Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00059 * 2 1 4 4 O 1.21552 * 120.00393 * 184.52553 * 3 2 1 5 5 C 1.47860 * 120.00004 * 4.52453 * 3 2 1 6 6 C 1.39615 * 120.11255 * 319.34528 * 5 3 2 7 7 C 1.37985 * 119.98753 * 180.02562 * 6 5 3 8 8 C 1.38256 * 120.21705 * 359.97438 * 7 6 5 9 9 C 1.38927 * 120.22719 * 0.02636 * 8 7 6 10 10 N 1.40206 * 119.99413 * 179.97438 * 9 8 7 11 11 C 1.35223 * 126.05730 * 4.99536 * 10 9 8 12 12 C 1.35318 * 107.71707 * 180.02562 * 11 10 9 13 13 C 1.39919 * 107.93143 * 359.97438 * 12 11 10 14 14 N 1.30880 * 108.24113 * 0.02562 * 13 12 11 15 15 C 1.38591 * 120.00724 * 0.22804 * 9 8 7 16 16 C 1.46496 * 119.99902 * 180.02562 * 2 1 3 17 17 H 1.09002 * 110.64502 * 178.30971 * 16 2 1 18 18 C 1.55157 * 110.72241 * 54.97490 * 16 2 1 19 19 C 1.54902 * 101.58263 * 277.14137 * 18 16 2 20 20 N 1.47431 * 104.83280 * 322.98511 * 19 18 16 21 21 C 1.36929 * 125.65228 * 204.09392 * 20 19 18 22 22 H 1.08003 * 120.00109 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00089 * 0.04346 * 21 20 19 24 24 N 1.31621 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99989 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47301 * 90.00253 * 25 23 21 27 27 H 1.48504 * 109.46918 * 209.99858 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99820 * 25 23 21 29 29 C 1.47026 * 108.69778 * 24.13237 * 20 19 18 30 30 H 1.09001 * 109.47021 * 90.03093 * 1 2 3 31 31 H 1.08999 * 109.47035 * 210.02934 * 1 2 3 32 32 H 1.09002 * 109.47288 * 330.03414 * 1 2 3 33 33 H 1.08004 * 120.00788 * 359.97438 * 6 5 3 34 34 H 1.07992 * 119.88977 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.88869 * 180.02562 * 8 7 6 36 36 H 1.08003 * 126.14088 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.03350 * 179.74379 * 12 11 10 38 38 H 1.07993 * 125.88041 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.11085 * 179.73851 * 15 9 8 40 40 H 1.09002 * 111.00476 * 35.21604 * 18 16 2 41 41 H 1.09004 * 111.00478 * 159.06185 * 18 16 2 42 42 H 1.09007 * 110.36970 * 204.15117 * 19 18 16 43 43 H 1.08991 * 110.46544 * 81.87252 * 19 18 16 44 44 H 0.97001 * 119.99868 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.88146 * 239.52296 * 29 20 19 46 46 H 1.09004 * 109.88439 * 118.35542 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1689 -0.0831 5 6 1.4031 2.4457 0.1010 6 6 0.2085 2.6236 -0.5994 7 6 -0.4758 3.8179 -0.5037 8 6 0.0171 4.8411 0.2848 9 6 1.2050 4.6738 0.9856 10 7 1.7007 5.7147 1.7833 11 6 1.0806 6.8900 2.0340 12 6 1.8862 7.6163 2.8431 13 6 3.0364 6.8610 3.0963 14 7 2.9264 5.7216 2.4617 15 6 1.9027 3.4799 0.8921 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0917 -0.0306 18 6 1.7506 -2.1601 -1.1893 19 6 0.4718 -2.8219 -0.6183 20 7 0.7744 -3.0625 0.8044 21 6 0.1811 -4.0076 1.5978 22 1 0.4738 -4.1048 2.6329 23 6 -0.7963 -4.8412 1.0718 24 7 -1.1524 -4.7233 -0.1899 25 14 -1.6062 -6.1301 2.1544 26 1 -2.8063 -5.5463 2.8059 27 1 -2.0105 -7.2921 1.3227 28 1 -0.6459 -6.5767 3.1953 29 6 1.8182 -2.1187 1.2304 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3633 -0.8897 0.5143 32 1 -0.3634 0.8903 0.5133 33 1 -0.1796 1.8268 -1.2167 34 1 -1.3995 3.9540 -1.0464 35 1 -0.5230 5.7736 0.3562 36 1 0.1156 7.1943 1.6563 37 1 1.6796 8.6059 3.2229 38 1 3.8717 7.1659 3.7092 39 1 2.8284 3.3496 1.4328 40 1 1.5193 -1.5550 -2.0660 41 1 2.5076 -2.9090 -1.4223 42 1 0.2724 -3.7645 -1.1283 43 1 -0.3811 -2.1505 -0.7165 44 1 -1.8356 -5.3056 -0.5574 45 1 2.6909 -2.6667 1.5856 46 1 1.4350 -1.4745 2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033505692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 130.701076 kcal Electronic energy + Delta-G solvation = -29031.812522 eV Core-core repulsion = 25118.286463 eV Total energy + Delta-G solvation = -3913.526058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81543 -40.44647 -38.76272 -37.34217 -34.69817 -33.72530 -32.20958 -31.54021 -30.45691 -29.51253 -29.03578 -27.95279 -26.36214 -24.79052 -23.82920 -23.72269 -21.73759 -20.97280 -20.40852 -20.15182 -19.11122 -18.21844 -17.01755 -16.91258 -16.45855 -16.01436 -15.64492 -15.53794 -14.95328 -14.76362 -14.68340 -14.15031 -13.99431 -13.81301 -13.74401 -13.22763 -13.11233 -12.83958 -12.80491 -12.35939 -12.16110 -11.89478 -11.86856 -11.68063 -11.51213 -11.11289 -10.99482 -10.92743 -10.86180 -10.57404 -10.36760 -10.15372 -9.91028 -9.64831 -9.55632 -9.46375 -9.28524 -8.70048 -8.35981 -8.32162 -6.89709 -5.70947 -3.12863 0.43382 0.80212 1.82140 2.04258 2.47100 2.78444 3.11931 3.36497 3.42408 3.43896 3.54754 4.13927 4.33559 4.43963 4.45532 4.56818 4.69975 4.84621 4.94391 5.09774 5.28931 5.31425 5.37505 5.40440 5.42507 5.50097 5.54674 5.61132 5.67536 5.76066 5.83778 5.88529 5.96271 6.04717 6.17069 6.25985 6.27574 6.31137 6.35712 6.53239 6.55382 6.67833 6.83935 6.97784 7.31358 7.40934 7.57562 7.61347 7.79772 8.26897 8.30378 9.16479 9.76762 10.40987 11.32590 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002403 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.055958 B =11648.880055 C =11789.569974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.584 5.584 3 C 0.555 3.445 4 O -0.539 6.539 5 C -0.096 4.096 6 C -0.098 4.098 7 C -0.098 4.098 8 C -0.123 4.123 9 C 0.148 3.852 10 N -0.321 5.321 11 C 0.052 3.948 12 C -0.263 4.263 13 C 0.053 3.947 14 N -0.286 5.286 15 C -0.067 4.067 16 C 0.125 3.875 17 H 0.101 0.899 18 C -0.154 4.154 19 C 0.144 3.856 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.126 3.874 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.190 0.810 39 H 0.146 0.854 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.022 0.978 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 23.376 -0.170 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.315 5.315 3 C 0.342 3.658 4 O -0.418 6.418 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.144 4.144 9 C 0.056 3.944 10 N -0.096 5.096 11 C -0.091 4.091 12 C -0.292 4.292 13 C -0.134 4.134 14 N -0.104 5.104 15 C -0.087 4.087 16 C 0.022 3.978 17 H 0.119 0.881 18 C -0.193 4.193 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.571 5.571 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.207 0.793 39 H 0.163 0.837 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.440 22.002 -0.509 22.055 hybrid contribution -0.983 0.295 0.816 1.311 sum 0.457 22.297 0.307 22.304 Atomic orbital electron populations 1.22438 0.79127 1.04723 1.01799 1.47706 1.07448 1.05299 1.71016 1.18222 0.87008 0.83439 0.77089 1.90772 1.13456 1.87146 1.50390 1.19832 0.95952 0.94618 0.99551 1.21768 0.93237 0.98216 0.98467 1.20928 1.00286 0.92155 0.98340 1.20933 0.94708 1.00716 0.98043 1.17363 0.94919 0.87282 0.94800 1.45892 1.14553 1.12284 1.36904 1.22636 0.99958 0.86545 0.99943 1.21607 0.96473 1.03314 1.07810 1.24116 0.99251 0.91415 0.98645 1.77563 0.98798 1.21966 1.12105 1.20849 0.99911 0.89885 0.98065 1.22206 0.96483 0.81787 0.97334 0.88074 1.23352 1.01608 0.98227 0.96140 1.22133 0.90478 1.00732 0.84697 1.44543 1.42701 1.37671 1.08007 1.19071 1.14804 1.08324 0.92820 0.90513 1.24767 0.99399 0.99863 0.96505 1.69791 1.34040 1.41194 1.12049 0.86079 0.79285 0.81008 0.79158 1.21659 1.21661 1.20721 1.21652 0.92892 0.91442 0.94068 0.92387 0.87785 0.91433 0.83808 0.84161 0.84948 0.80507 0.82852 0.79336 0.83650 0.91991 0.90886 0.87604 0.96059 0.93723 0.94769 0.95484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 7.00 59.85 0.42 1.34 16 2 N -0.58 -9.78 2.82 -172.95 -0.49 -10.26 16 3 C 0.55 9.39 7.34 -12.32 -0.09 9.29 16 4 O -0.54 -10.79 16.31 5.32 0.09 -10.70 16 5 C -0.10 -1.33 5.19 -104.99 -0.54 -1.87 16 6 C -0.10 -1.06 7.50 -39.16 -0.29 -1.35 16 7 C -0.10 -0.83 10.02 -39.67 -0.40 -1.22 16 8 C -0.12 -1.08 9.45 -39.32 -0.37 -1.45 16 9 C 0.15 1.75 6.67 -83.64 -0.56 1.19 16 10 N -0.32 -3.75 3.80 -10.73 -0.04 -3.79 16 11 C 0.05 0.44 10.79 -17.10 -0.18 0.25 16 12 C -0.26 -2.07 10.81 -39.99 -0.43 -2.51 16 13 C 0.05 0.50 12.03 -17.33 -0.21 0.29 16 14 N -0.29 -3.69 11.87 30.64 0.36 -3.32 16 15 C -0.07 -0.93 9.25 -38.99 -0.36 -1.29 16 16 C 0.13 2.31 3.58 -66.10 -0.24 2.08 16 17 H 0.10 1.89 7.00 -51.93 -0.36 1.53 16 18 C -0.15 -2.88 6.53 -24.59 -0.16 -3.04 16 19 C 0.14 3.26 5.00 -2.53 -0.01 3.25 16 20 N -0.60 -14.70 2.97 -170.07 -0.51 -15.20 16 21 C -0.22 -5.97 10.27 -15.06 -0.15 -6.13 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -25.73 10.09 55.49 0.56 -25.17 16 25 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.13 2.65 6.24 -3.06 -0.02 2.63 16 30 H 0.06 0.77 7.03 -51.93 -0.36 0.41 16 31 H 0.10 1.93 5.20 -51.93 -0.27 1.66 16 32 H 0.07 0.87 5.54 -51.93 -0.29 0.58 16 33 H 0.14 1.41 5.59 -52.48 -0.29 1.11 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.74 6.75 -52.48 -0.35 0.39 16 36 H 0.18 0.82 7.06 -52.48 -0.37 0.45 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 2.27 7.70 -52.49 -0.40 1.87 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.11 2.76 5.87 -51.93 -0.30 2.46 16 43 H 0.02 0.49 5.54 -51.93 -0.29 0.20 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -33.13 367.96 -9.01 -42.13 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.80 Total: 3.14 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.70 Total: 1.10 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.11 Total: -57.75 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.13 -9.01 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033505692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.833 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds