Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99693 * 2 1 4 4 O 1.21586 * 119.99595 * 184.64589 * 3 2 1 5 5 C 1.47626 * 120.00067 * 4.65174 * 3 2 1 6 6 C 1.39756 * 120.02715 * 319.72740 * 5 3 2 7 7 C 1.37616 * 119.97103 * 179.97438 * 6 5 3 8 8 C 1.39529 * 120.02669 * 359.97438 * 7 6 5 9 9 C 1.48266 * 119.96801 * 179.97438 * 8 7 6 10 10 C 1.40945 * 126.24986 * 359.69537 * 9 8 7 11 11 N 1.30634 * 108.07039 * 179.87792 * 10 9 8 12 12 N 1.39996 * 108.56500 * 0.37585 * 11 10 9 13 13 H 0.96997 * 125.87304 * 179.79767 * 12 11 10 14 14 C 1.34712 * 108.25739 * 359.75532 * 12 11 10 15 15 C 1.39521 * 120.05541 * 0.27277 * 8 7 6 16 16 C 1.37618 * 120.02843 * 359.48871 * 15 8 7 17 17 C 1.46496 * 120.00255 * 180.02562 * 2 1 3 18 18 H 1.09000 * 110.88664 * 180.70276 * 17 2 1 19 19 C 1.55160 * 111.00357 * 56.81694 * 17 2 1 20 20 C 1.54324 * 102.94493 * 277.42776 * 19 17 2 21 21 N 1.47027 * 107.27161 * 337.81101 * 20 19 17 22 22 C 1.36936 * 125.65046 * 178.97956 * 21 20 19 23 23 H 1.07999 * 119.99845 * 179.97438 * 22 21 20 24 24 C 1.38811 * 119.99530 * 359.96892 * 22 21 20 25 25 N 1.31612 * 120.00655 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99689 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47412 * 59.99708 * 26 24 22 28 28 H 1.48503 * 109.47154 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46928 * 300.00054 * 26 24 22 30 30 C 1.47526 * 108.71557 * 358.93534 * 21 20 19 31 31 H 1.08995 * 109.46750 * 88.54943 * 1 2 3 32 32 H 1.09003 * 109.46733 * 208.54619 * 1 2 3 33 33 H 1.09002 * 109.47255 * 328.54707 * 1 2 3 34 34 H 1.07999 * 120.01316 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.98579 * 180.02562 * 7 6 5 36 36 H 1.07996 * 125.96483 * 0.02640 * 10 9 8 37 37 H 1.08001 * 126.19811 * 180.02562 * 14 12 11 38 38 H 1.07998 * 119.98654 * 179.72582 * 15 8 7 39 39 H 1.07996 * 120.01059 * 180.28267 * 16 15 8 40 40 H 1.08998 * 110.71993 * 35.79884 * 19 17 2 41 41 H 1.09003 * 110.71981 * 159.06696 * 19 17 2 42 42 H 1.08998 * 109.88004 * 97.22274 * 20 19 17 43 43 H 1.08992 * 109.88333 * 218.23526 * 20 19 17 44 44 H 0.96993 * 120.00511 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.37870 * 265.31446 * 30 21 20 46 46 H 1.09003 * 110.41379 * 142.94995 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1690 -0.0853 5 6 1.4043 2.4436 0.1037 6 6 0.2033 2.6176 -0.5894 7 6 -0.4808 3.8076 -0.4915 8 6 0.0241 4.8401 0.2997 9 6 -0.7137 6.1220 0.4038 10 6 -1.9262 6.4404 -0.2404 11 7 -2.2591 7.6567 0.1008 12 7 -1.2777 8.1626 0.9615 13 1 -1.2741 9.0455 1.3630 14 6 -0.3395 7.2119 1.1370 15 6 1.2256 4.6695 0.9880 16 6 1.9091 3.4786 0.8956 17 6 2.1976 -1.2687 -0.0006 18 1 3.2738 -1.0960 0.0120 19 6 1.7891 -2.1462 -1.2133 20 6 0.4934 -2.8280 -0.7257 21 7 0.5122 -2.8008 0.7442 22 6 -0.4695 -3.2898 1.5641 23 1 -0.3607 -3.2221 2.6365 24 6 -1.6045 -3.8722 1.0169 25 7 -1.7369 -3.9550 -0.2900 26 14 -2.9441 -4.5385 2.1354 27 1 -3.4766 -3.4390 2.9795 28 1 -4.0410 -5.1057 1.3105 29 1 -2.3793 -5.6013 3.0053 30 6 1.7644 -2.1606 1.1898 31 1 -0.3632 0.0260 -1.0273 32 1 -0.3633 -0.9028 0.4911 33 1 -0.3634 0.8767 0.5362 34 1 -0.1883 1.8181 -1.2008 35 1 -1.4092 3.9422 -1.0266 36 1 -2.4840 5.7913 -0.8990 37 1 0.5476 7.2961 1.7472 38 1 1.6176 5.4710 1.5965 39 1 2.8368 3.3452 1.4321 40 1 1.5933 -1.5270 -2.0887 41 1 2.5579 -2.8883 -1.4286 42 1 -0.3745 -2.2820 -1.0954 43 1 0.4611 -3.8585 -1.0794 44 1 -2.5301 -4.3616 -0.6723 45 1 2.5242 -2.9147 1.3949 46 1 1.5853 -1.5506 2.0752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033492625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 93.568801 kcal Electronic energy + Delta-G solvation = -29019.099241 eV Core-core repulsion = 25103.963006 eV Total energy + Delta-G solvation = -3915.136235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18473 -41.50139 -39.67721 -38.67305 -35.90410 -34.28219 -33.37761 -32.47455 -31.78684 -31.13060 -29.86783 -29.17387 -27.56202 -26.34173 -24.75706 -24.11920 -22.38576 -22.13703 -21.90352 -21.11441 -20.23490 -19.10874 -18.90039 -18.30384 -17.57981 -16.67408 -16.58671 -16.31911 -16.05465 -15.68298 -15.62682 -15.43724 -15.33123 -14.85693 -14.49565 -14.34066 -14.22436 -13.83484 -13.73396 -13.65430 -13.42625 -13.36910 -13.06051 -12.85225 -12.80621 -12.69661 -12.32527 -12.05096 -12.00144 -11.82554 -11.78653 -11.64496 -11.51656 -10.90367 -10.71954 -10.67758 -10.58703 -9.87301 -9.67343 -8.81253 -8.74207 -7.79966 -5.15187 -0.17914 0.51999 0.98036 1.50987 1.52194 1.55252 1.58507 1.93872 2.00972 2.14812 2.52958 3.02955 3.39271 3.52261 3.64342 3.68980 3.85758 3.91838 4.02589 4.04634 4.12411 4.26887 4.32090 4.38084 4.46957 4.52641 4.61169 4.64938 4.69633 4.71977 4.86726 4.90513 4.93705 4.98483 5.05415 5.15593 5.27012 5.34983 5.46312 5.50905 5.60382 5.64150 5.64832 5.70838 5.82584 5.99544 6.22287 6.38201 6.47042 6.65491 7.12255 7.14708 7.79492 8.44370 9.29277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002774 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.426753 B =10090.817981 C =11547.762235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.583 5.583 3 C 0.554 3.446 4 O -0.583 6.583 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.131 4.131 8 C 0.032 3.968 9 C -0.231 4.231 10 C 0.064 3.936 11 N -0.330 5.330 12 N -0.465 5.465 13 H 0.455 0.545 14 C 0.099 3.901 15 C -0.127 4.127 16 C -0.067 4.067 17 C 0.131 3.869 18 H 0.107 0.893 19 C -0.141 4.141 20 C 0.187 3.813 21 N -0.614 5.614 22 C -0.239 4.239 23 H 0.078 0.922 24 C -0.054 4.054 25 N -0.944 5.944 26 Si 0.971 3.029 27 H -0.277 1.277 28 H -0.296 1.296 29 H -0.284 1.284 30 C 0.126 3.874 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.200 0.800 37 H 0.220 0.780 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.006 0.994 44 H 0.247 0.753 45 H 0.039 0.961 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 23.776 1.623 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.313 5.313 3 C 0.345 3.655 4 O -0.466 6.466 5 C -0.162 4.162 6 C -0.102 4.102 7 C -0.149 4.149 8 C 0.030 3.970 9 C -0.242 4.242 10 C -0.123 4.123 11 N -0.152 5.152 12 N -0.172 5.172 13 H 0.302 0.698 14 C -0.051 4.051 15 C -0.145 4.145 16 C -0.086 4.086 17 C 0.027 3.973 18 H 0.125 0.875 19 C -0.180 4.180 20 C 0.063 3.937 21 N -0.341 5.341 22 C -0.368 4.368 23 H 0.096 0.904 24 C -0.248 4.248 25 N -0.593 5.593 26 Si 0.800 3.200 27 H -0.203 1.203 28 H -0.222 1.222 29 H -0.210 1.210 30 C 0.000 4.000 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.217 0.783 37 H 0.236 0.764 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.812 24.598 1.429 24.799 hybrid contribution -0.260 -1.333 0.566 1.471 sum 2.552 23.265 1.995 23.490 Atomic orbital electron populations 1.22394 0.78297 1.05058 1.01756 1.47653 1.07799 1.04922 1.70916 1.18848 0.86739 0.84437 0.75469 1.90701 1.15092 1.87953 1.52810 1.19815 0.97782 0.94205 1.04422 1.21573 0.92572 0.98371 0.97695 1.21244 1.01200 0.92133 1.00305 1.18352 0.92988 0.91351 0.94318 1.19028 0.99834 0.95955 1.09385 1.24385 0.95515 0.93374 0.98987 1.77213 1.13481 1.12921 1.11582 1.46299 1.17067 1.15979 1.37886 0.69765 1.23264 0.95530 0.87968 0.98385 1.21242 0.94658 0.97480 1.01111 1.21142 0.99135 0.92045 0.96258 1.22125 0.96595 0.82628 0.95966 0.87533 1.23117 0.98970 0.98676 0.97240 1.20957 0.93320 0.96489 0.82972 1.44761 1.17922 1.69114 1.02324 1.19275 0.96351 1.31555 0.89594 0.90387 1.25475 1.00380 1.01832 0.97141 1.70136 1.28822 1.50238 1.10061 0.85271 0.78777 0.78243 0.77707 1.20250 1.22231 1.21002 1.22010 0.88762 0.93799 0.95468 0.92485 0.89319 0.90133 0.84748 0.83449 0.78304 0.76397 0.82352 0.85345 0.90698 0.89799 0.95197 0.97563 0.94370 0.94329 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.33 7.15 127.77 0.91 3.24 16 2 N -0.58 -20.51 2.91 -818.44 -2.38 -22.89 16 3 C 0.55 19.18 7.33 86.72 0.64 19.81 16 4 O -0.58 -23.23 16.31 -3.99 -0.07 -23.30 16 5 C -0.16 -4.47 5.20 -20.06 -0.10 -4.58 16 6 C -0.08 -2.03 7.50 22.49 0.17 -1.86 16 7 C -0.13 -2.56 9.56 22.43 0.21 -2.34 16 8 C 0.03 0.56 5.88 -19.99 -0.12 0.44 16 9 C -0.23 -3.49 6.04 -20.33 -0.12 -3.61 16 10 C 0.06 1.04 11.42 85.53 0.98 2.02 16 11 N -0.33 -5.80 12.66 -56.41 -0.71 -6.51 16 12 N -0.46 -4.91 7.32 -56.96 -0.42 -5.32 16 13 H 0.46 1.71 8.96 -213.39 -1.91 -0.20 16 14 C 0.10 0.94 11.38 83.86 0.95 1.89 16 15 C -0.13 -2.18 9.54 22.43 0.21 -1.97 16 16 C -0.07 -1.57 9.62 22.49 0.22 -1.36 16 17 C 0.13 4.82 3.66 46.39 0.17 4.99 16 18 H 0.11 3.83 7.02 -2.39 -0.02 3.82 16 19 C -0.14 -5.23 6.43 31.78 0.20 -5.02 16 20 C 0.19 8.77 4.30 86.73 0.37 9.15 16 21 N -0.61 -29.80 1.90 -691.71 -1.31 -31.12 16 22 C -0.24 -12.71 9.87 84.03 0.83 -11.88 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.05 -2.95 5.49 84.86 0.47 -2.48 16 25 N -0.94 -53.78 10.31 21.65 0.22 -53.55 16 26 Si 0.97 44.17 29.55 68.60 2.03 46.20 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 C 0.13 5.13 6.51 86.84 0.57 5.70 16 31 H 0.06 1.86 6.98 -2.39 -0.02 1.84 16 32 H 0.09 3.82 4.57 -2.39 -0.01 3.81 16 33 H 0.08 2.46 5.63 -2.39 -0.01 2.45 16 34 H 0.13 3.24 5.49 -2.91 -0.02 3.23 16 35 H 0.15 2.19 7.03 -2.91 -0.02 2.17 16 36 H 0.20 2.40 7.34 -2.91 -0.02 2.38 16 37 H 0.22 0.24 7.27 -2.91 -0.02 0.22 16 38 H 0.16 1.50 7.00 -2.91 -0.02 1.48 16 39 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.03 1.52 6.26 -2.39 -0.01 1.50 16 43 H 0.01 0.33 7.50 -2.39 -0.02 0.31 16 44 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.03 367.01 3.04 -68.99 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.88 Total: 15.36 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.56 Total: 12.14 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.60 Total: -119.39 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.07 Total: -23.30 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.03 3.04 -68.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033492625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.558 kcal (2) G-P(sol) polarization free energy of solvation -72.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds