Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00059 * 2 1 4 4 O 1.21552 * 120.00393 * 184.52553 * 3 2 1 5 5 C 1.47860 * 120.00004 * 4.52453 * 3 2 1 6 6 C 1.39615 * 120.11255 * 319.34528 * 5 3 2 7 7 C 1.37985 * 119.98753 * 180.02562 * 6 5 3 8 8 C 1.38256 * 120.21705 * 359.97438 * 7 6 5 9 9 C 1.38927 * 120.22719 * 0.02636 * 8 7 6 10 10 N 1.40206 * 119.99413 * 179.97438 * 9 8 7 11 11 C 1.35223 * 126.05730 * 4.99536 * 10 9 8 12 12 C 1.35318 * 107.71707 * 180.02562 * 11 10 9 13 13 C 1.39919 * 107.93143 * 359.97438 * 12 11 10 14 14 N 1.30880 * 108.24113 * 0.02562 * 13 12 11 15 15 C 1.38591 * 120.00724 * 0.22804 * 9 8 7 16 16 C 1.46496 * 119.99902 * 180.02562 * 2 1 3 17 17 H 1.09002 * 110.64502 * 178.30971 * 16 2 1 18 18 C 1.55157 * 110.72241 * 54.97490 * 16 2 1 19 19 C 1.54902 * 101.58263 * 277.14137 * 18 16 2 20 20 N 1.47431 * 104.83280 * 322.98511 * 19 18 16 21 21 C 1.36929 * 125.65228 * 204.09392 * 20 19 18 22 22 H 1.08003 * 120.00109 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00089 * 0.04346 * 21 20 19 24 24 N 1.31621 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99989 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47301 * 90.00253 * 25 23 21 27 27 H 1.48504 * 109.46918 * 209.99858 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99820 * 25 23 21 29 29 C 1.47026 * 108.69778 * 24.13237 * 20 19 18 30 30 H 1.09001 * 109.47021 * 90.03093 * 1 2 3 31 31 H 1.08999 * 109.47035 * 210.02934 * 1 2 3 32 32 H 1.09002 * 109.47288 * 330.03414 * 1 2 3 33 33 H 1.08004 * 120.00788 * 359.97438 * 6 5 3 34 34 H 1.07992 * 119.88977 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.88869 * 180.02562 * 8 7 6 36 36 H 1.08003 * 126.14088 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.03350 * 179.74379 * 12 11 10 38 38 H 1.07993 * 125.88041 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.11085 * 179.73851 * 15 9 8 40 40 H 1.09002 * 111.00476 * 35.21604 * 18 16 2 41 41 H 1.09004 * 111.00478 * 159.06185 * 18 16 2 42 42 H 1.09007 * 110.36970 * 204.15117 * 19 18 16 43 43 H 1.08991 * 110.46544 * 81.87252 * 19 18 16 44 44 H 0.97001 * 119.99868 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.88146 * 239.52296 * 29 20 19 46 46 H 1.09004 * 109.88439 * 118.35542 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1689 -0.0831 5 6 1.4031 2.4457 0.1010 6 6 0.2085 2.6236 -0.5994 7 6 -0.4758 3.8179 -0.5037 8 6 0.0171 4.8411 0.2848 9 6 1.2050 4.6738 0.9856 10 7 1.7007 5.7147 1.7833 11 6 1.0806 6.8900 2.0340 12 6 1.8862 7.6163 2.8431 13 6 3.0364 6.8610 3.0963 14 7 2.9264 5.7216 2.4617 15 6 1.9027 3.4799 0.8921 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0917 -0.0306 18 6 1.7506 -2.1601 -1.1893 19 6 0.4718 -2.8219 -0.6183 20 7 0.7744 -3.0625 0.8044 21 6 0.1811 -4.0076 1.5978 22 1 0.4738 -4.1048 2.6329 23 6 -0.7963 -4.8412 1.0718 24 7 -1.1524 -4.7233 -0.1899 25 14 -1.6062 -6.1301 2.1544 26 1 -2.8063 -5.5463 2.8059 27 1 -2.0105 -7.2921 1.3227 28 1 -0.6459 -6.5767 3.1953 29 6 1.8182 -2.1187 1.2304 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3633 -0.8897 0.5143 32 1 -0.3634 0.8903 0.5133 33 1 -0.1796 1.8268 -1.2167 34 1 -1.3995 3.9540 -1.0464 35 1 -0.5230 5.7736 0.3562 36 1 0.1156 7.1943 1.6563 37 1 1.6796 8.6059 3.2229 38 1 3.8717 7.1659 3.7092 39 1 2.8284 3.3496 1.4328 40 1 1.5193 -1.5550 -2.0660 41 1 2.5076 -2.9090 -1.4223 42 1 0.2724 -3.7645 -1.1283 43 1 -0.3811 -2.1505 -0.7165 44 1 -1.8356 -5.3056 -0.5574 45 1 2.6909 -2.6667 1.5856 46 1 1.4350 -1.4745 2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033505692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 111.212282 kcal Electronic energy + Delta-G solvation = -29032.657619 eV Core-core repulsion = 25118.286463 eV Total energy + Delta-G solvation = -3914.371156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53155 -41.66253 -39.86229 -38.83570 -36.17420 -34.75834 -33.84430 -32.46713 -31.37308 -30.91818 -30.17554 -29.40479 -27.78961 -26.48042 -24.99011 -24.54752 -22.70746 -22.08817 -21.72566 -21.34921 -20.33157 -19.25231 -18.92780 -18.13231 -17.32864 -17.24658 -16.77666 -16.66184 -16.29529 -15.91797 -15.85000 -15.60903 -15.26734 -14.83456 -14.52034 -14.48739 -14.25505 -13.94302 -13.87354 -13.66511 -13.59944 -13.37759 -13.27734 -12.96273 -12.79123 -12.75246 -12.57867 -12.45486 -12.04955 -11.97781 -11.82399 -11.69389 -11.44958 -11.37605 -10.97168 -10.68212 -10.19662 -10.14530 -9.74247 -9.11351 -8.87951 -7.76373 -5.20299 -0.35705 -0.06583 1.10099 1.32863 1.48431 1.49236 1.57847 1.60584 1.84754 1.87542 2.49847 2.65002 3.22538 3.33805 3.56202 3.68129 3.74432 3.83623 3.90579 3.93861 4.03262 4.04635 4.21083 4.22863 4.29031 4.36020 4.58266 4.60390 4.64311 4.68351 4.73755 4.78810 4.84510 4.88114 5.00477 5.03708 5.05503 5.11093 5.17523 5.24167 5.42691 5.49747 5.57354 5.66201 5.69647 5.83058 6.15740 6.28799 6.32522 6.62293 6.94580 7.12537 7.77008 8.41037 9.24666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002403 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.055958 B =11648.880055 C =11789.569974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.584 5.584 3 C 0.554 3.446 4 O -0.581 6.581 5 C -0.116 4.116 6 C -0.099 4.099 7 C -0.081 4.081 8 C -0.106 4.106 9 C 0.138 3.862 10 N -0.339 5.339 11 C 0.051 3.949 12 C -0.265 4.265 13 C 0.049 3.951 14 N -0.349 5.349 15 C -0.092 4.092 16 C 0.136 3.864 17 H 0.099 0.901 18 C -0.138 4.138 19 C 0.151 3.849 20 N -0.617 5.617 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.058 4.058 24 N -0.942 5.942 25 Si 0.976 3.024 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.276 1.276 29 C 0.128 3.872 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.175 0.825 36 H 0.219 0.781 37 H 0.185 0.815 38 H 0.213 0.787 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.021 0.979 44 H 0.248 0.752 45 H 0.031 0.969 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 26.271 -0.613 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.314 5.314 3 C 0.344 3.656 4 O -0.462 6.462 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.127 4.127 9 C 0.046 3.954 10 N -0.115 5.115 11 C -0.090 4.090 12 C -0.292 4.292 13 C -0.138 4.138 14 N -0.168 5.168 15 C -0.113 4.113 16 C 0.031 3.969 17 H 0.117 0.883 18 C -0.177 4.177 19 C 0.027 3.973 20 N -0.344 5.344 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.251 4.251 24 N -0.591 5.591 25 Si 0.805 3.195 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.201 1.201 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.202 0.798 35 H 0.192 0.808 36 H 0.236 0.764 37 H 0.202 0.798 38 H 0.229 0.771 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.008 24.925 -0.939 24.963 hybrid contribution -0.213 -0.465 1.016 1.137 sum -1.221 24.460 0.077 24.491 Atomic orbital electron populations 1.22451 0.77831 1.04075 1.03015 1.47714 1.08136 1.04654 1.70938 1.18753 0.86684 0.84386 0.75768 1.90735 1.15400 1.87812 1.52252 1.19578 0.97548 0.92974 1.01851 1.21946 0.92017 0.99890 0.97924 1.21428 1.00865 0.90450 0.97144 1.21439 0.93021 1.02336 0.95885 1.17617 0.95785 0.86653 0.95324 1.46023 1.14717 1.13262 1.37497 1.23429 1.01208 0.85111 0.99253 1.22060 0.95487 1.04352 1.07350 1.24715 1.00541 0.90745 0.97753 1.77531 1.00718 1.24206 1.14350 1.20632 0.99676 0.91673 0.99365 1.21937 0.96606 0.82402 0.95908 0.88300 1.23202 0.99612 0.98193 0.96701 1.21938 0.92283 0.99308 0.83788 1.44723 1.43169 1.37825 1.08694 1.19341 1.15177 1.09072 0.93188 0.90819 1.25496 1.00101 1.01690 0.97781 1.70011 1.34232 1.41720 1.13166 0.85119 0.78314 0.78466 0.77619 1.21246 1.21905 1.20139 1.21675 0.91871 0.91152 0.95105 0.90167 0.91304 0.89068 0.82662 0.79767 0.80755 0.76420 0.79759 0.77085 0.87149 0.89750 0.90750 0.90981 0.96111 0.94186 0.95083 0.96076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.98 7.00 127.77 0.89 2.88 16 2 N -0.58 -19.70 2.82 -819.36 -2.31 -22.01 16 3 C 0.55 19.27 7.34 86.79 0.64 19.91 16 4 O -0.58 -24.47 16.31 -3.88 -0.06 -24.53 16 5 C -0.12 -3.21 5.19 -20.10 -0.10 -3.32 16 6 C -0.10 -1.87 7.50 22.54 0.17 -1.70 16 7 C -0.08 -0.97 10.02 22.21 0.22 -0.75 16 8 C -0.11 -1.41 9.45 22.44 0.21 -1.20 16 9 C 0.14 3.10 6.67 38.05 0.25 3.36 16 10 N -0.34 -7.58 3.80 -187.86 -0.71 -8.29 16 11 C 0.05 0.70 10.79 83.50 0.90 1.61 16 12 C -0.26 -3.46 10.81 22.00 0.24 -3.23 16 13 C 0.05 0.89 12.03 85.24 1.03 1.91 16 14 N -0.35 -9.26 11.87 -56.97 -0.68 -9.93 16 15 C -0.09 -2.68 9.25 22.65 0.21 -2.47 16 16 C 0.14 5.11 3.58 46.18 0.17 5.27 16 17 H 0.10 3.81 7.00 -2.39 -0.02 3.80 16 18 C -0.14 -5.15 6.53 31.98 0.21 -4.95 16 19 C 0.15 6.96 5.00 86.85 0.43 7.40 16 20 N -0.62 -30.86 2.97 -691.99 -2.05 -32.92 16 21 C -0.24 -13.12 10.27 84.03 0.86 -12.25 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 24 N -0.94 -53.41 10.09 21.65 0.22 -53.19 16 25 Si 0.98 44.67 29.55 68.60 2.03 46.69 16 26 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 C 0.13 5.55 6.24 86.73 0.54 6.09 16 30 H 0.08 1.98 7.03 -2.39 -0.02 1.96 16 31 H 0.07 2.56 5.20 -2.39 -0.01 2.55 16 32 H 0.09 2.21 5.54 -2.39 -0.01 2.20 16 33 H 0.16 2.53 5.59 -2.91 -0.02 2.52 16 34 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.18 0.82 6.75 -2.91 -0.02 0.80 16 36 H 0.22 0.85 7.06 -2.91 -0.02 0.83 16 37 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.11 3.88 7.70 -2.91 -0.02 3.85 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 42 H 0.07 3.86 5.87 -2.38 -0.01 3.84 16 43 H 0.02 0.96 5.54 -2.39 -0.01 0.95 16 44 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.02 0.94 8.04 -2.38 -0.02 0.92 16 Total: -1.00 -77.43 367.96 4.78 -72.65 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.01 Total: 15.67 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.34 Total: 15.86 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.54 Total: -126.35 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.43 4.78 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033505692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.864 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds