Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 119.99735 * 2 1 4 4 O 1.21548 * 119.99843 * 185.85786 * 3 2 1 5 5 C 1.47861 * 119.99872 * 5.85601 * 3 2 1 6 6 C 1.39616 * 120.10965 * 214.75451 * 5 3 2 7 7 C 1.37982 * 119.98720 * 179.74233 * 6 5 3 8 8 C 1.38266 * 120.21360 * 0.53686 * 7 6 5 9 9 C 1.38917 * 120.22927 * 359.73937 * 8 7 6 10 10 N 1.40213 * 119.99613 * 180.02562 * 9 8 7 11 11 C 1.35217 * 126.04891 * 359.97404 * 10 9 8 12 12 C 1.35326 * 107.70693 * 179.97438 * 11 10 9 13 13 C 1.39919 * 107.93227 * 359.97438 * 12 11 10 14 14 N 1.30871 * 108.24090 * 359.74502 * 13 12 11 15 15 C 1.38597 * 120.00876 * 359.97438 * 9 8 7 16 16 C 1.46495 * 120.00177 * 179.97438 * 2 1 3 17 17 H 1.09006 * 110.91326 * 176.10167 * 16 2 1 18 18 C 1.55157 * 111.00681 * 300.00164 * 16 2 1 19 19 C 1.54328 * 102.94103 * 82.57318 * 18 16 2 20 20 N 1.47026 * 107.26967 * 22.19407 * 19 18 16 21 21 C 1.36937 * 125.64851 * 181.02658 * 20 19 18 22 22 H 1.07992 * 119.99813 * 174.91568 * 21 20 19 23 23 C 1.38810 * 119.99709 * 354.90538 * 21 20 19 24 24 N 1.31619 * 120.00003 * 214.18554 * 23 21 20 25 25 Si 1.86800 * 120.00006 * 34.46010 * 23 21 20 26 26 H 1.48502 * 109.47148 * 173.94666 * 25 23 21 27 27 H 1.48496 * 109.47315 * 293.94922 * 25 23 21 28 28 H 1.48504 * 109.46875 * 53.95312 * 25 23 21 29 29 C 1.47424 * 108.69997 * 1.28740 * 20 19 18 30 30 H 1.08992 * 109.47749 * 274.49032 * 1 2 3 31 31 H 1.09000 * 109.47036 * 34.49962 * 1 2 3 32 32 H 1.09001 * 109.46604 * 154.49145 * 1 2 3 33 33 H 1.08004 * 120.00824 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.89461 * 180.27304 * 7 6 5 35 35 H 1.08000 * 119.88264 * 179.76087 * 8 7 6 36 36 H 1.07996 * 126.14695 * 359.97438 * 11 10 9 37 37 H 1.08004 * 126.03109 * 180.02562 * 12 11 10 38 38 H 1.07997 * 125.87461 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.11165 * 180.02562 * 15 9 8 40 40 H 1.09002 * 110.72135 * 324.21221 * 18 16 2 41 41 H 1.08996 * 110.87698 * 201.00960 * 18 16 2 42 42 H 1.08999 * 109.87942 * 262.77610 * 19 18 16 43 43 H 1.08994 * 110.00865 * 141.68506 * 19 18 16 44 44 H 0.97001 * 119.99755 * 5.27784 * 24 23 21 45 45 H 1.08999 * 110.36886 * 94.48344 * 29 20 19 46 46 H 1.09010 * 110.36213 * 216.80374 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3496 1.1701 -0.1074 5 6 1.4053 2.4444 0.1307 6 6 1.8540 3.5820 -0.5430 7 6 1.1645 4.7712 -0.4235 8 6 0.0351 4.8438 0.3708 9 6 -0.4161 3.7189 1.0497 10 7 -1.5622 3.7979 1.8535 11 6 -2.3183 4.9007 2.0550 12 6 -3.3274 4.5609 2.8901 13 6 -3.1846 3.2062 3.2095 14 7 -2.1307 2.7468 2.5843 15 6 0.2660 2.5181 0.9317 16 6 2.1975 -1.2687 0.0006 17 1 3.2719 -1.0977 -0.0687 18 6 1.8484 -2.1119 1.2553 19 6 0.5312 -2.8062 0.8496 20 7 0.4795 -2.8198 -0.6197 21 6 -0.5402 -3.3304 -1.3777 22 1 -0.5226 -3.2193 -2.4517 23 6 -1.5964 -3.9911 -0.7655 24 7 -2.1772 -5.0056 -1.3702 25 14 -2.1984 -3.4355 0.9133 26 1 -3.4174 -4.2002 1.2801 27 1 -1.1386 -3.6786 1.9246 28 1 -2.5180 -1.9859 0.8697 29 6 1.7101 -2.1982 -1.1417 30 1 -0.3634 0.0804 1.0244 31 1 -0.3633 0.8469 -0.5821 32 1 -0.3632 -0.9275 -0.4426 33 1 2.7381 3.5301 -1.1612 34 1 1.5104 5.6491 -0.9488 35 1 -0.4983 5.7783 0.4636 36 1 -2.1475 5.8772 1.6264 37 1 -4.1061 5.2191 3.2464 38 1 -3.8350 2.6366 3.8567 39 1 -0.0835 1.6425 1.4583 40 1 1.6944 -1.4686 2.1217 41 1 2.6262 -2.8484 1.4571 42 1 -0.3183 -2.2495 1.2454 43 1 0.5150 -3.8272 1.2306 44 1 -1.8196 -5.3406 -2.2074 45 1 2.4580 -2.9610 -1.3584 46 1 1.4907 -1.6158 -2.0367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033505690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 140.098514 kcal Electronic energy + Delta-G solvation = -29948.955612 eV Core-core repulsion = 26035.837058 eV Total energy + Delta-G solvation = -3913.118555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77282 -40.47001 -38.86076 -37.59169 -34.58794 -33.75547 -32.62347 -31.50915 -30.44365 -29.59823 -29.21880 -28.42331 -26.44388 -24.60831 -23.72510 -23.43738 -21.98019 -20.87246 -20.76793 -20.29883 -19.20865 -18.08642 -17.48618 -16.98658 -16.53367 -16.15478 -15.74371 -15.48081 -15.16934 -14.95461 -14.55605 -14.35909 -14.11116 -13.70766 -13.57713 -13.37159 -13.20005 -13.03436 -12.78730 -12.76423 -12.32278 -12.06040 -11.96705 -11.69067 -11.51604 -11.27336 -11.00627 -10.92073 -10.84791 -10.79890 -10.59058 -10.14601 -9.83672 -9.69688 -9.41766 -9.26654 -9.07773 -8.54710 -8.33889 -8.27238 -7.11311 -6.42542 -3.18368 0.44980 0.76800 1.86363 2.09917 2.54644 2.76004 3.09869 3.42136 3.51421 3.55437 3.68631 4.11631 4.35893 4.49278 4.58476 4.62093 4.70796 4.89259 4.92410 4.96565 5.08212 5.13972 5.23742 5.34444 5.36092 5.40652 5.49794 5.53922 5.60797 5.65820 5.80084 5.84074 5.88802 5.96586 6.00395 6.11881 6.21328 6.24982 6.29012 6.37892 6.45152 6.51368 6.61249 6.79633 6.86002 6.89660 7.37940 7.56271 7.67105 8.21597 8.29133 8.97475 9.54949 10.21281 11.04906 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004245 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.927102 B = 6594.726478 C = 8550.575143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.582 5.582 3 C 0.556 3.444 4 O -0.542 6.542 5 C -0.099 4.099 6 C -0.075 4.075 7 C -0.100 4.100 8 C -0.123 4.123 9 C 0.151 3.849 10 N -0.322 5.322 11 C 0.050 3.950 12 C -0.262 4.262 13 C 0.056 3.944 14 N -0.284 5.284 15 C -0.091 4.091 16 C 0.120 3.880 17 H 0.108 0.892 18 C -0.141 4.141 19 C 0.118 3.882 20 N -0.606 5.606 21 C -0.347 4.347 22 H 0.080 0.920 23 C -0.004 4.004 24 N -0.900 5.900 25 Si 1.025 2.975 26 H -0.298 1.298 27 H -0.277 1.277 28 H -0.293 1.293 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.191 0.809 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.044 0.956 44 H 0.266 0.734 45 H 0.040 0.960 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 22.488 6.605 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.312 5.312 3 C 0.345 3.655 4 O -0.421 6.421 5 C -0.102 4.102 6 C -0.095 4.095 7 C -0.119 4.119 8 C -0.144 4.144 9 C 0.059 3.941 10 N -0.098 5.098 11 C -0.092 4.092 12 C -0.290 4.290 13 C -0.131 4.131 14 N -0.103 5.103 15 C -0.111 4.111 16 C 0.016 3.984 17 H 0.126 0.874 18 C -0.179 4.179 19 C -0.007 4.007 20 N -0.335 5.335 21 C -0.473 4.473 22 H 0.098 0.902 23 C -0.207 4.207 24 N -0.538 5.538 25 Si 0.857 3.143 26 H -0.226 1.226 27 H -0.204 1.204 28 H -0.220 1.220 29 C 0.003 3.997 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.172 0.828 38 H 0.208 0.792 39 H 0.172 0.828 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.900 21.106 7.359 22.539 hybrid contribution 0.263 1.173 -0.890 1.496 sum 3.163 22.279 6.469 23.414 Atomic orbital electron populations 1.22593 0.78492 1.06544 1.01449 1.47619 1.07653 1.05045 1.70885 1.18244 0.86924 0.83466 0.76916 1.90746 1.13512 1.87203 1.50684 1.19856 0.95770 0.94810 0.99802 1.21299 0.99290 0.91067 0.97805 1.20909 0.94433 0.98165 0.98351 1.20940 0.98277 0.96901 0.98288 1.17389 0.86853 0.95346 0.94556 1.45906 1.20301 1.07705 1.35899 1.22609 0.93237 0.93070 1.00296 1.21615 1.03538 0.96950 1.06904 1.24139 0.95477 0.94846 0.98677 1.77570 1.12042 1.10055 1.10600 1.21499 0.93500 0.97556 0.98552 1.22396 0.96756 0.82379 0.96872 0.87436 1.22984 0.98976 0.98803 0.97181 1.21955 0.94434 0.98272 0.86038 1.44907 1.17836 1.70673 1.00047 1.19900 1.01958 1.34304 0.91156 0.90223 1.25527 0.96663 0.94225 1.04305 1.70915 1.46224 1.18262 1.18410 0.84582 0.76122 0.76093 0.77536 1.22565 1.20401 1.22039 1.21939 0.89781 0.93342 0.94651 0.92840 0.92081 0.85766 0.84335 0.84260 0.84940 0.80596 0.82850 0.79242 0.82822 0.91221 0.90120 0.95458 0.93820 0.92423 0.94186 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 7.20 59.85 0.43 1.34 16 2 N -0.58 -10.01 2.91 -172.46 -0.50 -10.52 16 3 C 0.56 9.30 7.37 -12.32 -0.09 9.20 16 4 O -0.54 -10.17 16.21 5.32 0.09 -10.09 16 5 C -0.10 -1.39 5.17 -104.99 -0.54 -1.93 16 6 C -0.08 -0.86 9.61 -39.16 -0.38 -1.23 16 7 C -0.10 -0.87 10.02 -39.66 -0.40 -1.26 16 8 C -0.12 -1.11 9.45 -39.32 -0.37 -1.48 16 9 C 0.15 1.83 6.68 -83.64 -0.56 1.27 16 10 N -0.32 -3.95 3.80 -10.73 -0.04 -4.00 16 11 C 0.05 0.46 10.80 -17.10 -0.18 0.27 16 12 C -0.26 -2.28 10.81 -39.99 -0.43 -2.72 16 13 C 0.06 0.59 12.03 -17.33 -0.21 0.39 16 14 N -0.28 -3.94 11.86 30.64 0.36 -3.58 16 15 C -0.09 -1.26 7.42 -38.99 -0.29 -1.55 16 16 C 0.12 2.10 3.66 -65.67 -0.24 1.86 16 17 H 0.11 1.82 7.02 -51.93 -0.36 1.46 16 18 C -0.14 -2.42 6.48 -24.89 -0.16 -2.58 16 19 C 0.12 2.50 3.53 -3.06 -0.01 2.49 16 20 N -0.61 -14.21 1.85 -169.93 -0.31 -14.52 16 21 C -0.35 -9.54 9.91 -15.06 -0.15 -9.69 16 22 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 23 C 0.00 -0.12 5.42 -17.43 -0.09 -0.22 16 24 N -0.90 -27.51 13.70 55.49 0.76 -26.75 16 25 Si 1.03 25.36 25.16 -169.99 -4.28 21.09 16 26 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 27 H -0.28 -6.32 5.09 56.52 0.29 -6.03 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.13 2.59 6.46 -2.41 -0.02 2.57 16 30 H 0.05 0.92 6.35 -51.93 -0.33 0.59 16 31 H 0.06 1.00 6.48 -51.93 -0.34 0.66 16 32 H 0.12 2.62 4.45 -51.93 -0.23 2.39 16 33 H 0.14 1.48 7.99 -52.48 -0.42 1.06 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.78 6.72 -52.49 -0.35 0.42 16 36 H 0.18 0.91 7.03 -52.49 -0.37 0.54 16 37 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.15 2.34 4.87 -52.49 -0.26 2.09 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.03 0.61 3.76 -51.93 -0.20 0.41 16 43 H 0.04 1.00 6.82 -51.93 -0.35 0.64 16 44 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -33.86 361.85 -8.02 -41.88 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.86 Total: 4.30 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.69 Total: -3.26 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.27 Total: -59.37 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.28 Total: 21.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.86 -8.02 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033505690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.981 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds