Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99778 * 2 1 4 4 O 1.21583 * 120.00464 * 184.53298 * 3 2 1 5 5 C 1.47606 * 120.00342 * 4.53671 * 3 2 1 6 6 C 1.39638 * 120.18696 * 304.20467 * 5 3 2 7 7 C 1.37850 * 119.91577 * 180.02562 * 6 5 3 8 8 C 1.38524 * 120.30911 * 359.96771 * 7 6 5 9 9 C 1.38087 * 120.38836 * 359.79786 * 8 7 6 10 10 C 1.38756 * 120.06990 * 0.45918 * 9 8 7 11 11 N 1.39701 * 120.14858 * 179.79079 * 10 9 8 12 12 C 1.35860 * 126.10397 * 353.37195 * 11 10 9 13 13 C 1.35278 * 107.61180 * 180.25662 * 12 11 10 14 14 C 1.39963 * 107.96978 * 359.58882 * 13 12 11 15 15 N 1.30824 * 108.36957 * 0.41449 * 14 13 12 16 16 C 1.46497 * 120.00352 * 180.02562 * 2 1 3 17 17 H 1.09004 * 110.88583 * 183.88055 * 16 2 1 18 18 C 1.55157 * 111.00434 * 59.99854 * 16 2 1 19 19 C 1.54324 * 102.94294 * 277.43117 * 18 16 2 20 20 N 1.47018 * 107.26838 * 337.80557 * 19 18 16 21 21 C 1.36942 * 125.64746 * 178.98883 * 20 19 18 22 22 H 1.08001 * 120.00112 * 185.09230 * 21 20 19 23 23 C 1.38814 * 119.99840 * 5.09644 * 21 20 19 24 24 N 1.31622 * 119.99993 * 5.19012 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 185.19085 * 23 21 20 26 26 H 1.48500 * 109.46882 * 94.99717 * 25 23 21 27 27 H 1.48497 * 109.47225 * 214.99909 * 25 23 21 28 28 H 1.48498 * 109.46928 * 335.00086 * 25 23 21 29 29 C 1.47430 * 108.70772 * 358.94169 * 20 19 18 30 30 H 1.09000 * 109.46967 * 85.21988 * 1 2 3 31 31 H 1.09002 * 109.46403 * 205.21584 * 1 2 3 32 32 H 1.08994 * 109.47102 * 325.21311 * 1 2 3 33 33 H 1.07997 * 120.04410 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.84503 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.80180 * 180.02562 * 8 7 6 36 36 H 1.07994 * 119.95968 * 180.23151 * 9 8 7 37 37 H 1.07997 * 126.19403 * 0.02562 * 12 11 10 38 38 H 1.08005 * 126.01706 * 179.70050 * 13 12 11 39 39 H 1.08001 * 125.81524 * 180.17194 * 14 13 12 40 40 H 1.09006 * 110.71924 * 35.79141 * 18 16 2 41 41 H 1.08999 * 110.71896 * 158.88601 * 18 16 2 42 42 H 1.08997 * 109.88415 * 97.22219 * 19 18 16 43 43 H 1.09005 * 109.88109 * 218.23936 * 19 18 16 44 44 H 0.96997 * 119.99945 * 180.02562 * 24 23 21 45 45 H 1.08998 * 110.36244 * 265.29079 * 29 20 19 46 46 H 1.08996 * 110.36644 * 142.96540 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1690 -0.0832 5 6 1.4043 2.4435 0.1011 6 6 0.3998 2.7503 -0.8191 7 6 -0.2823 3.9441 -0.7197 8 6 0.0234 4.8420 0.2899 9 6 1.0111 4.5494 1.2095 10 6 1.7113 3.3548 1.1213 11 7 2.7138 3.0590 2.0482 12 6 3.1921 3.8968 3.0048 13 6 4.1543 3.2334 3.6860 14 6 4.2638 1.9498 3.1388 15 7 3.4053 1.8455 2.1572 16 6 2.1976 -1.2687 -0.0006 17 1 3.2718 -1.0971 0.0684 18 6 1.8485 -2.1119 -1.2553 19 6 0.5312 -2.8061 -0.8497 20 7 0.4795 -2.8197 0.6195 21 6 -0.5402 -3.3307 1.3774 22 1 -0.5227 -3.2195 2.4516 23 6 -1.5962 -3.9916 0.7652 24 7 -1.5685 -4.2172 -0.5313 25 14 -3.0567 -4.5609 1.7812 26 1 -4.1294 -3.5355 1.7238 27 1 -3.5687 -5.8440 1.2364 28 1 -2.6330 -4.7557 3.1910 29 6 1.7076 -2.1932 1.1417 30 1 -0.3633 0.0856 -1.0241 31 1 -0.3632 -0.9298 0.4378 32 1 -0.3633 0.8440 0.5863 33 1 0.1581 2.0536 -1.6081 34 1 -1.0587 4.1804 -1.4323 35 1 -0.5164 5.7748 0.3603 36 1 1.2412 5.2528 1.9960 37 1 2.8660 4.9103 3.1860 38 1 4.7346 3.6247 4.5086 39 1 4.9441 1.1783 3.4681 40 1 1.6944 -1.4685 -2.1217 41 1 2.6287 -2.8461 -1.4558 42 1 -0.3183 -2.2494 -1.2454 43 1 0.5166 -3.8264 -1.2329 44 1 -2.3066 -4.6787 -0.9592 45 1 2.4569 -2.9535 1.3623 46 1 1.4851 -1.6084 2.0341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033459923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 137.632582 kcal Electronic energy + Delta-G solvation = -30507.028269 eV Core-core repulsion = 26593.802784 eV Total energy + Delta-G solvation = -3913.225486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56831 -39.96568 -38.62174 -37.11937 -34.19246 -33.56019 -32.35841 -31.24185 -30.12772 -29.30402 -29.02764 -27.72639 -25.94481 -24.64970 -23.75263 -23.52511 -21.50816 -20.68185 -20.24675 -20.03607 -18.87984 -18.02587 -17.12649 -16.84486 -16.08194 -15.66814 -15.32865 -15.23530 -14.77801 -14.64707 -14.43059 -13.99037 -13.85203 -13.73284 -13.56441 -12.95356 -12.86185 -12.78142 -12.55689 -12.05859 -11.98587 -11.91000 -11.66605 -11.56877 -11.38023 -10.93113 -10.89757 -10.70292 -10.47209 -10.32609 -10.19443 -10.12386 -9.89295 -9.61234 -9.41406 -9.15989 -9.06397 -8.67802 -8.14741 -8.01908 -6.79621 -5.73679 -3.09181 0.61675 0.93295 2.13949 2.34500 2.80727 3.08152 3.37077 3.38398 3.43892 3.45389 3.71695 4.29867 4.47527 4.52830 4.69832 4.73510 4.80326 5.06942 5.11367 5.26858 5.43493 5.45551 5.48655 5.55026 5.58667 5.64526 5.77285 5.83270 5.84398 5.95673 6.00634 6.05742 6.12011 6.19636 6.29575 6.42029 6.46240 6.59568 6.60710 6.61508 6.71872 6.85153 7.07060 7.22839 7.50391 7.64575 7.65945 7.81132 7.97241 8.22714 8.67436 9.18765 9.78661 10.44828 11.36297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003697 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.375923 B = 7571.935051 C = 8065.967162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.582 5.582 3 C 0.566 3.434 4 O -0.520 6.520 5 C -0.122 4.122 6 C -0.063 4.063 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.151 4.151 10 C 0.202 3.798 11 N -0.330 5.330 12 C 0.041 3.959 13 C -0.255 4.255 14 C 0.043 3.957 15 N -0.235 5.235 16 C 0.131 3.869 17 H 0.099 0.901 18 C -0.155 4.155 19 C 0.173 3.827 20 N -0.601 5.601 21 C -0.231 4.231 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.045 0.955 31 H 0.126 0.874 32 H 0.049 0.951 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.186 0.814 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 19.429 2.640 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.313 5.313 3 C 0.353 3.647 4 O -0.396 6.396 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.154 4.154 8 C -0.098 4.098 9 C -0.172 4.172 10 C 0.107 3.893 11 N -0.106 5.106 12 C -0.100 4.100 13 C -0.283 4.283 14 C -0.146 4.146 15 N -0.052 5.052 16 C 0.027 3.973 17 H 0.117 0.883 18 C -0.195 4.195 19 C 0.048 3.952 20 N -0.328 5.328 21 C -0.359 4.359 22 H 0.095 0.905 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.000 4.000 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.192 0.808 38 H 0.169 0.831 39 H 0.203 0.797 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.479 18.523 1.628 19.385 hybrid contribution -0.572 0.260 1.171 1.329 sum 4.907 18.784 2.799 19.615 Atomic orbital electron populations 1.22313 0.78966 1.06100 1.00919 1.47481 1.07267 1.04747 1.71806 1.17769 0.86913 0.83027 0.77038 1.90731 1.13175 1.86769 1.48901 1.19753 0.99556 0.96366 0.97009 1.21313 0.92411 0.96993 0.97454 1.21144 1.00853 0.94031 0.99391 1.21058 0.95763 0.99422 0.93508 1.20715 0.98593 0.95704 1.02184 1.17387 0.88594 0.94332 0.88970 1.46019 1.28614 1.11162 1.24833 1.22682 0.97872 0.97678 0.91740 1.21585 1.04628 0.95613 1.06500 1.24191 0.98690 0.97779 0.93898 1.78073 1.08642 1.00243 1.18220 1.22160 0.96177 0.82243 0.96745 0.88334 1.23245 1.00795 0.98655 0.96764 1.21228 0.91243 0.98912 0.83775 1.44624 1.17301 1.69031 1.01836 1.19050 0.97285 1.29267 0.90280 0.90510 1.24786 0.99035 1.00279 0.96028 1.69972 1.31980 1.46291 1.08287 0.86144 0.82796 0.77955 0.79156 1.21657 1.21758 1.20665 1.21879 0.89948 0.93417 0.94789 0.93663 0.85586 0.93197 0.84417 0.84853 0.84785 0.84939 0.80834 0.83060 0.79675 0.92098 0.91412 0.94510 0.92713 0.93762 0.95261 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 7.53 59.85 0.45 1.54 16 2 N -0.58 -10.87 2.91 -172.68 -0.50 -11.38 16 3 C 0.57 10.55 5.75 -12.44 -0.07 10.48 16 4 O -0.52 -11.02 14.05 5.29 0.07 -10.94 16 5 C -0.12 -1.90 4.66 -104.82 -0.49 -2.39 16 6 C -0.06 -0.79 8.00 -39.20 -0.31 -1.10 16 7 C -0.14 -1.31 10.02 -39.62 -0.40 -1.70 16 8 C -0.08 -0.69 10.03 -39.53 -0.40 -1.08 16 9 C -0.15 -1.56 9.45 -39.45 -0.37 -1.93 16 10 C 0.20 2.89 6.68 -83.35 -0.56 2.33 16 11 N -0.33 -4.98 3.78 -10.37 -0.04 -5.02 16 12 C 0.04 0.46 10.81 -16.82 -0.18 0.28 16 13 C -0.25 -2.84 10.80 -39.99 -0.43 -3.28 16 14 C 0.04 0.60 12.02 -17.33 -0.21 0.39 16 15 N -0.23 -4.08 8.28 30.64 0.25 -3.82 16 16 C 0.13 2.56 3.65 -65.78 -0.24 2.32 16 17 H 0.10 1.95 7.04 -51.93 -0.37 1.58 16 18 C -0.16 -3.02 6.48 -24.90 -0.16 -3.19 16 19 C 0.17 4.06 4.34 -3.07 -0.01 4.05 16 20 N -0.60 -14.76 1.87 -170.07 -0.32 -15.08 16 21 C -0.23 -6.20 9.80 -15.06 -0.15 -6.35 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 23 C 0.00 -0.13 5.46 -17.43 -0.10 -0.22 16 24 N -0.92 -26.04 10.41 55.49 0.58 -25.46 16 25 Si 0.91 21.61 29.56 -169.99 -5.02 16.58 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.13 2.71 6.43 -2.53 -0.02 2.69 16 30 H 0.04 0.76 7.37 -51.93 -0.38 0.38 16 31 H 0.13 2.77 4.43 -51.93 -0.23 2.54 16 32 H 0.05 0.84 6.49 -51.93 -0.34 0.50 16 33 H 0.14 1.65 7.01 -52.49 -0.37 1.28 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.98 6.78 -52.49 -0.36 0.62 16 37 H 0.17 1.24 7.10 -52.49 -0.37 0.87 16 38 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.92 6.84 -51.93 -0.36 0.57 16 43 H 0.05 1.45 7.10 -51.93 -0.37 1.09 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -33.70 365.20 -9.18 -42.88 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.06 Total: 3.89 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.64 Total: 2.84 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.03 Total: -60.76 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.70 -9.18 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033459923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.517 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds