Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99693 * 2 1 4 4 O 1.21586 * 119.99595 * 184.64589 * 3 2 1 5 5 C 1.47626 * 120.00067 * 4.65174 * 3 2 1 6 6 C 1.39756 * 120.02715 * 319.72740 * 5 3 2 7 7 C 1.37616 * 119.97103 * 179.97438 * 6 5 3 8 8 C 1.39529 * 120.02669 * 359.97438 * 7 6 5 9 9 C 1.48266 * 119.96801 * 179.97438 * 8 7 6 10 10 C 1.40945 * 126.24986 * 359.69537 * 9 8 7 11 11 N 1.30634 * 108.07039 * 179.87792 * 10 9 8 12 12 N 1.39996 * 108.56500 * 0.37585 * 11 10 9 13 13 H 0.96997 * 125.87304 * 179.79767 * 12 11 10 14 14 C 1.34712 * 108.25739 * 359.75532 * 12 11 10 15 15 C 1.39521 * 120.05541 * 0.27277 * 8 7 6 16 16 C 1.37618 * 120.02843 * 359.48871 * 15 8 7 17 17 C 1.46496 * 120.00255 * 180.02562 * 2 1 3 18 18 H 1.09000 * 110.88664 * 180.70276 * 17 2 1 19 19 C 1.55160 * 111.00357 * 56.81694 * 17 2 1 20 20 C 1.54324 * 102.94493 * 277.42776 * 19 17 2 21 21 N 1.47027 * 107.27161 * 337.81101 * 20 19 17 22 22 C 1.36936 * 125.65046 * 178.97956 * 21 20 19 23 23 H 1.07999 * 119.99845 * 179.97438 * 22 21 20 24 24 C 1.38811 * 119.99530 * 359.96892 * 22 21 20 25 25 N 1.31612 * 120.00655 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99689 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47412 * 59.99708 * 26 24 22 28 28 H 1.48503 * 109.47154 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46928 * 300.00054 * 26 24 22 30 30 C 1.47526 * 108.71557 * 358.93534 * 21 20 19 31 31 H 1.08995 * 109.46750 * 88.54943 * 1 2 3 32 32 H 1.09003 * 109.46733 * 208.54619 * 1 2 3 33 33 H 1.09002 * 109.47255 * 328.54707 * 1 2 3 34 34 H 1.07999 * 120.01316 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.98579 * 180.02562 * 7 6 5 36 36 H 1.07996 * 125.96483 * 0.02640 * 10 9 8 37 37 H 1.08001 * 126.19811 * 180.02562 * 14 12 11 38 38 H 1.07998 * 119.98654 * 179.72582 * 15 8 7 39 39 H 1.07996 * 120.01059 * 180.28267 * 16 15 8 40 40 H 1.08998 * 110.71993 * 35.79884 * 19 17 2 41 41 H 1.09003 * 110.71981 * 159.06696 * 19 17 2 42 42 H 1.08998 * 109.88004 * 97.22274 * 20 19 17 43 43 H 1.08992 * 109.88333 * 218.23526 * 20 19 17 44 44 H 0.96993 * 120.00511 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.37870 * 265.31446 * 30 21 20 46 46 H 1.09003 * 110.41379 * 142.94995 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1690 -0.0853 5 6 1.4043 2.4436 0.1037 6 6 0.2033 2.6176 -0.5894 7 6 -0.4808 3.8076 -0.4915 8 6 0.0241 4.8401 0.2997 9 6 -0.7137 6.1220 0.4038 10 6 -1.9262 6.4404 -0.2404 11 7 -2.2591 7.6567 0.1008 12 7 -1.2777 8.1626 0.9615 13 1 -1.2741 9.0455 1.3630 14 6 -0.3395 7.2119 1.1370 15 6 1.2256 4.6695 0.9880 16 6 1.9091 3.4786 0.8956 17 6 2.1976 -1.2687 -0.0006 18 1 3.2738 -1.0960 0.0120 19 6 1.7891 -2.1462 -1.2133 20 6 0.4934 -2.8280 -0.7257 21 7 0.5122 -2.8008 0.7442 22 6 -0.4695 -3.2898 1.5641 23 1 -0.3607 -3.2221 2.6365 24 6 -1.6045 -3.8722 1.0169 25 7 -1.7369 -3.9550 -0.2900 26 14 -2.9441 -4.5385 2.1354 27 1 -3.4766 -3.4390 2.9795 28 1 -4.0410 -5.1057 1.3105 29 1 -2.3793 -5.6013 3.0053 30 6 1.7644 -2.1606 1.1898 31 1 -0.3632 0.0260 -1.0273 32 1 -0.3633 -0.9028 0.4911 33 1 -0.3634 0.8767 0.5362 34 1 -0.1883 1.8181 -1.2008 35 1 -1.4092 3.9422 -1.0266 36 1 -2.4840 5.7913 -0.8990 37 1 0.5476 7.2961 1.7472 38 1 1.6176 5.4710 1.5965 39 1 2.8368 3.3452 1.4321 40 1 1.5933 -1.5270 -2.0887 41 1 2.5579 -2.8883 -1.4286 42 1 -0.3745 -2.2820 -1.0954 43 1 0.4611 -3.8585 -1.0794 44 1 -2.5301 -4.3616 -0.6723 45 1 2.5242 -2.9147 1.3949 46 1 1.5853 -1.5506 2.0752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033492625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 112.477286 kcal Electronic energy + Delta-G solvation = -29018.279308 eV Core-core repulsion = 25103.963006 eV Total energy + Delta-G solvation = -3914.316301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56742 -40.22903 -38.50562 -37.22611 -34.35125 -32.95521 -32.16067 -31.66176 -30.93762 -29.45075 -28.76358 -27.75063 -26.07953 -24.62197 -23.64956 -23.30350 -21.56620 -21.06268 -20.30291 -20.08103 -18.89676 -18.43713 -17.18790 -16.85400 -16.23312 -15.61829 -15.28976 -15.04111 -14.95335 -14.69329 -14.52934 -14.27754 -13.79210 -13.72698 -13.50408 -13.27363 -12.94454 -12.87195 -12.56348 -12.09169 -11.97818 -11.95177 -11.67725 -11.51994 -11.08072 -10.96425 -10.94936 -10.86707 -10.73392 -10.24855 -10.18243 -10.13203 -9.95139 -9.88269 -9.67644 -9.37554 -8.98185 -8.70537 -8.19744 -8.00483 -6.84482 -5.76631 -3.11021 0.68532 1.37561 1.59051 2.43788 2.47020 3.09382 3.37404 3.40444 3.43089 3.43426 3.92124 4.28309 4.42902 4.45686 4.67477 4.81637 4.86871 5.00018 5.11013 5.23321 5.30894 5.38175 5.43757 5.49118 5.62598 5.69410 5.76811 5.80142 5.90279 5.94898 6.07128 6.09919 6.22876 6.33432 6.36434 6.40785 6.44818 6.53049 6.54764 6.64136 6.80686 6.81617 6.83246 7.12079 7.23147 7.51884 7.57064 7.77710 7.84833 8.19021 8.48141 9.16492 9.75759 10.41326 11.34162 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002774 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.426753 B =10090.817981 C =11547.762235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.580 5.580 3 C 0.553 3.447 4 O -0.553 6.553 5 C -0.129 4.129 6 C -0.079 4.079 7 C -0.126 4.126 8 C 0.020 3.980 9 C -0.200 4.200 10 C 0.071 3.929 11 N -0.295 5.295 12 N -0.474 5.474 13 H 0.441 0.559 14 C 0.076 3.924 15 C -0.132 4.132 16 C -0.060 4.060 17 C 0.123 3.877 18 H 0.100 0.900 19 C -0.155 4.155 20 C 0.174 3.826 21 N -0.602 5.602 22 C -0.232 4.232 23 H 0.077 0.923 24 C -0.004 4.004 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.125 3.875 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.189 0.811 37 H 0.181 0.819 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 21.125 0.579 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.310 5.310 3 C 0.342 3.658 4 O -0.433 6.433 5 C -0.132 4.132 6 C -0.097 4.097 7 C -0.144 4.144 8 C 0.018 3.982 9 C -0.212 4.212 10 C -0.117 4.117 11 N -0.117 5.117 12 N -0.180 5.180 13 H 0.285 0.715 14 C -0.073 4.073 15 C -0.150 4.150 16 C -0.078 4.078 17 C 0.019 3.981 18 H 0.118 0.882 19 C -0.195 4.195 20 C 0.049 3.951 21 N -0.329 5.329 22 C -0.360 4.360 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.002 4.002 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.205 0.795 37 H 0.198 0.802 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.651 21.909 0.367 22.071 hybrid contribution -0.215 -0.677 0.839 1.099 sum 2.436 21.231 1.205 21.405 Atomic orbital electron populations 1.22590 0.78537 1.06259 1.01539 1.47617 1.07738 1.04952 1.70676 1.18375 0.86986 0.83747 0.76733 1.90734 1.13728 1.87453 1.51360 1.19935 0.96598 0.95003 1.01704 1.21598 0.92911 0.97536 0.97677 1.20995 1.00617 0.92694 1.00112 1.18164 0.93235 0.91131 0.95639 1.18991 0.99240 0.95592 1.07364 1.24078 0.95269 0.93327 0.98999 1.77248 1.11940 1.12361 1.10107 1.46217 1.17758 1.15254 1.38800 0.71482 1.22680 0.95325 0.89233 1.00032 1.20927 0.95175 0.97613 1.01332 1.21028 0.98855 0.91584 0.96375 1.22273 0.96217 0.82400 0.97253 0.88220 1.23246 1.00827 0.98495 0.96884 1.21241 0.91916 0.98591 0.83311 1.44618 1.17232 1.69101 1.01996 1.18988 0.95702 1.32185 0.89123 0.90503 1.24777 0.98389 1.00999 0.95941 1.69944 1.28687 1.49326 1.08724 0.86229 0.81439 0.78851 0.79406 1.21120 1.21625 1.21242 1.21934 0.89962 0.93566 0.94764 0.93160 0.85652 0.91878 0.84399 0.85449 0.79458 0.80175 0.85885 0.85252 0.91874 0.91346 0.93072 0.93945 0.93633 0.95068 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 7.15 59.85 0.43 1.34 16 2 N -0.58 -10.20 2.91 -172.66 -0.50 -10.70 16 3 C 0.55 9.61 7.33 -12.43 -0.09 9.52 16 4 O -0.55 -11.03 16.31 5.29 0.09 -10.94 16 5 C -0.13 -1.86 5.20 -104.93 -0.55 -2.41 16 6 C -0.08 -0.99 7.50 -39.24 -0.29 -1.28 16 7 C -0.13 -1.35 9.56 -39.33 -0.38 -1.72 16 8 C 0.02 0.20 5.88 -104.81 -0.62 -0.41 16 9 C -0.20 -1.83 6.04 -105.35 -0.64 -2.46 16 10 C 0.07 0.65 11.42 -17.04 -0.19 0.46 16 11 N -0.30 -2.90 12.66 30.82 0.39 -2.51 16 12 N -0.47 -3.25 7.32 30.64 0.22 -3.02 16 13 H 0.44 1.53 8.96 -182.68 -1.64 -0.11 16 14 C 0.08 0.52 11.38 -16.89 -0.19 0.32 16 15 C -0.13 -1.34 9.54 -39.33 -0.38 -1.72 16 16 C -0.06 -0.75 9.62 -39.24 -0.38 -1.12 16 17 C 0.12 2.27 3.66 -65.78 -0.24 2.02 16 18 H 0.10 1.83 7.02 -51.93 -0.36 1.46 16 19 C -0.16 -2.89 6.43 -24.89 -0.16 -3.05 16 20 C 0.17 3.96 4.30 -3.06 -0.01 3.94 16 21 N -0.60 -14.33 1.90 -169.98 -0.32 -14.65 16 22 C -0.23 -6.07 9.87 -15.06 -0.15 -6.22 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 25 N -0.92 -25.46 10.31 55.49 0.57 -24.89 16 26 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.12 2.53 6.51 -2.47 -0.02 2.52 16 31 H 0.05 0.81 6.98 -51.93 -0.36 0.45 16 32 H 0.13 2.64 4.57 -51.93 -0.24 2.40 16 33 H 0.06 0.97 5.63 -51.93 -0.29 0.67 16 34 H 0.14 1.69 5.49 -52.49 -0.29 1.40 16 35 H 0.13 1.07 7.03 -52.49 -0.37 0.70 16 36 H 0.19 1.29 7.34 -52.49 -0.39 0.90 16 37 H 0.18 0.62 7.27 -52.49 -0.38 0.23 16 38 H 0.12 0.88 7.00 -52.49 -0.37 0.51 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.25 6.26 -51.93 -0.33 0.92 16 43 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -32.63 367.01 -10.05 -42.68 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.06 Total: 2.78 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.95 Total: -0.49 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.36 Total: -55.78 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.63 -10.05 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033492625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.159 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds