Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34770 * 120.00245 * 2 1 4 4 O 1.21583 * 120.00292 * 185.45837 * 3 2 1 5 5 C 1.47598 * 119.99897 * 5.46001 * 3 2 1 6 6 C 1.39644 * 120.19417 * 54.95030 * 5 3 2 7 7 C 1.37848 * 119.91852 * 179.79082 * 6 5 3 8 8 C 1.38516 * 120.30766 * 0.48763 * 7 6 5 9 9 C 1.38081 * 120.39036 * 359.74573 * 8 7 6 10 10 C 1.38748 * 120.07664 * 0.02562 * 9 8 7 11 11 N 1.39703 * 120.15781 * 179.97438 * 10 9 8 12 12 C 1.35853 * 126.09819 * 6.57582 * 11 10 9 13 13 C 1.35288 * 107.61119 * 179.97438 * 12 11 10 14 14 C 1.39959 * 107.96731 * 359.97438 * 13 12 11 15 15 N 1.30822 * 108.36859 * 359.75960 * 14 13 12 16 16 C 1.46502 * 119.99551 * 180.02562 * 2 1 3 17 17 H 1.09002 * 110.63523 * 181.68947 * 16 2 1 18 18 C 1.55159 * 110.72283 * 305.02155 * 16 2 1 19 19 C 1.55133 * 101.48392 * 82.69873 * 18 16 2 20 20 N 1.47419 * 104.71968 * 37.29699 * 19 18 16 21 21 C 1.36941 * 125.64717 * 155.81979 * 20 19 18 22 22 H 1.08005 * 119.99795 * 189.84085 * 21 20 19 23 23 C 1.38809 * 120.00005 * 9.83944 * 21 20 19 24 24 N 1.31623 * 119.99816 * 8.41368 * 23 21 20 25 25 Si 1.86803 * 120.00100 * 188.41611 * 23 21 20 26 26 H 1.48501 * 109.46744 * 265.00389 * 25 23 21 27 27 H 1.48500 * 109.46907 * 25.00352 * 25 23 21 28 28 H 1.48501 * 109.47143 * 145.00634 * 25 23 21 29 29 C 1.47022 * 108.70522 * 335.55092 * 20 19 18 30 30 H 1.08999 * 109.47019 * 264.77968 * 1 2 3 31 31 H 1.09002 * 109.46641 * 24.78209 * 1 2 3 32 32 H 1.08997 * 109.46901 * 144.77981 * 1 2 3 33 33 H 1.08001 * 120.03765 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.84492 * 180.22814 * 7 6 5 35 35 H 1.08004 * 119.80195 * 179.76501 * 8 7 6 36 36 H 1.08003 * 119.96274 * 180.02562 * 9 8 7 37 37 H 1.07997 * 126.19943 * 359.93661 * 12 11 10 38 38 H 1.07999 * 126.01252 * 179.97438 * 13 12 11 39 39 H 1.07995 * 125.81387 * 180.02562 * 14 13 12 40 40 H 1.08996 * 111.00608 * 200.94268 * 18 16 2 41 41 H 1.09002 * 111.00225 * 324.75403 * 18 16 2 42 42 H 1.08999 * 110.49769 * 278.45553 * 19 18 16 43 43 H 1.09000 * 110.34171 * 156.05865 * 19 18 16 44 44 H 0.97006 * 119.99718 * 180.02562 * 24 23 21 45 45 H 1.09006 * 109.88257 * 120.70552 * 29 20 19 46 46 H 1.09007 * 109.88567 * 241.86702 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3507 1.1695 -0.1002 5 6 1.4060 2.4425 0.1216 6 6 0.5398 2.6550 1.1961 7 6 -0.1386 3.8499 1.3064 8 6 0.0269 4.8385 0.3505 9 6 0.8766 4.6401 -0.7198 10 6 1.5710 3.4453 -0.8441 11 7 2.4306 3.2426 -1.9265 12 6 2.7769 4.1688 -2.8581 13 6 3.6240 3.5754 -3.7302 14 6 3.8034 2.2485 -3.3228 15 7 3.0946 2.0499 -2.2413 16 6 2.1975 -1.2688 -0.0006 17 1 3.2726 -1.0918 0.0296 18 6 1.7507 -2.1612 1.1875 19 6 0.4679 -2.8189 0.6144 20 7 0.7745 -3.0618 -0.8070 21 6 0.1810 -4.0063 -1.6014 22 1 0.5813 -4.2156 -2.5824 23 6 -0.9349 -4.6946 -1.1457 24 7 -1.5221 -4.3286 -0.0261 25 14 -1.6032 -6.1406 -2.1215 26 1 -2.6948 -5.6735 -3.0135 27 1 -0.5139 -6.7314 -2.9397 28 1 -2.1324 -7.1662 -1.1869 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3633 -0.0935 1.0234 31 1 -0.3633 0.9331 -0.4308 32 1 -0.3633 -0.8395 -0.5927 33 1 0.4044 1.8855 1.9417 34 1 -0.8054 4.0144 2.1399 35 1 -0.5115 5.7702 0.4429 36 1 1.0008 5.4158 -1.4609 37 1 2.4371 5.1932 -2.8960 38 1 4.0813 4.0433 -4.5894 39 1 4.4247 1.5149 -3.8148 40 1 2.5076 -2.9103 1.4198 41 1 1.5199 -1.5569 2.0648 42 1 -0.3823 -2.1435 0.7090 43 1 0.2644 -3.7603 1.1247 44 1 -2.3017 -4.8099 0.2926 45 1 2.6910 -2.6654 -1.5879 46 1 1.4351 -1.4729 -2.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033459922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = 136.795531 kcal Electronic energy + Delta-G solvation = -30317.740368 eV Core-core repulsion = 26404.478585 eV Total energy + Delta-G solvation = -3913.261783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59183 -40.01105 -38.65082 -37.10225 -34.30605 -33.60455 -32.31221 -31.26962 -30.14116 -29.26027 -28.97390 -27.88196 -26.07479 -24.63916 -23.74384 -23.57365 -21.48330 -20.70692 -20.27624 -20.11484 -18.84773 -18.09377 -17.16222 -16.83058 -16.12303 -15.73793 -15.35140 -15.24509 -14.84672 -14.66079 -14.43486 -14.04380 -13.84887 -13.78158 -13.57240 -12.99240 -12.82287 -12.75693 -12.55459 -12.14068 -12.09021 -11.91743 -11.69449 -11.58160 -11.48745 -11.01821 -10.84711 -10.77253 -10.49022 -10.35176 -10.25115 -10.03509 -9.88999 -9.62796 -9.46243 -9.18397 -9.11365 -8.56822 -8.17483 -8.05002 -6.77730 -5.74034 -3.05950 0.57626 0.88718 2.11540 2.32562 2.79532 3.04189 3.31633 3.39987 3.46179 3.48177 3.65281 4.27017 4.48325 4.51434 4.65941 4.70517 4.76316 5.03002 5.07960 5.23553 5.42401 5.46638 5.50630 5.51603 5.56847 5.59902 5.65755 5.79713 5.81865 5.92116 5.96984 6.00659 6.02632 6.14547 6.33804 6.36384 6.41084 6.44636 6.58929 6.59218 6.71483 6.81189 7.04596 7.18303 7.51171 7.58774 7.64700 7.79641 7.87418 8.27368 8.61088 9.21111 9.82435 10.50318 11.38840 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.003445 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.844085 B = 8126.707947 C = 8910.081802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.588 5.588 3 C 0.567 3.433 4 O -0.515 6.515 5 C -0.124 4.124 6 C -0.062 4.062 7 C -0.136 4.136 8 C -0.078 4.078 9 C -0.151 4.151 10 C 0.203 3.797 11 N -0.331 5.331 12 C 0.040 3.960 13 C -0.254 4.254 14 C 0.044 3.956 15 N -0.234 5.234 16 C 0.134 3.866 17 H 0.098 0.902 18 C -0.158 4.158 19 C 0.166 3.834 20 N -0.602 5.602 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.281 1.281 28 H -0.290 1.290 29 C 0.129 3.871 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.187 0.813 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 20.986 0.327 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.354 3.646 4 O -0.390 6.390 5 C -0.129 4.129 6 C -0.081 4.081 7 C -0.154 4.154 8 C -0.097 4.097 9 C -0.172 4.172 10 C 0.108 3.892 11 N -0.108 5.108 12 C -0.100 4.100 13 C -0.282 4.282 14 C -0.145 4.145 15 N -0.051 5.051 16 C 0.030 3.970 17 H 0.116 0.884 18 C -0.197 4.197 19 C 0.042 3.958 20 N -0.329 5.329 21 C -0.354 4.354 22 H 0.092 0.908 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.217 1.217 29 C 0.002 3.998 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.192 0.808 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.254 19.984 1.197 20.467 hybrid contribution -0.299 -0.075 -1.239 1.277 sum 3.955 19.910 -0.043 20.299 Atomic orbital electron populations 1.22033 0.79302 1.03301 1.02047 1.47589 1.07028 1.05074 1.72339 1.17755 0.87057 0.82903 0.76911 1.90744 1.13447 1.86632 1.48205 1.19765 1.01024 0.95592 0.96559 1.21276 0.92853 0.97734 0.96230 1.21141 1.00873 0.93414 1.00018 1.21066 0.96422 0.99299 0.92864 1.20725 0.99645 0.95790 1.01040 1.17410 0.91173 0.94427 0.86180 1.46040 1.35121 1.09412 1.20206 1.22685 0.99794 0.96369 0.91149 1.21596 1.06809 0.95380 1.04455 1.24206 0.99328 0.97014 0.93911 1.78107 1.10104 1.01877 1.15001 1.22029 0.96343 0.81945 0.96652 0.88362 1.23402 1.01400 0.98473 0.96431 1.21657 0.90877 0.99010 0.84296 1.44525 1.43132 1.37785 1.07457 1.19028 1.06923 1.11274 0.98176 0.90750 1.24775 0.97125 1.00335 0.98043 1.69944 1.22416 1.41658 1.22668 0.86144 0.78736 0.82287 0.78853 1.21725 1.20651 1.21674 1.21607 0.92678 0.91195 0.94290 0.92833 0.92618 0.88348 0.84438 0.84824 0.84755 0.84908 0.80815 0.83033 0.79655 0.91100 0.92064 0.94698 0.91312 0.93803 0.95120 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 7.32 59.85 0.44 1.75 16 2 N -0.59 -10.67 2.82 -173.04 -0.49 -11.16 16 3 C 0.57 10.30 5.75 -12.44 -0.07 10.23 16 4 O -0.51 -10.77 13.98 5.29 0.07 -10.70 16 5 C -0.12 -1.86 4.45 -104.82 -0.47 -2.33 16 6 C -0.06 -0.73 8.18 -39.20 -0.32 -1.05 16 7 C -0.14 -1.21 10.02 -39.62 -0.40 -1.61 16 8 C -0.08 -0.63 10.03 -39.54 -0.40 -1.03 16 9 C -0.15 -1.49 9.45 -39.45 -0.37 -1.86 16 10 C 0.20 2.81 6.68 -83.35 -0.56 2.26 16 11 N -0.33 -4.93 3.78 -10.37 -0.04 -4.97 16 12 C 0.04 0.45 10.81 -16.82 -0.18 0.27 16 13 C -0.25 -2.83 10.80 -39.99 -0.43 -3.26 16 14 C 0.04 0.62 12.02 -17.34 -0.21 0.41 16 15 N -0.23 -4.06 8.25 30.64 0.25 -3.81 16 16 C 0.13 2.61 3.58 -66.10 -0.24 2.37 16 17 H 0.10 1.95 7.01 -51.93 -0.36 1.59 16 18 C -0.16 -3.04 6.54 -24.46 -0.16 -3.20 16 19 C 0.17 3.90 4.57 -2.41 -0.01 3.89 16 20 N -0.60 -15.26 2.99 -169.93 -0.51 -15.77 16 21 C -0.23 -6.27 10.24 -15.06 -0.15 -6.43 16 22 H 0.07 2.04 7.84 -52.48 -0.41 1.62 16 23 C -0.01 -0.18 5.41 -17.43 -0.09 -0.27 16 24 N -0.92 -26.31 10.63 55.49 0.59 -25.72 16 25 Si 0.91 22.01 29.56 -169.99 -5.03 16.98 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C 0.13 2.86 6.20 -3.07 -0.02 2.84 16 30 H 0.05 0.84 7.52 -51.93 -0.39 0.45 16 31 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 32 H 0.10 2.06 5.59 -51.93 -0.29 1.77 16 33 H 0.14 1.50 7.61 -52.49 -0.40 1.10 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 36 H 0.13 0.93 6.78 -52.48 -0.36 0.57 16 37 H 0.17 1.21 7.10 -52.49 -0.37 0.83 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.19 2.08 8.06 -52.49 -0.42 1.65 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.85 5.40 -51.93 -0.28 0.57 16 43 H 0.07 1.82 6.88 -51.93 -0.36 1.46 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -34.61 366.55 -9.33 -43.93 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.07 Total: 2.72 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.64 Total: 2.97 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.19 Total: -61.43 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.61 -9.33 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033459922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.730 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds