Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34770 * 120.00245 * 2 1 4 4 O 1.21583 * 120.00292 * 185.45837 * 3 2 1 5 5 C 1.47598 * 119.99897 * 5.46001 * 3 2 1 6 6 C 1.39644 * 120.19417 * 54.95030 * 5 3 2 7 7 C 1.37848 * 119.91852 * 179.79082 * 6 5 3 8 8 C 1.38516 * 120.30766 * 0.48763 * 7 6 5 9 9 C 1.38081 * 120.39036 * 359.74573 * 8 7 6 10 10 C 1.38748 * 120.07664 * 0.02562 * 9 8 7 11 11 N 1.39703 * 120.15781 * 179.97438 * 10 9 8 12 12 C 1.35853 * 126.09819 * 6.57582 * 11 10 9 13 13 C 1.35288 * 107.61119 * 179.97438 * 12 11 10 14 14 C 1.39959 * 107.96731 * 359.97438 * 13 12 11 15 15 N 1.30822 * 108.36859 * 359.75960 * 14 13 12 16 16 C 1.46502 * 119.99551 * 180.02562 * 2 1 3 17 17 H 1.09002 * 110.63523 * 181.68947 * 16 2 1 18 18 C 1.55159 * 110.72283 * 305.02155 * 16 2 1 19 19 C 1.55133 * 101.48392 * 82.69873 * 18 16 2 20 20 N 1.47419 * 104.71968 * 37.29699 * 19 18 16 21 21 C 1.36941 * 125.64717 * 155.81979 * 20 19 18 22 22 H 1.08005 * 119.99795 * 189.84085 * 21 20 19 23 23 C 1.38809 * 120.00005 * 9.83944 * 21 20 19 24 24 N 1.31623 * 119.99816 * 8.41368 * 23 21 20 25 25 Si 1.86803 * 120.00100 * 188.41611 * 23 21 20 26 26 H 1.48501 * 109.46744 * 265.00389 * 25 23 21 27 27 H 1.48500 * 109.46907 * 25.00352 * 25 23 21 28 28 H 1.48501 * 109.47143 * 145.00634 * 25 23 21 29 29 C 1.47022 * 108.70522 * 335.55092 * 20 19 18 30 30 H 1.08999 * 109.47019 * 264.77968 * 1 2 3 31 31 H 1.09002 * 109.46641 * 24.78209 * 1 2 3 32 32 H 1.08997 * 109.46901 * 144.77981 * 1 2 3 33 33 H 1.08001 * 120.03765 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.84492 * 180.22814 * 7 6 5 35 35 H 1.08004 * 119.80195 * 179.76501 * 8 7 6 36 36 H 1.08003 * 119.96274 * 180.02562 * 9 8 7 37 37 H 1.07997 * 126.19943 * 359.93661 * 12 11 10 38 38 H 1.07999 * 126.01252 * 179.97438 * 13 12 11 39 39 H 1.07995 * 125.81387 * 180.02562 * 14 13 12 40 40 H 1.08996 * 111.00608 * 200.94268 * 18 16 2 41 41 H 1.09002 * 111.00225 * 324.75403 * 18 16 2 42 42 H 1.08999 * 110.49769 * 278.45553 * 19 18 16 43 43 H 1.09000 * 110.34171 * 156.05865 * 19 18 16 44 44 H 0.97006 * 119.99718 * 180.02562 * 24 23 21 45 45 H 1.09006 * 109.88257 * 120.70552 * 29 20 19 46 46 H 1.09007 * 109.88567 * 241.86702 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3507 1.1695 -0.1002 5 6 1.4060 2.4425 0.1216 6 6 0.5398 2.6550 1.1961 7 6 -0.1386 3.8499 1.3064 8 6 0.0269 4.8385 0.3505 9 6 0.8766 4.6401 -0.7198 10 6 1.5710 3.4453 -0.8441 11 7 2.4306 3.2426 -1.9265 12 6 2.7769 4.1688 -2.8581 13 6 3.6240 3.5754 -3.7302 14 6 3.8034 2.2485 -3.3228 15 7 3.0946 2.0499 -2.2413 16 6 2.1975 -1.2688 -0.0006 17 1 3.2726 -1.0918 0.0296 18 6 1.7507 -2.1612 1.1875 19 6 0.4679 -2.8189 0.6144 20 7 0.7745 -3.0618 -0.8070 21 6 0.1810 -4.0063 -1.6014 22 1 0.5813 -4.2156 -2.5824 23 6 -0.9349 -4.6946 -1.1457 24 7 -1.5221 -4.3286 -0.0261 25 14 -1.6032 -6.1406 -2.1215 26 1 -2.6948 -5.6735 -3.0135 27 1 -0.5139 -6.7314 -2.9397 28 1 -2.1324 -7.1662 -1.1869 29 6 1.8182 -2.1177 -1.2322 30 1 -0.3633 -0.0935 1.0234 31 1 -0.3633 0.9331 -0.4308 32 1 -0.3633 -0.8395 -0.5927 33 1 0.4044 1.8855 1.9417 34 1 -0.8054 4.0144 2.1399 35 1 -0.5115 5.7702 0.4429 36 1 1.0008 5.4158 -1.4609 37 1 2.4371 5.1932 -2.8960 38 1 4.0813 4.0433 -4.5894 39 1 4.4247 1.5149 -3.8148 40 1 2.5076 -2.9103 1.4198 41 1 1.5199 -1.5569 2.0648 42 1 -0.3823 -2.1435 0.7090 43 1 0.2644 -3.7603 1.1247 44 1 -2.3017 -4.8099 0.2926 45 1 2.6910 -2.6654 -1.5879 46 1 1.4351 -1.4729 -2.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033459922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = 116.199439 kcal Electronic energy + Delta-G solvation = -30318.633481 eV Core-core repulsion = 26404.478585 eV Total energy + Delta-G solvation = -3914.154897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53389 -41.27660 -39.78803 -38.64366 -35.93755 -34.52145 -34.07008 -32.40740 -31.12270 -30.90899 -29.99041 -29.56944 -27.65140 -26.37242 -24.97022 -24.41883 -22.70365 -22.08681 -21.56775 -21.36038 -20.19135 -19.11840 -18.90026 -18.33021 -17.50717 -16.82284 -16.70139 -16.25322 -16.18630 -15.92276 -15.69276 -15.64745 -15.23737 -14.86059 -14.48512 -14.30411 -14.25225 -13.89367 -13.75584 -13.63590 -13.48796 -13.33745 -13.24989 -12.95323 -12.90868 -12.77818 -12.43200 -12.31641 -12.08655 -11.90455 -11.86217 -11.57669 -11.45656 -11.29518 -10.80920 -10.65249 -10.10339 -10.01813 -9.55876 -9.05356 -8.85204 -7.87998 -5.22264 -0.29142 0.10681 1.26600 1.45726 1.46198 1.46848 1.56563 1.73422 1.89897 2.05456 2.48971 2.73679 3.31417 3.39398 3.48352 3.69245 3.85019 3.85602 3.95179 3.99576 4.09770 4.22225 4.24580 4.29227 4.34932 4.42539 4.57861 4.59759 4.65589 4.69981 4.74654 4.83896 4.87336 4.88943 5.00217 5.00970 5.08365 5.16701 5.27925 5.41154 5.43835 5.56357 5.61525 5.66775 5.77205 5.77338 6.19783 6.22022 6.46843 6.69456 7.09021 7.24571 7.74010 8.41656 9.23274 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.003445 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.844085 B = 8126.707947 C = 8910.081802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.592 5.592 3 C 0.569 3.431 4 O -0.551 6.551 5 C -0.161 4.161 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.061 4.061 9 C -0.145 4.145 10 C 0.172 3.828 11 N -0.345 5.345 12 C 0.044 3.956 13 C -0.257 4.257 14 C 0.027 3.973 15 N -0.301 5.301 16 C 0.146 3.854 17 H 0.096 0.904 18 C -0.140 4.140 19 C 0.176 3.824 20 N -0.616 5.616 21 C -0.248 4.248 22 H 0.070 0.930 23 C -0.053 4.053 24 N -0.940 5.940 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.274 1.274 28 H -0.290 1.290 29 C 0.135 3.865 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.220 0.780 38 H 0.184 0.816 39 H 0.196 0.804 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.250 0.750 45 H 0.029 0.971 46 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 24.253 0.531 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.323 5.323 3 C 0.358 3.642 4 O -0.428 6.428 5 C -0.167 4.167 6 C -0.090 4.090 7 C -0.145 4.145 8 C -0.080 4.080 9 C -0.166 4.166 10 C 0.078 3.922 11 N -0.122 5.122 12 C -0.096 4.096 13 C -0.285 4.285 14 C -0.161 4.161 15 N -0.119 5.119 16 C 0.041 3.959 17 H 0.114 0.886 18 C -0.179 4.179 19 C 0.052 3.948 20 N -0.343 5.343 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.247 4.247 24 N -0.588 5.588 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.199 1.199 28 H -0.216 1.216 29 C 0.008 3.992 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.196 0.804 36 H 0.183 0.817 37 H 0.237 0.763 38 H 0.201 0.799 39 H 0.212 0.788 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 3.130 23.269 1.399 23.521 hybrid contribution 0.030 -0.965 -1.326 1.640 sum 3.160 22.305 0.073 22.528 Atomic orbital electron populations 1.21840 0.78744 1.02222 1.02249 1.47601 1.07233 1.04790 1.72722 1.18295 0.86831 0.83747 0.75340 1.90700 1.15201 1.87243 1.49669 1.19661 1.03357 0.94516 0.99132 1.21408 0.92888 0.99320 0.95419 1.21565 0.99941 0.92093 1.00949 1.21634 0.94849 1.00368 0.91108 1.21180 0.98516 0.94722 1.02144 1.17916 0.92308 0.95752 0.86189 1.46235 1.35418 1.09380 1.21153 1.23490 0.98781 0.97614 0.89690 1.21996 1.06912 0.94114 1.05486 1.24627 0.99022 0.98890 0.93529 1.77996 1.12401 1.04502 1.17000 1.21754 0.96366 0.82526 0.95220 0.88627 1.23261 0.99324 0.98454 0.96861 1.21468 0.92596 0.97400 0.83382 1.44718 1.43459 1.37937 1.08211 1.19309 1.07516 1.12240 0.98583 0.91169 1.25528 0.97367 1.02621 0.99166 1.70112 1.22512 1.42418 1.23791 0.85139 0.78027 0.79047 0.77521 1.21351 1.19931 1.21593 1.21582 0.91639 0.90796 0.95146 0.91258 0.91119 0.92388 0.84409 0.81535 0.80361 0.81712 0.76342 0.79864 0.78751 0.90376 0.89726 0.95584 0.94576 0.94109 0.95317 0.97303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.26 7.32 127.77 0.94 4.19 16 2 N -0.59 -22.24 2.82 -819.63 -2.31 -24.55 16 3 C 0.57 21.36 5.75 86.71 0.50 21.86 16 4 O -0.55 -24.19 13.98 -3.98 -0.06 -24.24 16 5 C -0.16 -4.80 4.45 -19.99 -0.09 -4.89 16 6 C -0.07 -1.56 8.18 22.52 0.18 -1.38 16 7 C -0.13 -1.77 10.02 22.24 0.22 -1.54 16 8 C -0.06 -0.69 10.03 22.30 0.22 -0.46 16 9 C -0.15 -2.30 9.45 22.35 0.21 -2.09 16 10 C 0.17 4.57 6.68 38.49 0.26 4.83 16 11 N -0.34 -10.12 3.78 -186.72 -0.71 -10.82 16 12 C 0.04 0.90 10.81 83.39 0.90 1.80 16 13 C -0.26 -5.42 10.80 22.01 0.24 -5.18 16 14 C 0.03 0.78 12.02 85.26 1.02 1.81 16 15 N -0.30 -10.91 8.25 -56.98 -0.47 -11.38 16 16 C 0.15 5.91 3.58 46.18 0.17 6.08 16 17 H 0.10 3.97 7.01 -2.39 -0.02 3.95 16 18 C -0.14 -5.47 6.54 32.07 0.21 -5.26 16 19 C 0.18 8.56 4.57 86.93 0.40 8.95 16 20 N -0.62 -32.58 2.99 -691.55 -2.07 -34.65 16 21 C -0.25 -14.23 10.24 84.03 0.86 -13.37 16 22 H 0.07 3.98 7.84 -2.91 -0.02 3.95 16 23 C -0.05 -2.99 5.41 84.86 0.46 -2.53 16 24 N -0.94 -55.13 10.63 21.65 0.23 -54.90 16 25 Si 0.97 45.95 29.56 68.60 2.03 47.98 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 C 0.13 6.29 6.20 86.73 0.54 6.83 16 30 H 0.07 2.18 7.52 -2.39 -0.02 2.16 16 31 H 0.07 2.25 6.41 -2.39 -0.02 2.23 16 32 H 0.06 2.54 5.59 -2.39 -0.01 2.53 16 33 H 0.14 2.86 7.61 -2.91 -0.02 2.84 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.17 1.43 6.78 -2.91 -0.02 1.41 16 37 H 0.22 2.08 7.10 -2.91 -0.02 2.06 16 38 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.20 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.03 1.31 5.40 -2.39 -0.01 1.30 16 43 H 0.04 1.98 6.88 -2.39 -0.02 1.96 16 44 H 0.25 14.18 8.31 -92.70 -0.77 13.40 16 45 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.01 0.45 8.04 -2.38 -0.02 0.43 16 Total: -1.00 -80.90 366.55 4.88 -76.02 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.00 Total: 16.90 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.24 Total: 19.65 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -5.33 Total: -136.30 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.90 4.88 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033459922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.217 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds