Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99778 * 2 1 4 4 O 1.21583 * 120.00464 * 184.53298 * 3 2 1 5 5 C 1.47606 * 120.00342 * 4.53671 * 3 2 1 6 6 C 1.39638 * 120.18696 * 304.20467 * 5 3 2 7 7 C 1.37850 * 119.91577 * 180.02562 * 6 5 3 8 8 C 1.38524 * 120.30911 * 359.96771 * 7 6 5 9 9 C 1.38087 * 120.38836 * 359.79786 * 8 7 6 10 10 C 1.38756 * 120.06990 * 0.45918 * 9 8 7 11 11 N 1.39701 * 120.14858 * 179.79079 * 10 9 8 12 12 C 1.35860 * 126.10397 * 353.37195 * 11 10 9 13 13 C 1.35278 * 107.61180 * 180.25662 * 12 11 10 14 14 C 1.39963 * 107.96978 * 359.58882 * 13 12 11 15 15 N 1.30824 * 108.36957 * 0.41449 * 14 13 12 16 16 C 1.46497 * 120.00352 * 180.02562 * 2 1 3 17 17 H 1.09004 * 110.88583 * 183.88055 * 16 2 1 18 18 C 1.55157 * 111.00434 * 59.99854 * 16 2 1 19 19 C 1.54324 * 102.94294 * 277.43117 * 18 16 2 20 20 N 1.47018 * 107.26838 * 337.80557 * 19 18 16 21 21 C 1.36942 * 125.64746 * 178.98883 * 20 19 18 22 22 H 1.08001 * 120.00112 * 185.09230 * 21 20 19 23 23 C 1.38814 * 119.99840 * 5.09644 * 21 20 19 24 24 N 1.31622 * 119.99993 * 5.19012 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 185.19085 * 23 21 20 26 26 H 1.48500 * 109.46882 * 94.99717 * 25 23 21 27 27 H 1.48497 * 109.47225 * 214.99909 * 25 23 21 28 28 H 1.48498 * 109.46928 * 335.00086 * 25 23 21 29 29 C 1.47430 * 108.70772 * 358.94169 * 20 19 18 30 30 H 1.09000 * 109.46967 * 85.21988 * 1 2 3 31 31 H 1.09002 * 109.46403 * 205.21584 * 1 2 3 32 32 H 1.08994 * 109.47102 * 325.21311 * 1 2 3 33 33 H 1.07997 * 120.04410 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.84503 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.80180 * 180.02562 * 8 7 6 36 36 H 1.07994 * 119.95968 * 180.23151 * 9 8 7 37 37 H 1.07997 * 126.19403 * 0.02562 * 12 11 10 38 38 H 1.08005 * 126.01706 * 179.70050 * 13 12 11 39 39 H 1.08001 * 125.81524 * 180.17194 * 14 13 12 40 40 H 1.09006 * 110.71924 * 35.79141 * 18 16 2 41 41 H 1.08999 * 110.71896 * 158.88601 * 18 16 2 42 42 H 1.08997 * 109.88415 * 97.22219 * 19 18 16 43 43 H 1.09005 * 109.88109 * 218.23936 * 19 18 16 44 44 H 0.96997 * 119.99945 * 180.02562 * 24 23 21 45 45 H 1.08998 * 110.36244 * 265.29079 * 29 20 19 46 46 H 1.08996 * 110.36644 * 142.96540 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1690 -0.0832 5 6 1.4043 2.4435 0.1011 6 6 0.3998 2.7503 -0.8191 7 6 -0.2823 3.9441 -0.7197 8 6 0.0234 4.8420 0.2899 9 6 1.0111 4.5494 1.2095 10 6 1.7113 3.3548 1.1213 11 7 2.7138 3.0590 2.0482 12 6 3.1921 3.8968 3.0048 13 6 4.1543 3.2334 3.6860 14 6 4.2638 1.9498 3.1388 15 7 3.4053 1.8455 2.1572 16 6 2.1976 -1.2687 -0.0006 17 1 3.2718 -1.0971 0.0684 18 6 1.8485 -2.1119 -1.2553 19 6 0.5312 -2.8061 -0.8497 20 7 0.4795 -2.8197 0.6195 21 6 -0.5402 -3.3307 1.3774 22 1 -0.5227 -3.2195 2.4516 23 6 -1.5962 -3.9916 0.7652 24 7 -1.5685 -4.2172 -0.5313 25 14 -3.0567 -4.5609 1.7812 26 1 -4.1294 -3.5355 1.7238 27 1 -3.5687 -5.8440 1.2364 28 1 -2.6330 -4.7557 3.1910 29 6 1.7076 -2.1932 1.1417 30 1 -0.3633 0.0856 -1.0241 31 1 -0.3632 -0.9298 0.4378 32 1 -0.3633 0.8440 0.5863 33 1 0.1581 2.0536 -1.6081 34 1 -1.0587 4.1804 -1.4323 35 1 -0.5164 5.7748 0.3603 36 1 1.2412 5.2528 1.9960 37 1 2.8660 4.9103 3.1860 38 1 4.7346 3.6247 4.5086 39 1 4.9441 1.1783 3.4681 40 1 1.6944 -1.4685 -2.1217 41 1 2.6287 -2.8461 -1.4558 42 1 -0.3183 -2.2494 -1.2454 43 1 0.5166 -3.8264 -1.2329 44 1 -2.3066 -4.6787 -0.9592 45 1 2.4569 -2.9535 1.3623 46 1 1.4851 -1.6084 2.0341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033459923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = 118.566615 kcal Electronic energy + Delta-G solvation = -30507.855032 eV Core-core repulsion = 26593.802784 eV Total energy + Delta-G solvation = -3914.052248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52143 -41.25761 -39.80286 -38.65997 -35.81183 -34.52089 -34.10144 -32.38846 -31.17073 -30.96930 -29.98689 -29.44445 -27.52396 -26.39367 -24.98310 -24.40821 -22.74627 -21.96938 -21.55850 -21.37334 -20.22092 -19.06615 -18.90636 -18.31761 -17.47232 -16.74590 -16.66324 -16.29024 -16.19725 -15.88352 -15.73462 -15.56682 -15.27056 -14.86308 -14.50707 -14.38227 -14.16917 -13.87439 -13.68475 -13.62570 -13.50617 -13.43356 -13.07285 -12.91583 -12.83060 -12.78480 -12.36068 -12.30563 -12.02439 -11.97884 -11.81947 -11.53493 -11.45446 -11.29142 -10.77953 -10.72753 -10.09661 -10.01728 -9.59221 -9.04924 -8.80010 -7.83116 -5.20495 -0.28307 0.10142 1.27152 1.46385 1.47589 1.48056 1.57212 1.74578 1.91460 2.10469 2.49543 2.73524 3.34707 3.40416 3.51290 3.64169 3.85334 3.89400 3.94742 4.00222 4.09692 4.25451 4.28708 4.33965 4.36144 4.42518 4.59527 4.64094 4.65970 4.71617 4.75910 4.84389 4.85702 4.95615 5.01555 5.02762 5.15853 5.21024 5.26838 5.40284 5.45359 5.59516 5.64775 5.72381 5.77185 5.77694 6.18589 6.22368 6.52282 6.70814 7.10296 7.27081 7.74823 8.40620 9.25538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003697 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.375923 B = 7571.935051 C = 8065.967162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.586 5.586 3 C 0.568 3.432 4 O -0.553 6.553 5 C -0.161 4.161 6 C -0.075 4.075 7 C -0.129 4.129 8 C -0.062 4.062 9 C -0.145 4.145 10 C 0.174 3.826 11 N -0.345 5.345 12 C 0.043 3.957 13 C -0.257 4.257 14 C 0.029 3.971 15 N -0.301 5.301 16 C 0.142 3.858 17 H 0.097 0.903 18 C -0.140 4.140 19 C 0.188 3.812 20 N -0.611 5.611 21 C -0.241 4.241 22 H 0.075 0.925 23 C -0.053 4.053 24 N -0.944 5.944 25 Si 0.972 3.028 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.219 0.781 38 H 0.184 0.816 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.248 0.752 45 H 0.033 0.967 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 22.970 3.584 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.318 5.318 3 C 0.357 3.643 4 O -0.431 6.431 5 C -0.166 4.166 6 C -0.094 4.094 7 C -0.147 4.147 8 C -0.080 4.080 9 C -0.165 4.165 10 C 0.080 3.920 11 N -0.122 5.122 12 C -0.097 4.097 13 C -0.285 4.285 14 C -0.159 4.159 15 N -0.119 5.119 16 C 0.037 3.963 17 H 0.115 0.885 18 C -0.179 4.179 19 C 0.064 3.936 20 N -0.338 5.338 21 C -0.370 4.370 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.592 5.592 25 Si 0.801 3.199 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.198 1.198 29 C 0.005 3.995 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.183 0.817 35 H 0.197 0.803 36 H 0.184 0.816 37 H 0.235 0.765 38 H 0.202 0.798 39 H 0.215 0.785 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.531 22.084 2.589 22.692 hybrid contribution -0.258 -0.726 0.916 1.197 sum 4.273 21.358 3.505 22.062 Atomic orbital electron populations 1.22064 0.78738 1.04503 1.01332 1.47512 1.07301 1.04697 1.72252 1.18268 0.86689 0.83840 0.75508 1.90686 1.14767 1.87388 1.50251 1.19667 1.01655 0.95568 0.99703 1.21405 0.92411 0.98534 0.97005 1.21552 1.00481 0.92656 1.00014 1.21626 0.94421 1.00347 0.91623 1.21184 0.97780 0.94449 1.03129 1.17874 0.89459 0.95626 0.89058 1.46207 1.29009 1.11144 1.25813 1.23486 0.97068 0.98950 0.90167 1.21997 1.04926 0.94375 1.07178 1.24650 0.98247 0.99537 0.93477 1.77968 1.10789 1.02712 1.20440 1.21935 0.96122 0.82600 0.95622 0.88455 1.23116 0.98957 0.98758 0.97118 1.20933 0.92558 0.96938 0.83209 1.44749 1.17819 1.68956 1.02286 1.19305 0.98125 1.29015 0.90546 0.90684 1.25508 1.01383 1.00728 0.97050 1.70163 1.32406 1.47014 1.09625 0.85154 0.79639 0.77076 0.78012 1.21143 1.22188 1.19834 1.21880 0.88944 0.93533 0.95117 0.92708 0.89172 0.91958 0.84838 0.81716 0.80330 0.81594 0.76456 0.79840 0.78479 0.90833 0.90007 0.96523 0.96130 0.94285 0.94913 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.87 7.53 127.77 0.96 3.83 16 2 N -0.59 -22.67 2.91 -818.51 -2.38 -25.05 16 3 C 0.57 21.86 5.75 86.72 0.50 22.36 16 4 O -0.55 -24.45 14.05 -3.98 -0.06 -24.51 16 5 C -0.16 -5.01 4.66 -19.99 -0.09 -5.10 16 6 C -0.07 -1.79 8.00 22.52 0.18 -1.61 16 7 C -0.13 -2.02 10.02 22.25 0.22 -1.80 16 8 C -0.06 -0.77 10.03 22.30 0.22 -0.55 16 9 C -0.14 -2.43 9.45 22.36 0.21 -2.22 16 10 C 0.17 4.77 6.68 38.49 0.26 5.02 16 11 N -0.34 -10.18 3.78 -186.73 -0.71 -10.88 16 12 C 0.04 0.88 10.81 83.39 0.90 1.78 16 13 C -0.26 -5.30 10.80 22.00 0.24 -5.06 16 14 C 0.03 0.81 12.02 85.26 1.02 1.83 16 15 N -0.30 -10.76 8.28 -56.97 -0.47 -11.23 16 16 C 0.14 5.73 3.65 46.38 0.17 5.90 16 17 H 0.10 4.00 7.04 -2.39 -0.02 3.98 16 18 C -0.14 -5.59 6.48 31.78 0.21 -5.38 16 19 C 0.19 9.20 4.34 86.73 0.38 9.58 16 20 N -0.61 -31.13 1.87 -691.99 -1.29 -32.42 16 21 C -0.24 -13.32 9.80 84.03 0.82 -12.49 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.05 -2.93 5.46 84.86 0.46 -2.46 16 24 N -0.94 -55.08 10.41 21.65 0.23 -54.86 16 25 Si 0.97 45.02 29.56 68.60 2.03 47.05 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 C 0.13 5.85 6.43 86.85 0.56 6.41 16 30 H 0.05 1.90 7.37 -2.39 -0.02 1.88 16 31 H 0.09 4.11 4.43 -2.39 -0.01 4.10 16 32 H 0.06 2.14 6.49 -2.39 -0.02 2.12 16 33 H 0.13 3.16 7.01 -2.91 -0.02 3.14 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.17 1.55 6.78 -2.91 -0.02 1.53 16 37 H 0.22 2.12 7.10 -2.91 -0.02 2.10 16 38 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.02 0.87 6.84 -2.39 -0.02 0.85 16 43 H 0.02 1.14 7.10 -2.38 -0.02 1.12 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 46 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.32 365.20 5.57 -72.75 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.00 Total: 19.13 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 7.22 Total: 20.02 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -4.63 Total: -134.44 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.32 5.57 -72.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033459923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.313 kcal (2) G-P(sol) polarization free energy of solvation -78.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds