39 -0.02 0.24 16 44 H 0.25 13.54 8.31 -92.70 -0.77 12.77 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.35 365.77 5.37 -62.99 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.02 Total: 16.80 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 9.15 Total: 20.12 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -6.76 Total: -124.23 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.35 5.37 -62.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033308057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.797 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds