Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 119.99735 * 2 1 4 4 O 1.21548 * 119.99843 * 185.85786 * 3 2 1 5 5 C 1.47861 * 119.99872 * 5.85601 * 3 2 1 6 6 C 1.39616 * 120.10965 * 214.75451 * 5 3 2 7 7 C 1.37982 * 119.98720 * 179.74233 * 6 5 3 8 8 C 1.38266 * 120.21360 * 0.53686 * 7 6 5 9 9 C 1.38917 * 120.22927 * 359.73937 * 8 7 6 10 10 N 1.40213 * 119.99613 * 180.02562 * 9 8 7 11 11 C 1.35217 * 126.04891 * 359.97404 * 10 9 8 12 12 C 1.35326 * 107.70693 * 179.97438 * 11 10 9 13 13 C 1.39919 * 107.93227 * 359.97438 * 12 11 10 14 14 N 1.30871 * 108.24090 * 359.74502 * 13 12 11 15 15 C 1.38597 * 120.00876 * 359.97438 * 9 8 7 16 16 C 1.46495 * 120.00177 * 179.97438 * 2 1 3 17 17 H 1.09006 * 110.91326 * 176.10167 * 16 2 1 18 18 C 1.55157 * 111.00681 * 300.00164 * 16 2 1 19 19 C 1.54328 * 102.94103 * 82.57318 * 18 16 2 20 20 N 1.47026 * 107.26967 * 22.19407 * 19 18 16 21 21 C 1.36937 * 125.64851 * 181.02658 * 20 19 18 22 22 H 1.07992 * 119.99813 * 174.91568 * 21 20 19 23 23 C 1.38810 * 119.99709 * 354.90538 * 21 20 19 24 24 N 1.31619 * 120.00003 * 214.18554 * 23 21 20 25 25 Si 1.86800 * 120.00006 * 34.46010 * 23 21 20 26 26 H 1.48502 * 109.47148 * 173.94666 * 25 23 21 27 27 H 1.48496 * 109.47315 * 293.94922 * 25 23 21 28 28 H 1.48504 * 109.46875 * 53.95312 * 25 23 21 29 29 C 1.47424 * 108.69997 * 1.28740 * 20 19 18 30 30 H 1.08992 * 109.47749 * 274.49032 * 1 2 3 31 31 H 1.09000 * 109.47036 * 34.49962 * 1 2 3 32 32 H 1.09001 * 109.46604 * 154.49145 * 1 2 3 33 33 H 1.08004 * 120.00824 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.89461 * 180.27304 * 7 6 5 35 35 H 1.08000 * 119.88264 * 179.76087 * 8 7 6 36 36 H 1.07996 * 126.14695 * 359.97438 * 11 10 9 37 37 H 1.08004 * 126.03109 * 180.02562 * 12 11 10 38 38 H 1.07997 * 125.87461 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.11165 * 180.02562 * 15 9 8 40 40 H 1.09002 * 110.72135 * 324.21221 * 18 16 2 41 41 H 1.08996 * 110.87698 * 201.00960 * 18 16 2 42 42 H 1.08999 * 109.87942 * 262.77610 * 19 18 16 43 43 H 1.08994 * 110.00865 * 141.68506 * 19 18 16 44 44 H 0.97001 * 119.99755 * 5.27784 * 24 23 21 45 45 H 1.08999 * 110.36886 * 94.48344 * 29 20 19 46 46 H 1.09010 * 110.36213 * 216.80374 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3496 1.1701 -0.1074 5 6 1.4053 2.4444 0.1307 6 6 1.8540 3.5820 -0.5430 7 6 1.1645 4.7712 -0.4235 8 6 0.0351 4.8438 0.3708 9 6 -0.4161 3.7189 1.0497 10 7 -1.5622 3.7979 1.8535 11 6 -2.3183 4.9007 2.0550 12 6 -3.3274 4.5609 2.8901 13 6 -3.1846 3.2062 3.2095 14 7 -2.1307 2.7468 2.5843 15 6 0.2660 2.5181 0.9317 16 6 2.1975 -1.2687 0.0006 17 1 3.2719 -1.0977 -0.0687 18 6 1.8484 -2.1119 1.2553 19 6 0.5312 -2.8062 0.8496 20 7 0.4795 -2.8198 -0.6197 21 6 -0.5402 -3.3304 -1.3777 22 1 -0.5226 -3.2193 -2.4517 23 6 -1.5964 -3.9911 -0.7655 24 7 -2.1772 -5.0056 -1.3702 25 14 -2.1984 -3.4355 0.9133 26 1 -3.4174 -4.2002 1.2801 27 1 -1.1386 -3.6786 1.9246 28 1 -2.5180 -1.9859 0.8697 29 6 1.7101 -2.1982 -1.1417 30 1 -0.3634 0.0804 1.0244 31 1 -0.3633 0.8469 -0.5821 32 1 -0.3632 -0.9275 -0.4426 33 1 2.7381 3.5301 -1.1612 34 1 1.5104 5.6491 -0.9488 35 1 -0.4983 5.7783 0.4636 36 1 -2.1475 5.8772 1.6264 37 1 -4.1061 5.2191 3.2464 38 1 -3.8350 2.6366 3.8567 39 1 -0.0835 1.6425 1.4583 40 1 1.6944 -1.4686 2.1217 41 1 2.6262 -2.8484 1.4571 42 1 -0.3183 -2.2495 1.2454 43 1 0.5150 -3.8272 1.2306 44 1 -1.8196 -5.3406 -2.2074 45 1 2.4580 -2.9610 -1.3584 46 1 1.4907 -1.6158 -2.0367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033505690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 119.064665 kcal Electronic energy + Delta-G solvation = -29949.867709 eV Core-core repulsion = 26035.837058 eV Total energy + Delta-G solvation = -3914.030651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53537 -41.69541 -39.99591 -38.97667 -36.13273 -34.65416 -34.41369 -32.63782 -31.44528 -31.05232 -30.06641 -29.94637 -27.88511 -26.10095 -24.95696 -24.44484 -23.04556 -22.50891 -21.61412 -21.44176 -20.40252 -19.55522 -19.10663 -18.23114 -17.53302 -17.35954 -16.84205 -16.77882 -16.31206 -16.14834 -15.78217 -15.47983 -15.32780 -15.20463 -14.99383 -14.46509 -14.44968 -14.37342 -13.83214 -13.68460 -13.66253 -13.40800 -13.28821 -13.10778 -12.84342 -12.72445 -12.54901 -12.51458 -12.38383 -11.93278 -11.84221 -11.68434 -11.42079 -11.07575 -10.98050 -10.49718 -10.15777 -10.15056 -9.89785 -9.12122 -9.09260 -8.69028 -5.36930 -0.37677 -0.09068 1.10140 1.36735 1.42092 1.49646 1.60553 1.68416 1.82882 1.86690 2.54550 2.65654 2.90846 3.16256 3.33980 3.55438 3.66173 3.73967 3.75574 3.89286 4.03466 4.06908 4.09126 4.15123 4.22251 4.30442 4.32682 4.43454 4.48601 4.65348 4.71071 4.74215 4.77107 4.78119 4.84952 4.89164 5.00391 5.04599 5.07591 5.15210 5.17331 5.23576 5.46292 5.53404 5.58297 5.70027 6.07280 6.16802 6.22525 6.63508 6.79776 6.90530 7.45429 8.11803 8.79548 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004245 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.927102 B = 6594.726478 C = 8550.575143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.586 5.586 3 C 0.558 3.442 4 O -0.567 6.567 5 C -0.122 4.122 6 C -0.082 4.082 7 C -0.083 4.083 8 C -0.107 4.107 9 C 0.137 3.863 10 N -0.337 5.337 11 C 0.051 3.949 12 C -0.264 4.264 13 C 0.048 3.952 14 N -0.344 5.344 15 C -0.108 4.108 16 C 0.129 3.871 17 H 0.120 0.880 18 C -0.127 4.127 19 C 0.113 3.887 20 N -0.619 5.619 21 C -0.330 4.330 22 H 0.050 0.950 23 C -0.055 4.055 24 N -0.939 5.939 25 Si 1.065 2.935 26 H -0.311 1.311 27 H -0.245 1.245 28 H -0.281 1.281 29 C 0.129 3.871 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.219 0.781 37 H 0.184 0.816 38 H 0.209 0.791 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.253 0.747 45 H 0.049 0.951 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 26.756 8.000 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.316 5.316 3 C 0.348 3.652 4 O -0.448 6.448 5 C -0.126 4.126 6 C -0.101 4.101 7 C -0.101 4.101 8 C -0.127 4.127 9 C 0.045 3.955 10 N -0.114 5.114 11 C -0.090 4.090 12 C -0.292 4.292 13 C -0.138 4.138 14 N -0.163 5.163 15 C -0.129 4.129 16 C 0.025 3.975 17 H 0.138 0.862 18 C -0.166 4.166 19 C -0.011 4.011 20 N -0.347 5.347 21 C -0.457 4.457 22 H 0.068 0.932 23 C -0.252 4.252 24 N -0.580 5.580 25 Si 0.892 3.108 26 H -0.240 1.240 27 H -0.170 1.170 28 H -0.208 1.208 29 C 0.003 3.997 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.200 0.800 35 H 0.192 0.808 36 H 0.235 0.765 37 H 0.201 0.799 38 H 0.226 0.774 39 H 0.149 0.851 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.462 25.407 8.770 27.100 hybrid contribution 0.103 -0.010 -1.408 1.412 sum 3.565 25.398 7.362 26.682 Atomic orbital electron populations 1.22319 0.78843 1.04840 1.01395 1.47650 1.07364 1.05350 1.71272 1.18677 0.86756 0.84075 0.75708 1.90716 1.14531 1.87632 1.51893 1.19692 0.96555 0.94292 1.02017 1.21507 0.99754 0.91305 0.97538 1.21372 0.93286 0.98231 0.97233 1.21432 0.97866 0.97249 0.96171 1.17673 0.87015 0.95717 0.95108 1.46025 1.20765 1.08295 1.36291 1.23391 0.92287 0.93696 0.99628 1.22041 1.04206 0.96378 1.06553 1.24675 0.94812 0.96242 0.98118 1.77515 1.13932 1.12166 1.12729 1.21272 0.94206 0.98015 0.99393 1.22285 0.97236 0.82224 0.95772 0.86222 1.22956 0.97276 0.99066 0.97306 1.22018 0.96733 0.97945 0.84427 1.44884 1.17830 1.70785 1.01192 1.19743 1.02896 1.32830 0.90273 0.93207 1.26592 0.97299 0.94124 1.07215 1.71015 1.47624 1.20552 1.18827 0.84084 0.75872 0.75941 0.74937 1.23978 1.17025 1.20835 1.22035 0.88589 0.93809 0.95272 0.92573 0.91367 0.89120 0.83991 0.80006 0.80835 0.76467 0.79916 0.77434 0.85131 0.89592 0.87727 0.95805 0.95029 0.93811 0.93296 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.47 7.20 127.77 0.92 3.39 16 2 N -0.59 -20.10 2.91 -817.80 -2.38 -22.48 16 3 C 0.56 18.47 7.37 86.79 0.64 19.11 16 4 O -0.57 -20.97 16.21 -3.87 -0.06 -21.04 16 5 C -0.12 -3.34 5.17 -20.10 -0.10 -3.44 16 6 C -0.08 -1.68 9.61 22.54 0.22 -1.46 16 7 C -0.08 -1.07 10.02 22.22 0.22 -0.85 16 8 C -0.11 -1.46 9.45 22.44 0.21 -1.25 16 9 C 0.14 3.04 6.68 38.05 0.25 3.30 16 10 N -0.34 -7.64 3.80 -187.86 -0.71 -8.36 16 11 C 0.05 0.75 10.80 83.50 0.90 1.65 16 12 C -0.26 -3.83 10.81 22.00 0.24 -3.59 16 13 C 0.05 0.96 12.03 85.24 1.03 1.98 16 14 N -0.34 -9.42 11.86 -56.98 -0.68 -10.09 16 15 C -0.11 -2.96 7.42 22.65 0.17 -2.79 16 16 C 0.13 4.42 3.66 46.46 0.17 4.59 16 17 H 0.12 3.88 7.02 -2.38 -0.02 3.87 16 18 C -0.13 -4.15 6.48 31.78 0.21 -3.95 16 19 C 0.11 4.73 3.53 86.73 0.31 5.03 16 20 N -0.62 -29.40 1.85 -691.55 -1.28 -30.68 16 21 C -0.33 -18.78 9.91 84.03 0.83 -17.95 16 22 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 23 C -0.06 -3.26 5.42 84.86 0.46 -2.80 16 24 N -0.94 -59.74 13.70 21.65 0.30 -59.44 16 25 Si 1.06 52.37 25.16 68.60 1.73 54.10 16 26 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 27 H -0.25 -10.75 5.09 99.48 0.51 -10.24 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 29 C 0.13 5.17 6.46 86.93 0.56 5.73 16 30 H 0.06 1.97 6.35 -2.39 -0.02 1.95 16 31 H 0.07 2.30 6.48 -2.39 -0.02 2.28 16 32 H 0.09 3.91 4.45 -2.39 -0.01 3.90 16 33 H 0.14 2.76 7.99 -2.91 -0.02 2.74 16 34 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.17 0.90 6.72 -2.91 -0.02 0.88 16 36 H 0.22 1.00 7.03 -2.91 -0.02 0.98 16 37 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.13 4.10 4.87 -2.91 -0.01 4.08 16 40 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.02 1.04 3.76 -2.39 -0.01 1.03 16 43 H 0.03 1.41 6.82 -2.39 -0.02 1.39 16 44 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -78.67 361.85 4.92 -73.76 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.78 Total: 17.53 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 7.23 Total: 6.70 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -4.75 Total: -131.05 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 1.73 Total: 54.10 kcal Total: -78.67 4.92 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033505690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.821 kcal (2) G-P(sol) polarization free energy of solvation -78.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds