Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 120.00104 * 2 1 4 4 O 1.21703 * 119.99892 * 179.71090 * 3 2 1 5 5 C 1.46658 * 120.00084 * 359.72084 * 3 2 1 6 6 C 1.37838 * 126.81937 * 189.70422 * 5 3 2 7 7 N 1.32966 * 107.98989 * 179.97438 * 6 5 3 8 8 C 1.31802 * 109.77174 * 0.02562 * 7 6 5 9 9 C 1.47825 * 125.50296 * 179.97438 * 8 7 6 10 10 C 1.39581 * 120.14426 * 179.74250 * 9 8 7 11 11 C 1.37959 * 119.85410 * 179.72571 * 10 9 8 12 12 C 1.38360 * 120.14227 * 0.57801 * 11 10 9 13 13 C 1.38360 * 120.29659 * 359.70049 * 12 11 10 14 14 C 1.37956 * 120.14326 * 359.97438 * 13 12 11 15 15 N 1.35902 * 108.98567 * 359.74477 * 8 7 6 16 16 H 0.97003 * 126.55315 * 180.27209 * 15 8 7 17 17 C 1.46500 * 119.99542 * 180.02562 * 2 1 3 18 18 H 1.09004 * 110.77551 * 181.78296 * 17 2 1 19 19 C 1.55158 * 110.72149 * 305.02423 * 17 2 1 20 20 C 1.55129 * 101.48388 * 82.69950 * 19 17 2 21 21 N 1.47420 * 104.72382 * 37.29483 * 20 19 17 22 22 C 1.36938 * 125.64578 * 155.81657 * 21 20 19 23 23 H 1.07993 * 119.99942 * 191.79485 * 22 21 20 24 24 C 1.38811 * 119.99837 * 11.80241 * 22 21 20 25 25 N 1.31627 * 119.99571 * 204.88546 * 24 22 21 26 26 Si 1.86794 * 120.00512 * 24.88231 * 24 22 21 27 27 H 1.48500 * 109.47089 * 270.00250 * 26 24 22 28 28 H 1.48503 * 109.47150 * 30.00059 * 26 24 22 29 29 H 1.48501 * 109.47496 * 150.00019 * 26 24 22 30 30 C 1.47020 * 108.70422 * 335.55075 * 21 20 19 31 31 H 1.09000 * 109.46860 * 276.06311 * 1 2 3 32 32 H 1.09000 * 109.46947 * 36.05674 * 1 2 3 33 33 H 1.08991 * 109.47191 * 156.05652 * 1 2 3 34 34 H 1.07997 * 126.00450 * 359.93327 * 6 5 3 35 35 H 1.07997 * 120.07459 * 0.02577 * 10 9 8 36 36 H 1.07994 * 119.92938 * 180.30010 * 11 10 9 37 37 H 1.07998 * 119.85340 * 179.72355 * 12 11 10 38 38 H 1.08003 * 119.93396 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.07683 * 180.02562 * 14 13 12 40 40 H 1.08997 * 111.00235 * 200.93716 * 19 17 2 41 41 H 1.08995 * 111.00077 * 324.74633 * 19 17 2 42 42 H 1.09000 * 110.49362 * 278.44627 * 20 19 17 43 43 H 1.09005 * 110.33930 * 156.06229 * 20 19 17 44 44 H 0.97003 * 120.00053 * 354.93286 * 25 24 22 45 45 H 1.09001 * 109.88084 * 120.70193 * 30 21 20 46 46 H 1.08998 * 109.88339 * 241.86778 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3560 1.1671 0.0053 5 6 1.4057 2.4373 -0.0062 6 6 1.9354 3.6960 -0.1930 7 7 0.9395 4.5745 -0.1276 8 6 -0.1972 3.9444 0.0915 9 6 -1.5223 4.5858 0.2257 10 6 -2.6583 3.8070 0.4523 11 6 -3.8911 4.4123 0.5823 12 6 -4.0047 5.7872 0.4767 13 6 -2.8835 6.5645 0.2464 14 6 -1.6438 5.9724 0.1211 15 7 0.0451 2.6094 0.1689 16 1 -0.6109 1.9110 0.3199 17 6 2.1975 -1.2688 -0.0006 18 1 3.2730 -1.0944 0.0312 19 6 1.7506 -2.1612 1.1874 20 6 0.4679 -2.8189 0.6143 21 7 0.7744 -3.0617 -0.8071 22 6 0.1810 -4.0062 -1.6014 23 1 0.5997 -4.2381 -2.5695 24 6 -0.9589 -4.6656 -1.1623 25 7 -1.2530 -5.8580 -1.6359 26 14 -2.0753 -3.8609 0.1007 27 1 -1.6316 -4.2395 1.4663 28 1 -2.0097 -2.3849 -0.0496 29 1 -3.4723 -4.3183 -0.1105 30 6 1.8182 -2.1176 -1.2323 31 1 -0.3633 0.1085 1.0219 32 1 -0.3633 0.8308 -0.6049 33 1 -0.3633 -0.9391 -0.4170 34 1 2.9766 3.9280 -0.3621 35 1 -2.5716 2.7333 0.5305 36 1 -4.7701 3.8113 0.7624 37 1 -4.9728 6.2557 0.5748 38 1 -2.9789 7.6373 0.1654 39 1 -0.7693 6.5803 -0.0582 40 1 2.5075 -2.9103 1.4196 41 1 1.5200 -1.5569 2.0647 42 1 -0.3824 -2.1435 0.7091 43 1 0.2643 -3.7603 1.1247 44 1 -0.7151 -6.2446 -2.3445 45 1 2.6909 -2.6654 -1.5880 46 1 1.4349 -1.4728 -2.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033462875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 89.418403 kcal Electronic energy + Delta-G solvation = -29382.494245 eV Core-core repulsion = 25467.178036 eV Total energy + Delta-G solvation = -3915.316209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.40009 -41.23284 -39.82237 -39.18739 -36.42970 -34.68068 -33.76374 -33.15149 -31.85155 -31.39726 -30.28260 -29.74415 -28.08713 -26.00752 -24.78438 -24.06009 -23.37202 -22.64984 -22.30627 -21.29861 -20.83527 -19.57949 -19.06687 -18.30124 -17.68259 -17.15509 -17.05899 -16.73274 -16.40423 -16.07146 -15.85751 -15.67950 -15.38806 -15.24563 -14.94501 -14.55212 -14.41380 -14.31910 -14.27262 -13.80104 -13.72752 -13.67116 -13.42146 -13.05122 -12.83947 -12.60773 -12.43763 -12.33376 -12.05129 -11.79694 -11.59341 -11.51640 -11.37719 -11.24982 -11.12992 -10.67386 -10.62559 -9.97067 -9.92363 -9.18088 -9.08625 -8.65404 -5.46356 -0.39727 0.44022 0.50444 1.38035 1.47203 1.52442 1.69145 1.71227 1.83497 2.12618 2.54890 2.91052 3.01791 3.03677 3.26434 3.36127 3.61331 3.67997 3.77359 3.80626 3.96267 4.07577 4.12695 4.16916 4.20751 4.28800 4.32019 4.38109 4.44615 4.52610 4.54567 4.66259 4.71172 4.84058 4.88023 4.89716 4.92054 5.09568 5.11361 5.28011 5.36757 5.46985 5.49880 5.55393 5.57553 5.95280 6.02022 6.07317 6.10126 6.66940 6.80494 6.83736 7.43833 8.09363 8.83572 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003329 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.329408 B = 8407.694661 C =10304.203376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.593 5.593 3 C 0.598 3.402 4 O -0.557 6.557 5 C -0.089 4.089 6 C 0.069 3.931 7 N -0.501 5.501 8 C 0.277 3.723 9 C -0.048 4.048 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.103 4.103 13 C -0.121 4.121 14 C -0.085 4.085 15 N -0.543 5.543 16 H 0.436 0.564 17 C 0.139 3.861 18 H 0.116 0.884 19 C -0.125 4.125 20 C 0.088 3.912 21 N -0.621 5.621 22 C -0.319 4.319 23 H 0.036 0.964 24 C -0.078 4.078 25 N -0.957 5.957 26 Si 1.104 2.896 27 H -0.272 1.272 28 H -0.247 1.247 29 H -0.309 1.309 30 C 0.126 3.874 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.196 0.804 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.246 0.754 45 H 0.034 0.966 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 25.632 8.945 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.324 5.324 3 C 0.388 3.612 4 O -0.435 6.435 5 C -0.205 4.205 6 C -0.087 4.087 7 N -0.220 5.220 8 C 0.017 3.983 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.122 4.122 13 C -0.139 4.139 14 C -0.105 4.105 15 N -0.156 5.156 16 H 0.286 0.714 17 C 0.036 3.964 18 H 0.134 0.866 19 C -0.164 4.164 20 C -0.036 4.036 21 N -0.349 5.349 22 C -0.448 4.448 23 H 0.054 0.946 24 C -0.271 4.271 25 N -0.600 5.600 26 Si 0.929 3.071 27 H -0.198 1.198 28 H -0.172 1.172 29 H -0.238 1.238 30 C 0.000 4.000 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.213 0.787 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.545 26.093 9.695 28.383 hybrid contribution 1.342 -1.871 -1.681 2.851 sum -4.203 24.222 8.014 25.857 Atomic orbital electron populations 1.22682 0.79430 1.05015 1.03267 1.47669 1.07298 1.05215 1.72216 1.16983 0.86302 0.81923 0.76029 1.90817 1.13392 1.86855 1.52475 1.21218 0.83665 0.96387 1.19248 1.23144 0.99879 0.86217 0.99425 1.70282 0.97672 1.33225 1.20777 1.21845 0.94992 0.80126 1.01373 1.17777 0.87103 0.94221 1.05913 1.21345 0.92253 1.00062 0.99711 1.21397 0.97342 0.95728 0.99336 1.21739 0.99928 0.93847 0.96674 1.21462 0.91560 1.01659 0.99243 1.21346 0.99183 0.92737 0.97262 1.44468 1.08010 1.09385 1.53741 0.71360 1.21986 0.97535 0.81759 0.95169 0.86620 1.23089 0.97642 0.98630 0.97039 1.22489 0.97628 0.98873 0.84600 1.44810 1.44411 1.38858 1.06852 1.19854 1.08563 1.15132 1.01226 0.94574 1.27279 0.98514 0.95328 1.06003 1.71034 1.46501 1.13680 1.28832 0.83439 0.73482 0.76231 0.73967 1.19844 1.17152 1.23800 1.21732 0.91898 0.90868 0.95518 0.89088 0.90278 0.89039 0.78680 0.85088 0.83083 0.82898 0.83049 0.84995 0.89038 0.88057 0.92856 0.93619 0.94423 0.94785 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 7.16 127.77 0.92 1.83 16 2 N -0.59 -16.46 2.82 -820.66 -2.32 -18.78 16 3 C 0.60 17.44 7.65 86.44 0.66 18.10 16 4 O -0.56 -19.19 16.30 -4.36 -0.07 -19.26 16 5 C -0.09 -2.26 6.69 40.23 0.27 -2.00 16 6 C 0.07 1.77 11.70 84.43 0.99 2.76 16 7 N -0.50 -12.76 10.79 -187.95 -2.03 -14.79 16 8 C 0.28 6.17 7.74 136.59 1.06 7.23 16 9 C -0.05 -0.88 5.87 -20.09 -0.12 -1.00 16 10 C -0.11 -1.61 9.69 22.53 0.22 -1.39 16 11 C -0.12 -1.30 10.03 22.23 0.22 -1.08 16 12 C -0.10 -0.98 10.04 22.33 0.22 -0.76 16 13 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 14 C -0.09 -1.39 9.69 22.53 0.22 -1.17 16 15 N -0.54 -11.31 5.04 -176.47 -0.89 -12.20 16 16 H 0.44 7.10 4.17 -92.71 -0.39 6.71 16 17 C 0.14 4.29 3.58 46.18 0.17 4.46 16 18 H 0.12 3.56 7.00 -2.38 -0.02 3.54 16 19 C -0.13 -3.60 6.54 32.06 0.21 -3.39 16 20 C 0.09 3.25 3.81 86.93 0.33 3.58 16 21 N -0.62 -28.09 2.86 -691.57 -1.98 -30.06 16 22 C -0.32 -17.88 10.44 84.03 0.88 -17.00 16 23 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 24 C -0.08 -4.44 5.42 84.86 0.46 -3.98 16 25 N -0.96 -60.15 13.70 21.65 0.30 -59.85 16 26 Si 1.10 48.64 24.69 68.60 1.69 50.33 16 27 H -0.27 -11.04 6.59 99.48 0.66 -10.39 16 28 H -0.25 -8.98 5.72 99.48 0.57 -8.41 16 29 H -0.31 -14.18 7.11 99.48 0.71 -13.47 16 30 C 0.13 4.87 6.30 86.73 0.55 5.42 16 31 H 0.09 1.57 7.80 -2.39 -0.02 1.55 16 32 H 0.08 1.60 5.11 -2.39 -0.01 1.59 16 33 H 0.09 2.75 4.25 -2.39 -0.01 2.74 16 34 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.13 1.41 7.14 -2.91 -0.02 1.39 16 36 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.15 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.13 2.24 7.82 -2.91 -0.02 2.21 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 41 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 42 H 0.05 1.80 3.07 -2.39 -0.01 1.80 16 43 H 0.05 1.86 6.13 -2.38 -0.01 1.85 16 44 H 0.25 15.74 8.73 -92.71 -0.81 14.93 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 Total: -1.00 -74.47 362.00 2.59 -71.88 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.42 Total: 22.28 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 7.47 Total: 10.45 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -6.92 Total: -135.68 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.07 Total: -19.26 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.69 Total: 50.33 kcal Total: -74.47 2.59 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033462875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.297 kcal (2) G-P(sol) polarization free energy of solvation -74.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds