Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99911 * 2 1 4 4 O 1.21705 * 119.99458 * 186.25619 * 3 2 1 5 5 C 1.46648 * 120.00161 * 6.24912 * 3 2 1 6 6 C 1.37837 * 126.82161 * 187.64266 * 5 3 2 7 7 N 1.32963 * 107.99582 * 179.97438 * 6 5 3 8 8 C 1.31800 * 109.77113 * 0.02562 * 7 6 5 9 9 C 1.47821 * 125.50942 * 180.02562 * 8 7 6 10 10 C 1.39585 * 120.15049 * 179.70069 * 9 8 7 11 11 C 1.37948 * 119.85398 * 179.74683 * 10 9 8 12 12 C 1.38362 * 120.14677 * 0.53256 * 11 10 9 13 13 C 1.38360 * 120.29320 * 359.73720 * 12 11 10 14 14 C 1.37955 * 120.14297 * 359.97438 * 13 12 11 15 15 N 1.35910 * 108.98625 * 359.76409 * 8 7 6 16 16 H 0.96991 * 126.55449 * 180.23034 * 15 8 7 17 17 C 1.46497 * 119.99609 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.88383 * 183.88774 * 17 2 1 19 19 C 1.55152 * 111.00721 * 60.00523 * 17 2 1 20 20 C 1.54331 * 102.94190 * 206.42529 * 19 17 2 21 21 N 1.47017 * 107.27283 * 22.18682 * 20 19 17 22 22 C 1.36933 * 125.64799 * 181.02306 * 21 20 19 23 23 H 1.08003 * 120.00198 * 175.09884 * 22 21 20 24 24 C 1.38811 * 120.00072 * 355.10347 * 22 21 20 25 25 N 1.31620 * 119.99750 * 155.94535 * 24 22 21 26 26 Si 1.86803 * 120.00065 * 335.67430 * 24 22 21 27 27 H 1.48497 * 109.46964 * 185.84190 * 26 24 22 28 28 H 1.48497 * 109.46779 * 305.84479 * 26 24 22 29 29 H 1.48498 * 109.46847 * 65.84074 * 26 24 22 30 30 C 1.47426 * 108.70074 * 1.28994 * 21 20 19 31 31 H 1.08994 * 109.47384 * 275.75593 * 1 2 3 32 32 H 1.08997 * 109.46571 * 35.75358 * 1 2 3 33 33 H 1.09001 * 109.47172 * 155.75051 * 1 2 3 34 34 H 1.08005 * 126.00010 * 359.95682 * 6 5 3 35 35 H 1.07999 * 120.06602 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.92887 * 180.27375 * 11 10 9 37 37 H 1.07997 * 119.85431 * 179.72422 * 12 11 10 38 38 H 1.08000 * 119.92661 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.07273 * 179.97438 * 14 13 12 40 40 H 1.08996 * 110.72091 * 88.05713 * 19 17 2 41 41 H 1.09001 * 110.86823 * 324.85243 * 19 17 2 42 42 H 1.09000 * 109.87433 * 262.77082 * 20 19 17 43 43 H 1.08999 * 110.01124 * 141.68609 * 20 19 17 44 44 H 0.96992 * 120.00311 * 354.72209 * 25 24 22 45 45 H 1.09004 * 110.36431 * 94.48597 * 30 21 20 46 46 H 1.09005 * 110.36521 * 216.80019 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1702 -0.1149 5 6 1.4122 2.4334 0.1382 6 6 1.9333 3.7031 0.0107 7 7 0.9477 4.5734 0.2087 8 6 -0.1743 3.9277 0.4562 9 6 -1.4849 4.5559 0.7261 10 6 -2.6064 3.7613 0.9692 11 6 -3.8254 4.3540 1.2255 12 6 -3.9402 5.7328 1.2311 13 6 -2.8336 6.5262 0.9854 14 6 -1.6075 5.9463 0.7335 15 7 0.0672 2.5908 0.4175 16 1 -0.5798 1.8825 0.5604 17 6 2.1975 -1.2688 0.0006 18 1 3.2717 -1.0973 0.0695 19 6 1.8484 -2.1130 -1.2535 20 6 2.1063 -3.5589 -0.7795 21 7 2.0264 -3.5578 0.6885 22 6 2.2159 -4.6452 1.4989 23 1 2.2138 -4.5258 2.5723 24 6 2.4109 -5.9012 0.9408 25 7 3.0438 -6.8328 1.6218 26 14 1.7682 -6.2714 -0.7737 27 1 1.9769 -7.7092 -1.0808 28 1 0.3184 -5.9569 -0.8374 29 1 2.4986 -5.4422 -1.7658 30 6 1.7020 -2.1935 1.1433 31 1 -0.3634 0.1031 1.0224 32 1 -0.3632 0.8340 -0.6005 33 1 -0.3633 -0.9370 -0.4221 34 1 2.9616 3.9480 -0.2108 35 1 -2.5190 2.6848 0.9610 36 1 -4.6930 3.7404 1.4181 37 1 -4.8977 6.1918 1.4279 38 1 -2.9300 7.6019 0.9908 39 1 -0.7445 6.5667 0.5414 40 1 2.5044 -1.8571 -2.0855 41 1 0.8033 -1.9795 -1.5329 42 1 3.0980 -3.8815 -1.0965 43 1 1.3500 -4.2270 -1.1915 44 1 3.4408 -6.6204 2.4808 45 1 0.6262 -2.0857 1.2822 46 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033462876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = 86.273644 kcal Electronic energy + Delta-G solvation = -28719.894792 eV Core-core repulsion = 24804.442216 eV Total energy + Delta-G solvation = -3915.452576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.38375 -41.08824 -39.80736 -39.17927 -36.73906 -34.69435 -33.85226 -33.17094 -31.84476 -31.40327 -30.20668 -29.51337 -28.28430 -26.12533 -24.83512 -23.98784 -23.25074 -22.63175 -22.30515 -21.41127 -20.90342 -19.61587 -19.11838 -18.30175 -17.70860 -17.17848 -16.99991 -16.76571 -16.35868 -16.02285 -15.85165 -15.62422 -15.51731 -15.12019 -14.93154 -14.48680 -14.42918 -14.35086 -14.30044 -14.07177 -14.01803 -13.70195 -13.30912 -13.20367 -13.07876 -12.54616 -12.33867 -12.29115 -12.05534 -11.79599 -11.62472 -11.55591 -11.38594 -11.22675 -11.00389 -10.66537 -10.62416 -9.93879 -9.91708 -9.19652 -9.08981 -8.69491 -5.46930 -0.40240 0.44517 0.49516 1.42257 1.43020 1.51578 1.70569 1.73883 1.81783 2.10986 2.56553 2.91563 3.01234 3.03251 3.29097 3.34838 3.61781 3.68720 3.79340 3.84186 3.96192 4.00296 4.08826 4.17051 4.24264 4.25628 4.29141 4.31176 4.42374 4.52821 4.55183 4.65668 4.66577 4.77602 4.84238 4.90049 4.95215 5.10116 5.11729 5.24918 5.31565 5.47640 5.49185 5.51937 5.58254 5.96461 6.03276 6.05154 6.10177 6.67210 6.76941 6.83082 7.40449 8.03757 8.81919 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.002352 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.552119 B =11900.913224 C =12733.927970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.596 5.596 3 C 0.596 3.404 4 O -0.562 6.562 5 C -0.085 4.085 6 C 0.068 3.932 7 N -0.503 5.503 8 C 0.280 3.720 9 C -0.048 4.048 10 C -0.110 4.110 11 C -0.120 4.120 12 C -0.104 4.104 13 C -0.123 4.123 14 C -0.087 4.087 15 N -0.538 5.538 16 H 0.438 0.562 17 C 0.140 3.860 18 H 0.090 0.910 19 C -0.124 4.124 20 C 0.110 3.890 21 N -0.629 5.629 22 C -0.321 4.321 23 H 0.046 0.954 24 C -0.076 4.076 25 N -0.954 5.954 26 Si 1.095 2.905 27 H -0.313 1.313 28 H -0.277 1.277 29 H -0.245 1.245 30 C 0.132 3.868 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.248 0.752 45 H 0.051 0.949 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 28.213 -5.492 34.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.327 5.327 3 C 0.385 3.615 4 O -0.440 6.440 5 C -0.202 4.202 6 C -0.089 4.089 7 N -0.222 5.222 8 C 0.020 3.980 9 C -0.050 4.050 10 C -0.130 4.130 11 C -0.138 4.138 12 C -0.123 4.123 13 C -0.141 4.141 14 C -0.107 4.107 15 N -0.151 5.151 16 H 0.287 0.713 17 C 0.035 3.965 18 H 0.108 0.892 19 C -0.162 4.162 20 C -0.015 4.015 21 N -0.357 5.357 22 C -0.449 4.449 23 H 0.064 0.936 24 C -0.269 4.269 25 N -0.597 5.597 26 Si 0.921 3.079 27 H -0.242 1.242 28 H -0.204 1.204 29 H -0.170 1.170 30 C 0.005 3.995 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.209 0.791 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.976 27.741 -6.632 33.715 hybrid contribution 0.522 -0.582 1.977 2.126 sum -17.454 27.159 -4.655 32.618 Atomic orbital electron populations 1.22445 0.78067 1.05817 1.03245 1.47571 1.07976 1.04546 1.72603 1.17049 0.86144 0.82159 0.76144 1.90847 1.14478 1.86796 1.51916 1.21095 0.84650 0.95914 1.18503 1.23117 0.99787 0.86427 0.99521 1.70287 0.98309 1.33444 1.20166 1.21823 0.95061 0.79948 1.01184 1.17769 0.87568 0.94125 1.05554 1.21353 0.92165 1.00158 0.99324 1.21404 0.97514 0.95679 0.99156 1.21742 0.99763 0.93911 0.96847 1.21446 0.91832 1.01628 0.99165 1.21341 0.99029 0.92979 0.97326 1.44215 1.08820 1.09090 1.52927 0.71315 1.22081 0.96909 0.81691 0.95818 0.89210 1.22909 1.03991 0.92093 0.97222 1.22065 0.98502 0.96992 0.83918 1.44759 1.83811 1.05179 1.01932 1.19956 1.47452 0.87914 0.89566 0.93595 1.27106 0.98887 0.91948 1.09008 1.71014 1.35712 1.37269 1.15706 0.83661 0.77054 0.74136 0.73040 1.24164 1.20383 1.17006 1.21919 0.98343 0.83888 0.95325 0.90215 0.89222 0.87684 0.79092 0.84544 0.82907 0.83022 0.83308 0.85233 0.88975 0.87979 0.95033 0.94787 0.94313 0.93124 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 7.40 127.77 0.94 1.63 16 2 N -0.60 -14.77 2.91 -819.15 -2.38 -17.16 16 3 C 0.60 16.85 7.63 86.44 0.66 17.51 16 4 O -0.56 -20.29 16.32 -4.36 -0.07 -20.37 16 5 C -0.08 -2.00 6.66 40.23 0.27 -1.73 16 6 C 0.07 1.65 11.70 84.43 0.99 2.64 16 7 N -0.50 -12.05 10.79 -187.95 -2.03 -14.08 16 8 C 0.28 5.51 7.74 136.59 1.06 6.57 16 9 C -0.05 -0.75 5.87 -20.09 -0.12 -0.86 16 10 C -0.11 -1.16 9.69 22.53 0.22 -0.94 16 11 C -0.12 -0.92 10.03 22.23 0.22 -0.70 16 12 C -0.10 -0.76 10.04 22.33 0.22 -0.53 16 13 C -0.12 -1.17 10.03 22.23 0.22 -0.95 16 14 C -0.09 -1.25 9.69 22.53 0.22 -1.04 16 15 N -0.54 -9.30 5.05 -176.47 -0.89 -10.19 16 16 H 0.44 4.89 4.20 -92.71 -0.39 4.50 16 17 C 0.14 4.43 3.44 46.46 0.16 4.59 16 18 H 0.09 3.35 7.05 -2.39 -0.02 3.34 16 19 C -0.12 -3.61 6.49 31.78 0.21 -3.40 16 20 C 0.11 4.40 4.58 86.73 0.40 4.80 16 21 N -0.63 -29.78 3.34 -691.54 -2.31 -32.09 16 22 C -0.32 -18.55 10.48 84.03 0.88 -17.67 16 23 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 24 C -0.08 -4.50 5.47 84.86 0.46 -4.04 16 25 N -0.95 -61.56 13.70 21.65 0.30 -61.26 16 26 Si 1.09 51.88 24.76 68.60 1.70 53.58 16 27 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 28 H -0.28 -12.09 7.10 99.48 0.71 -11.39 16 29 H -0.25 -10.17 5.21 99.48 0.52 -9.65 16 30 C 0.13 4.95 6.79 86.93 0.59 5.54 16 31 H 0.08 0.92 7.49 -2.39 -0.02 0.90 16 32 H 0.09 0.96 5.67 -2.39 -0.01 0.95 16 33 H 0.10 1.45 6.36 -2.39 -0.02 1.44 16 34 H 0.19 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.14 0.81 7.14 -2.91 -0.02 0.79 16 36 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.15 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.13 2.02 7.82 -2.91 -0.02 2.00 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.10 2.34 6.48 -2.39 -0.02 2.32 16 42 H 0.03 1.38 6.90 -2.39 -0.02 1.36 16 43 H 0.03 1.37 4.24 -2.39 -0.01 1.36 16 44 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 45 H 0.05 1.68 6.95 -2.38 -0.02 1.66 16 46 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -80.13 365.63 2.33 -77.81 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.41 Total: 12.32 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.60 Total: 11.43 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -7.31 Total: -134.77 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.70 Total: 53.58 kcal Total: -80.13 2.33 -77.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033462876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.079 kcal (2) G-P(sol) polarization free energy of solvation -80.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds