Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99911 * 2 1 4 4 O 1.21705 * 119.99458 * 186.25619 * 3 2 1 5 5 C 1.46648 * 120.00161 * 6.24912 * 3 2 1 6 6 C 1.37837 * 126.82161 * 187.64266 * 5 3 2 7 7 N 1.32963 * 107.99582 * 179.97438 * 6 5 3 8 8 C 1.31800 * 109.77113 * 0.02562 * 7 6 5 9 9 C 1.47821 * 125.50942 * 180.02562 * 8 7 6 10 10 C 1.39585 * 120.15049 * 179.70069 * 9 8 7 11 11 C 1.37948 * 119.85398 * 179.74683 * 10 9 8 12 12 C 1.38362 * 120.14677 * 0.53256 * 11 10 9 13 13 C 1.38360 * 120.29320 * 359.73720 * 12 11 10 14 14 C 1.37955 * 120.14297 * 359.97438 * 13 12 11 15 15 N 1.35910 * 108.98625 * 359.76409 * 8 7 6 16 16 H 0.96991 * 126.55449 * 180.23034 * 15 8 7 17 17 C 1.46497 * 119.99609 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.88383 * 183.88774 * 17 2 1 19 19 C 1.55152 * 111.00721 * 60.00523 * 17 2 1 20 20 C 1.54331 * 102.94190 * 206.42529 * 19 17 2 21 21 N 1.47017 * 107.27283 * 22.18682 * 20 19 17 22 22 C 1.36933 * 125.64799 * 181.02306 * 21 20 19 23 23 H 1.08003 * 120.00198 * 175.09884 * 22 21 20 24 24 C 1.38811 * 120.00072 * 355.10347 * 22 21 20 25 25 N 1.31620 * 119.99750 * 155.94535 * 24 22 21 26 26 Si 1.86803 * 120.00065 * 335.67430 * 24 22 21 27 27 H 1.48497 * 109.46964 * 185.84190 * 26 24 22 28 28 H 1.48497 * 109.46779 * 305.84479 * 26 24 22 29 29 H 1.48498 * 109.46847 * 65.84074 * 26 24 22 30 30 C 1.47426 * 108.70074 * 1.28994 * 21 20 19 31 31 H 1.08994 * 109.47384 * 275.75593 * 1 2 3 32 32 H 1.08997 * 109.46571 * 35.75358 * 1 2 3 33 33 H 1.09001 * 109.47172 * 155.75051 * 1 2 3 34 34 H 1.08005 * 126.00010 * 359.95682 * 6 5 3 35 35 H 1.07999 * 120.06602 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.92887 * 180.27375 * 11 10 9 37 37 H 1.07997 * 119.85431 * 179.72422 * 12 11 10 38 38 H 1.08000 * 119.92661 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.07273 * 179.97438 * 14 13 12 40 40 H 1.08996 * 110.72091 * 88.05713 * 19 17 2 41 41 H 1.09001 * 110.86823 * 324.85243 * 19 17 2 42 42 H 1.09000 * 109.87433 * 262.77082 * 20 19 17 43 43 H 1.08999 * 110.01124 * 141.68609 * 20 19 17 44 44 H 0.96992 * 120.00311 * 354.72209 * 25 24 22 45 45 H 1.09004 * 110.36431 * 94.48597 * 30 21 20 46 46 H 1.09005 * 110.36521 * 216.80019 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1702 -0.1149 5 6 1.4122 2.4334 0.1382 6 6 1.9333 3.7031 0.0107 7 7 0.9477 4.5734 0.2087 8 6 -0.1743 3.9277 0.4562 9 6 -1.4849 4.5559 0.7261 10 6 -2.6064 3.7613 0.9692 11 6 -3.8254 4.3540 1.2255 12 6 -3.9402 5.7328 1.2311 13 6 -2.8336 6.5262 0.9854 14 6 -1.6075 5.9463 0.7335 15 7 0.0672 2.5908 0.4175 16 1 -0.5798 1.8825 0.5604 17 6 2.1975 -1.2688 0.0006 18 1 3.2717 -1.0973 0.0695 19 6 1.8484 -2.1130 -1.2535 20 6 2.1063 -3.5589 -0.7795 21 7 2.0264 -3.5578 0.6885 22 6 2.2159 -4.6452 1.4989 23 1 2.2138 -4.5258 2.5723 24 6 2.4109 -5.9012 0.9408 25 7 3.0438 -6.8328 1.6218 26 14 1.7682 -6.2714 -0.7737 27 1 1.9769 -7.7092 -1.0808 28 1 0.3184 -5.9569 -0.8374 29 1 2.4986 -5.4422 -1.7658 30 6 1.7020 -2.1935 1.1433 31 1 -0.3634 0.1031 1.0224 32 1 -0.3632 0.8340 -0.6005 33 1 -0.3633 -0.9370 -0.4221 34 1 2.9616 3.9480 -0.2108 35 1 -2.5190 2.6848 0.9610 36 1 -4.6930 3.7404 1.4181 37 1 -4.8977 6.1918 1.4279 38 1 -2.9300 7.6019 0.9908 39 1 -0.7445 6.5667 0.5414 40 1 2.5044 -1.8571 -2.0855 41 1 0.8033 -1.9795 -1.5329 42 1 3.0980 -3.8815 -1.0965 43 1 1.3500 -4.2270 -1.1915 44 1 3.4408 -6.6204 2.4808 45 1 0.6262 -2.0857 1.2822 46 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033462876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = 109.056005 kcal Electronic energy + Delta-G solvation = -28718.906875 eV Core-core repulsion = 24804.442216 eV Total energy + Delta-G solvation = -3914.464659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52311 -39.94094 -39.26419 -37.72069 -35.46642 -33.27617 -32.64951 -32.22305 -31.35039 -29.79428 -29.08077 -28.31154 -27.29394 -24.62027 -23.76634 -23.28394 -22.38952 -21.52349 -20.87696 -20.36713 -19.82006 -18.22265 -17.57263 -17.35004 -16.68853 -16.25961 -16.04203 -15.71947 -15.25790 -14.99417 -14.88686 -14.59058 -14.20986 -13.94392 -13.72453 -13.71464 -13.56329 -13.41977 -13.18766 -12.87227 -12.67314 -12.34685 -12.28899 -11.90019 -11.60147 -11.56269 -11.15477 -11.15088 -10.69275 -10.57797 -10.53843 -10.21437 -10.06864 -9.96628 -9.56918 -9.46153 -9.12732 -8.81481 -8.56456 -8.32407 -7.17266 -6.39126 -3.25379 0.27626 0.90557 1.29527 2.35513 2.55200 2.77689 3.11087 3.38568 3.43793 3.46308 3.67814 3.75647 4.19719 4.33968 4.44435 4.53687 4.59216 4.64949 4.70879 4.79737 4.92359 4.93450 4.97788 5.07998 5.12005 5.17206 5.22374 5.29165 5.36460 5.41687 5.44302 5.57126 5.72012 5.76848 5.89789 5.94598 6.01398 6.08985 6.20765 6.26423 6.28931 6.41521 6.44584 6.56931 6.68271 6.76254 7.15706 7.52772 7.57282 7.93334 8.26990 8.96672 9.49640 10.14278 11.10541 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.002352 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.552119 B =11900.913224 C =12733.927970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.594 3.406 4 O -0.519 6.519 5 C -0.072 4.072 6 C 0.073 3.927 7 N -0.478 5.478 8 C 0.266 3.734 9 C -0.020 4.020 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.109 4.109 13 C -0.118 4.118 14 C -0.074 4.074 15 N -0.551 5.551 16 H 0.426 0.574 17 C 0.126 3.874 18 H 0.116 0.884 19 C -0.140 4.140 20 C 0.120 3.880 21 N -0.607 5.607 22 C -0.331 4.331 23 H 0.080 0.920 24 C -0.016 4.016 25 N -0.916 5.916 26 Si 1.053 2.947 27 H -0.299 1.299 28 H -0.298 1.298 29 H -0.281 1.281 30 C 0.132 3.868 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.189 0.811 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.264 0.736 45 H 0.024 0.976 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 26.134 -3.804 30.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.332 5.332 3 C 0.382 3.618 4 O -0.395 6.395 5 C -0.189 4.189 6 C -0.083 4.083 7 N -0.197 5.197 8 C 0.007 3.993 9 C -0.022 4.022 10 C -0.129 4.129 11 C -0.134 4.134 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.093 4.093 15 N -0.162 5.162 16 H 0.273 0.727 17 C 0.022 3.978 18 H 0.133 0.867 19 C -0.178 4.178 20 C -0.005 4.005 21 N -0.335 5.335 22 C -0.457 4.457 23 H 0.097 0.903 24 C -0.217 4.217 25 N -0.556 5.556 26 Si 0.886 3.114 27 H -0.227 1.227 28 H -0.226 1.226 29 H -0.208 1.208 30 C 0.004 3.996 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.206 0.794 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.185 25.611 -4.943 29.691 hybrid contribution -0.526 -0.123 1.297 1.405 sum -14.711 25.488 -3.647 29.654 Atomic orbital electron populations 1.22101 0.80937 1.04277 1.01299 1.47640 1.06345 1.06144 1.73090 1.16836 0.86564 0.81436 0.76961 1.90871 1.12577 1.86156 1.49878 1.21543 0.83612 0.97158 1.16586 1.22921 0.99323 0.86119 0.99894 1.70267 0.97674 1.32968 1.18755 1.21409 0.94750 0.79814 1.03355 1.17634 0.87857 0.93590 1.03153 1.21085 0.92451 0.99223 1.00150 1.21040 0.97173 0.95156 0.99987 1.21347 0.98976 0.93803 0.98608 1.21183 0.92378 1.00388 0.99700 1.21258 0.98346 0.93065 0.96668 1.44368 1.09632 1.08945 1.53285 0.72744 1.22569 0.97889 0.80652 0.96673 0.86658 1.22962 1.01461 0.95962 0.97449 1.21927 0.99362 0.93509 0.85747 1.44754 1.83450 1.04736 1.00604 1.20087 1.49173 0.86173 0.90302 0.90255 1.25751 0.98754 0.91728 1.05443 1.70900 1.32991 1.36139 1.15602 0.84138 0.76205 0.74601 0.76478 1.22703 1.22638 1.20799 1.21804 0.97178 0.85487 0.95095 0.92164 0.91511 0.88610 0.79402 0.86383 0.85299 0.85567 0.85217 0.84288 0.90706 0.91314 0.93265 0.95351 0.92652 0.95798 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 7.40 59.85 0.44 0.99 16 2 N -0.60 -8.11 2.91 -172.90 -0.50 -8.62 16 3 C 0.59 8.68 7.63 -12.87 -0.10 8.59 16 4 O -0.52 -9.28 16.32 5.18 0.08 -9.20 16 5 C -0.07 -0.89 6.66 -81.72 -0.54 -1.44 16 6 C 0.07 0.90 11.70 -17.21 -0.20 0.70 16 7 N -0.48 -5.84 10.79 -10.76 -0.12 -5.96 16 8 C 0.27 2.82 7.74 -154.88 -1.20 1.62 16 9 C -0.02 -0.18 5.87 -104.97 -0.62 -0.79 16 10 C -0.11 -0.75 9.69 -39.19 -0.38 -1.13 16 11 C -0.12 -0.66 10.03 -39.64 -0.40 -1.06 16 12 C -0.11 -0.59 10.04 -39.49 -0.40 -0.99 16 13 C -0.12 -0.71 10.03 -39.64 -0.40 -1.11 16 14 C -0.07 -0.58 9.69 -39.18 -0.38 -0.96 16 15 N -0.55 -5.38 5.05 -7.13 -0.04 -5.42 16 16 H 0.43 3.10 4.20 -40.82 -0.17 2.93 16 17 C 0.13 2.09 3.44 -65.67 -0.23 1.86 16 18 H 0.12 2.15 7.05 -51.93 -0.37 1.78 16 19 C -0.14 -2.27 6.49 -24.90 -0.16 -2.43 16 20 C 0.12 2.54 4.58 -3.06 -0.01 2.52 16 21 N -0.61 -14.55 3.34 -169.93 -0.57 -15.12 16 22 C -0.33 -9.35 10.48 -15.06 -0.16 -9.51 16 23 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 24 C -0.02 -0.47 5.47 -17.43 -0.10 -0.57 16 25 N -0.92 -28.52 13.70 55.49 0.76 -27.76 16 26 Si 1.05 25.99 24.76 -169.99 -4.21 21.78 16 27 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.30 -7.08 7.10 56.52 0.40 -6.67 16 29 H -0.28 -6.30 5.21 56.52 0.29 -6.01 16 30 C 0.13 2.55 6.79 -2.41 -0.02 2.53 16 31 H 0.06 0.48 7.49 -51.93 -0.39 0.09 16 32 H 0.07 0.50 5.67 -51.93 -0.29 0.21 16 33 H 0.10 0.91 6.36 -51.93 -0.33 0.58 16 34 H 0.19 2.06 8.06 -52.48 -0.42 1.63 16 35 H 0.12 0.58 7.14 -52.49 -0.37 0.21 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 1.10 7.82 -52.48 -0.41 0.69 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.97 6.48 -51.93 -0.34 0.63 16 42 H 0.05 1.11 6.90 -51.93 -0.36 0.75 16 43 H 0.03 0.63 4.24 -51.93 -0.22 0.41 16 44 H 0.26 8.12 8.73 -40.82 -0.36 7.77 16 45 H 0.02 0.43 6.95 -51.93 -0.36 0.07 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -34.99 365.63 -9.75 -44.74 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.83 Total: 1.22 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.84 Total: -1.17 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.46 Total: -62.88 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.21 Total: 21.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.99 -9.75 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033462876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.796 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds