Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99779 * 2 1 4 4 O 1.21582 * 120.00148 * 175.84259 * 3 2 1 5 5 C 1.47632 * 119.99995 * 355.84644 * 3 2 1 6 6 C 1.39760 * 120.02430 * 221.55538 * 5 3 2 7 7 C 1.37613 * 119.96895 * 179.72023 * 6 5 3 8 8 C 1.39517 * 120.02832 * 0.54966 * 7 6 5 9 9 C 1.48268 * 119.97483 * 179.70251 * 8 7 6 10 10 C 1.40951 * 126.24922 * 180.02562 * 9 8 7 11 11 N 1.30635 * 108.06832 * 179.97438 * 10 9 8 12 12 N 1.39994 * 108.56584 * 359.97438 * 11 10 9 13 13 H 0.97006 * 125.87388 * 179.97438 * 12 11 10 14 14 C 1.34716 * 108.26039 * 359.73328 * 12 11 10 15 15 C 1.39531 * 120.05944 * 359.72368 * 8 7 6 16 16 C 1.37617 * 120.02077 * 0.02562 * 15 8 7 17 17 C 1.46500 * 120.00158 * 179.97438 * 2 1 3 18 18 H 1.08991 * 110.63970 * 181.69078 * 17 2 1 19 19 C 1.55161 * 110.87184 * 304.93996 * 17 2 1 20 20 C 1.55132 * 101.48327 * 82.76555 * 19 17 2 21 21 N 1.47419 * 104.72307 * 37.29729 * 20 19 17 22 22 C 1.36940 * 125.64608 * 155.81519 * 21 20 19 23 23 H 1.08001 * 119.99591 * 179.97438 * 22 21 20 24 24 C 1.38806 * 120.00281 * 359.69457 * 22 21 20 25 25 N 1.31625 * 119.99720 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00293 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47123 * 59.99302 * 26 24 22 28 28 H 1.48503 * 109.47243 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47179 * 299.99550 * 26 24 22 30 30 C 1.47016 * 108.70302 * 335.54936 * 21 20 19 31 31 H 1.09001 * 109.47621 * 270.84194 * 1 2 3 32 32 H 1.09004 * 109.47206 * 30.84392 * 1 2 3 33 33 H 1.09006 * 109.46985 * 150.84033 * 1 2 3 34 34 H 1.08000 * 120.01260 * 359.96920 * 6 5 3 35 35 H 1.08001 * 119.98281 * 180.27406 * 7 6 5 36 36 H 1.07994 * 125.96526 * 359.96814 * 10 9 8 37 37 H 1.07999 * 126.19925 * 180.28214 * 14 12 11 38 38 H 1.07992 * 119.98908 * 179.97438 * 15 8 7 39 39 H 1.07998 * 120.01089 * 179.97438 * 16 15 8 40 40 H 1.09000 * 111.00234 * 201.00430 * 19 17 2 41 41 H 1.08995 * 111.00369 * 324.85747 * 19 17 2 42 42 H 1.09000 * 110.49599 * 278.44953 * 20 19 17 43 43 H 1.09004 * 110.33435 * 156.05831 * 20 19 17 44 44 H 0.97002 * 120.00038 * 180.02562 * 25 24 22 45 45 H 1.09003 * 109.88592 * 120.70999 * 30 21 20 46 46 H 1.09007 * 109.88272 * 241.87040 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3523 1.1687 0.0763 5 6 1.4035 2.4440 -0.0926 6 6 1.8887 3.4732 -0.9043 7 6 1.1994 4.6608 -0.9942 8 6 0.0227 4.8419 -0.2667 9 6 -0.7155 6.1243 -0.3594 10 6 -1.9105 6.4487 0.3141 11 7 -2.2485 7.6646 -0.0233 12 7 -1.2921 8.1615 -0.9168 13 1 -1.2989 9.0412 -1.3255 14 6 -0.3579 7.2098 -1.1073 15 6 -0.4597 3.8173 0.5484 16 6 0.2251 2.6269 0.6360 17 6 2.1975 -1.2687 0.0006 18 1 3.2725 -1.0916 0.0306 19 6 1.7549 -2.1621 1.1894 20 6 0.4728 -2.8231 0.6185 21 7 0.7776 -3.0653 -0.8034 22 6 0.1852 -4.0114 -1.5966 23 1 0.4795 -4.1099 -2.6311 24 6 -0.7892 -4.8478 -1.0696 25 7 -1.1435 -4.7317 0.1927 26 14 -1.5967 -6.1388 -2.1514 27 1 -0.5620 -7.0722 -2.6646 28 1 -2.5958 -6.8967 -1.3560 29 1 -2.2740 -5.4742 -3.2937 30 6 1.8183 -2.1187 -1.2304 31 1 -0.3634 0.0151 1.0275 32 1 -0.3634 0.8823 -0.5269 33 1 -0.3633 -0.8975 -0.5008 34 1 2.8021 3.3349 -1.4637 35 1 1.5717 5.4546 -1.6248 36 1 -2.4521 5.8045 0.9907 37 1 0.5143 7.2896 -1.7393 38 1 -1.3704 3.9589 1.1113 39 1 -0.1482 1.8342 1.2673 40 1 2.5141 -2.9093 1.4205 41 1 1.5234 -1.5583 2.0669 42 1 -0.3789 -2.1498 0.7146 43 1 0.2726 -3.7649 1.1293 44 1 -1.8242 -5.3164 0.5611 45 1 2.6918 -2.6642 -1.5875 46 1 1.4321 -1.4749 -2.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033492624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 112.978965 kcal Electronic energy + Delta-G solvation = -28753.980804 eV Core-core repulsion = 24839.686257 eV Total energy + Delta-G solvation = -3914.294547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61428 -40.30648 -38.55495 -37.23406 -34.50262 -33.00250 -32.14902 -31.68384 -31.00577 -29.43362 -28.74875 -27.87804 -26.22442 -24.64385 -23.68306 -23.35792 -21.61996 -21.07707 -20.37628 -20.11094 -18.90635 -18.48740 -17.25552 -16.90807 -16.32336 -15.70354 -15.39253 -15.08511 -15.00070 -14.71679 -14.55441 -14.39901 -13.77772 -13.75537 -13.58804 -13.29381 -12.95622 -12.81018 -12.67883 -12.24951 -12.09184 -11.89187 -11.74511 -11.56939 -11.15296 -11.07531 -11.00376 -10.88806 -10.80741 -10.30365 -10.18303 -10.15421 -9.97074 -9.86046 -9.55271 -9.43708 -9.06422 -8.66527 -8.27338 -8.06701 -6.86442 -5.67653 -3.09876 0.62270 1.30286 1.54477 2.38357 2.42771 3.01401 3.29902 3.39366 3.43985 3.44806 3.84211 4.23022 4.38291 4.47350 4.59549 4.73782 4.79957 4.93329 5.05732 5.17886 5.23681 5.42223 5.45019 5.46159 5.54936 5.60780 5.67900 5.73827 5.82796 5.90396 5.93403 6.02751 6.24351 6.27992 6.31514 6.32251 6.38064 6.39922 6.57236 6.60587 6.72131 6.75966 6.76569 7.05259 7.18691 7.45202 7.60128 7.71911 7.83326 8.33418 8.39571 9.19472 9.79884 10.44324 11.35549 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002378 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.267780 B =11773.510593 C =12728.130250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.586 5.586 3 C 0.555 3.445 4 O -0.548 6.548 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.131 4.131 8 C 0.021 3.979 9 C -0.202 4.202 10 C 0.071 3.929 11 N -0.295 5.295 12 N -0.473 5.473 13 H 0.442 0.558 14 C 0.077 3.923 15 C -0.125 4.125 16 C -0.080 4.080 17 C 0.125 3.875 18 H 0.100 0.900 19 C -0.154 4.154 20 C 0.144 3.856 21 N -0.603 5.603 22 C -0.222 4.222 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.127 3.873 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.189 0.811 37 H 0.181 0.819 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.106 0.894 44 H 0.252 0.748 45 H 0.033 0.967 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 23.629 -0.056 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.316 5.316 3 C 0.344 3.656 4 O -0.427 6.427 5 C -0.133 4.133 6 C -0.078 4.078 7 C -0.149 4.149 8 C 0.019 3.981 9 C -0.213 4.213 10 C -0.117 4.117 11 N -0.116 5.116 12 N -0.180 5.180 13 H 0.286 0.714 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.098 4.098 17 C 0.022 3.978 18 H 0.118 0.882 19 C -0.194 4.194 20 C 0.020 3.980 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.571 5.571 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.213 1.213 30 C 0.000 4.000 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.205 0.795 37 H 0.198 0.802 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.124 0.876 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.619 24.365 0.150 24.373 hybrid contribution 0.078 -0.863 -0.923 1.266 sum 0.697 23.502 -0.774 23.525 Atomic orbital electron populations 1.22381 0.79178 1.04695 1.01609 1.47718 1.07400 1.05354 1.71177 1.18357 0.87031 0.83656 0.76604 1.90748 1.13635 1.87382 1.50955 1.19937 0.96857 0.95019 1.01500 1.21039 0.98711 0.91618 0.96446 1.20940 0.95359 0.97651 1.00977 1.18169 0.93347 0.91141 0.95441 1.18986 0.99722 0.95640 1.06961 1.24074 0.95278 0.93259 0.99074 1.77252 1.12782 1.12522 1.09053 1.46227 1.18941 1.15556 1.37253 0.71441 1.22689 0.95246 0.89239 1.00021 1.20989 1.00656 0.92737 0.99992 1.21511 0.93021 0.97538 0.97728 1.22164 0.96462 0.82012 0.97209 0.88210 1.23386 1.01569 0.98234 0.96191 1.22190 0.90466 1.00707 0.84686 1.44537 1.42900 1.37424 1.08071 1.19022 1.14969 1.08235 0.92828 0.90587 1.24766 0.99441 0.99835 0.96493 1.69780 1.34256 1.41056 1.11981 0.86157 0.78878 0.81305 0.79170 1.21202 1.21600 1.21252 1.21644 0.92841 0.91386 0.94119 0.92639 0.91427 0.87930 0.85195 0.85816 0.79465 0.80154 0.85410 0.84585 0.90964 0.92058 0.96032 0.87585 0.93678 0.94890 0.95532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 7.04 59.85 0.42 1.41 16 2 N -0.59 -9.91 2.83 -173.02 -0.49 -10.39 16 3 C 0.55 9.31 7.31 -12.43 -0.09 9.22 16 4 O -0.55 -10.75 16.32 5.29 0.09 -10.66 16 5 C -0.13 -1.77 5.14 -104.93 -0.54 -2.31 16 6 C -0.06 -0.70 9.63 -39.24 -0.38 -1.08 16 7 C -0.13 -1.24 9.54 -39.33 -0.38 -1.62 16 8 C 0.02 0.20 5.88 -104.81 -0.62 -0.42 16 9 C -0.20 -1.71 6.04 -105.34 -0.64 -2.35 16 10 C 0.07 0.60 11.42 -17.03 -0.19 0.41 16 11 N -0.29 -2.73 12.66 30.82 0.39 -2.34 16 12 N -0.47 -3.01 7.32 30.64 0.22 -2.78 16 13 H 0.44 1.33 8.96 -182.67 -1.64 -0.31 16 14 C 0.08 0.48 11.38 -16.88 -0.19 0.29 16 15 C -0.13 -1.22 9.56 -39.33 -0.38 -1.60 16 16 C -0.08 -0.91 7.52 -39.24 -0.30 -1.21 16 17 C 0.12 2.33 3.57 -66.09 -0.24 2.09 16 18 H 0.10 1.87 6.99 -51.93 -0.36 1.51 16 19 C -0.15 -2.93 6.55 -24.46 -0.16 -3.09 16 20 C 0.14 3.30 5.03 -2.41 -0.01 3.29 16 21 N -0.60 -14.80 2.98 -169.94 -0.51 -15.30 16 22 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 25 N -0.92 -25.90 10.08 55.49 0.56 -25.34 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 C 0.13 2.66 6.25 -3.07 -0.02 2.64 16 31 H 0.06 0.78 7.00 -51.93 -0.36 0.41 16 32 H 0.07 0.91 5.69 -51.93 -0.30 0.62 16 33 H 0.10 1.95 5.14 -51.93 -0.27 1.68 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 0.81 7.00 -52.49 -0.37 0.44 16 36 H 0.19 1.15 7.33 -52.49 -0.39 0.77 16 37 H 0.18 0.53 7.27 -52.49 -0.38 0.15 16 38 H 0.13 0.94 7.03 -52.49 -0.37 0.58 16 39 H 0.14 1.47 5.69 -52.49 -0.30 1.18 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.50 5.53 -51.93 -0.29 0.22 16 43 H 0.11 2.79 5.86 -51.93 -0.30 2.49 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.57 8.04 -51.92 -0.42 0.15 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -33.51 366.85 -10.15 -43.67 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.97 Total: 1.89 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -3.95 Total: -0.85 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.18 Total: -56.16 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.51 -10.15 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033492624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.646 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds