Wall clock time and date at job start Sat Apr 11 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99747 * 2 1 4 4 O 1.21576 * 119.99483 * 185.23317 * 3 2 1 5 5 C 1.47640 * 120.00319 * 5.23725 * 3 2 1 6 6 C 1.40252 * 120.49350 * 34.39289 * 5 3 2 7 7 C 1.38003 * 118.35933 * 179.97438 * 6 5 3 8 8 C 1.39176 * 119.25385 * 0.02562 * 7 6 5 9 9 N 1.39420 * 119.53285 * 180.02562 * 8 7 6 10 10 C 1.36713 * 125.68054 * 359.69006 * 9 8 7 11 11 C 1.34776 * 108.18297 * 179.88851 * 10 9 8 12 12 C 1.41020 * 107.50015 * 0.37194 * 11 10 9 13 13 C 1.34771 * 107.50084 * 359.76348 * 12 11 10 14 14 N 1.32452 * 120.94534 * 359.97438 * 8 7 6 15 15 C 1.31640 * 121.79049 * 359.70109 * 14 8 7 16 16 C 1.46500 * 120.00036 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88376 * 176.12000 * 16 2 1 18 18 C 1.55161 * 111.00292 * 300.00138 * 16 2 1 19 19 C 1.54321 * 102.94242 * 82.57280 * 18 16 2 20 20 N 1.47024 * 107.27383 * 22.19078 * 19 18 16 21 21 C 1.36933 * 125.64940 * 181.01898 * 20 19 18 22 22 H 1.07996 * 119.99951 * 176.64993 * 21 20 19 23 23 C 1.38809 * 119.99739 * 356.65763 * 21 20 19 24 24 N 1.31623 * 119.99777 * 217.21074 * 23 21 20 25 25 Si 1.86807 * 120.00425 * 37.49125 * 23 21 20 26 26 H 1.48498 * 109.46771 * 267.60739 * 25 23 21 27 27 H 1.48499 * 109.46610 * 27.60297 * 25 23 21 28 28 H 1.48498 * 109.47294 * 147.60489 * 25 23 21 29 29 C 1.47424 * 108.69900 * 1.29104 * 20 19 18 30 30 H 1.08996 * 109.47144 * 273.43313 * 1 2 3 31 31 H 1.09006 * 109.46926 * 33.43423 * 1 2 3 32 32 H 1.08998 * 109.47144 * 153.43045 * 1 2 3 33 33 H 1.08000 * 120.82291 * 0.02864 * 6 5 3 34 34 H 1.07999 * 120.37294 * 179.97438 * 7 6 5 35 35 H 1.08000 * 125.91433 * 0.02562 * 10 9 8 36 36 H 1.07998 * 126.25100 * 180.12266 * 11 10 9 37 37 H 1.08003 * 126.25027 * 179.74974 * 12 11 10 38 38 H 1.08003 * 125.90464 * 179.97438 * 13 12 11 39 39 H 1.08007 * 119.67863 * 180.31563 * 15 14 8 40 40 H 1.09003 * 110.71537 * 324.20735 * 18 16 2 41 41 H 1.09002 * 110.87089 * 201.01043 * 18 16 2 42 42 H 1.09000 * 109.87790 * 262.77263 * 19 18 16 43 43 H 1.09002 * 109.88182 * 141.61382 * 19 18 16 44 44 H 0.97003 * 119.99998 * 5.28984 * 24 23 21 45 45 H 1.08999 * 110.37020 * 94.48118 * 29 20 19 46 46 H 1.09007 * 110.36159 * 216.80610 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1694 -0.0960 5 6 1.4053 2.4432 0.1167 6 6 0.2438 2.5274 0.8983 7 6 -0.4068 3.7420 0.9769 8 6 0.1061 4.8344 0.2836 9 7 -0.5462 6.0642 0.3593 10 6 -1.6872 6.3194 1.0678 11 6 -2.0069 7.6175 0.8969 12 6 -1.0357 8.1850 0.0465 13 6 -0.1548 7.2145 -0.2672 14 7 1.2056 4.7226 -0.4465 15 6 1.8607 3.5849 -0.5439 16 6 2.1975 -1.2687 -0.0006 17 1 3.2717 -1.0972 -0.0694 18 6 1.8483 -2.1130 1.2535 19 6 0.5311 -2.8068 0.8472 20 7 0.4793 -2.8192 -0.6220 21 6 -0.5404 -3.3293 -1.3804 22 1 -0.5091 -3.2419 -2.4563 23 6 -1.6144 -3.9586 -0.7661 24 7 -2.1676 -5.0132 -1.3266 25 14 -2.2797 -3.3041 0.8521 26 1 -1.6113 -4.0012 1.9802 27 1 -2.0129 -1.8461 0.9434 28 1 -3.7435 -3.5447 0.9191 29 6 1.7100 -2.1973 -1.1436 30 1 -0.3633 0.0615 1.0258 31 1 -0.3633 0.8577 -0.5663 32 1 -0.3633 -0.9191 -0.4596 33 1 -0.1318 1.6634 1.4263 34 1 -1.3042 3.8434 1.5691 35 1 -2.2361 5.6050 1.6635 36 1 -2.8546 8.1286 1.3288 37 1 -1.0038 9.2102 -0.2918 38 1 0.7105 7.3262 -0.9038 39 1 2.7567 3.5335 -1.1448 40 1 1.6944 -1.4704 2.1204 41 1 2.6262 -2.8497 1.4546 42 1 -0.3183 -2.2505 1.2435 43 1 0.5176 -3.8284 1.2273 44 1 -1.7781 -5.3970 -2.1279 45 1 2.4577 -2.9600 -1.3610 46 1 1.4906 -1.6141 -2.0380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:17 Heat of formation + Delta-G solvation = 120.488866 kcal Electronic energy + Delta-G solvation = -29352.791197 eV Core-core repulsion = 25438.822304 eV Total energy + Delta-G solvation = -3913.968893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06505 -40.73227 -39.41588 -37.75245 -34.83352 -33.66703 -33.09547 -32.30822 -30.17500 -29.52631 -29.20270 -28.48589 -26.55923 -24.87001 -24.10539 -23.69690 -21.64968 -20.79867 -20.58790 -20.40157 -19.26642 -18.88468 -17.59215 -17.48181 -16.64316 -16.41232 -15.74315 -15.59573 -15.34126 -15.01221 -14.66615 -14.35232 -14.05068 -13.82231 -13.78662 -13.53957 -13.39910 -13.13415 -12.87169 -12.75346 -12.62840 -12.43793 -12.35078 -11.90144 -11.64034 -11.29365 -11.10565 -11.03329 -10.88950 -10.41183 -10.33539 -10.27066 -10.20281 -9.90030 -9.68769 -9.39473 -8.68568 -8.58075 -8.54341 -8.33686 -7.18952 -6.53020 -3.23748 0.12543 0.76893 1.91842 2.23183 2.68413 2.71670 2.99386 3.34012 3.36815 3.48356 3.55478 3.88934 4.21438 4.33892 4.45692 4.52158 4.56074 4.79034 4.81880 4.98267 5.02748 5.11304 5.14729 5.17786 5.30129 5.32922 5.38292 5.42472 5.47976 5.58873 5.69375 5.75171 5.89327 5.90081 5.93299 6.03971 6.10387 6.15855 6.36146 6.43521 6.48838 6.53266 6.67322 6.69388 6.77546 6.99970 7.40093 7.48353 7.60442 8.10138 8.21988 8.89307 9.48461 10.14978 10.94427 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.002927 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.772493 B = 9564.767195 C =10764.753484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.582 5.582 3 C 0.563 3.437 4 O -0.541 6.541 5 C -0.194 4.194 6 C -0.017 4.017 7 C -0.194 4.194 8 C 0.367 3.633 9 N -0.397 5.397 10 C -0.015 4.015 11 C -0.180 4.180 12 C -0.197 4.197 13 C 0.013 3.987 14 N -0.508 5.508 15 C 0.192 3.808 16 C 0.120 3.880 17 H 0.109 0.891 18 C -0.138 4.138 19 C 0.109 3.891 20 N -0.605 5.605 21 C -0.353 4.353 22 H 0.080 0.920 23 C -0.004 4.004 24 N -0.893 5.893 25 Si 1.037 2.963 26 H -0.294 1.294 27 H -0.288 1.288 28 H -0.298 1.298 29 C 0.129 3.871 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.268 0.732 45 H 0.041 0.959 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 20.440 6.214 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.313 5.313 3 C 0.350 3.650 4 O -0.420 6.420 5 C -0.200 4.200 6 C -0.043 4.043 7 C -0.216 4.216 8 C 0.139 3.861 9 N -0.072 5.072 10 C -0.140 4.140 11 C -0.204 4.204 12 C -0.221 4.221 13 C -0.112 4.112 14 N -0.220 5.220 15 C 0.033 3.967 16 C 0.016 3.984 17 H 0.126 0.874 18 C -0.177 4.177 19 C -0.016 4.016 20 N -0.333 5.333 21 C -0.479 4.479 22 H 0.098 0.902 23 C -0.208 4.208 24 N -0.531 5.531 25 Si 0.869 3.131 26 H -0.222 1.222 27 H -0.216 1.216 28 H -0.226 1.226 29 C 0.002 3.998 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.188 0.812 39 H 0.193 0.807 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.261 20.643 6.730 21.956 hybrid contribution 0.649 -0.441 -0.584 0.978 sum 3.910 20.202 6.146 21.475 Atomic orbital electron populations 1.22667 0.78721 1.06746 1.01228 1.47611 1.07566 1.05071 1.71041 1.17957 0.86850 0.83148 0.76996 1.90772 1.13355 1.87158 1.50678 1.20955 0.98586 0.96402 1.04075 1.22110 0.91148 0.97664 0.93341 1.21500 1.03693 0.92104 1.04282 1.18452 0.90212 0.84833 0.92605 1.41493 1.20974 1.06442 1.38317 1.21954 0.90396 0.98511 1.03164 1.21070 1.01898 0.93681 1.03758 1.21095 0.97387 0.99483 1.04120 1.22126 1.02484 0.84313 1.02311 1.67082 1.07431 1.27988 1.19462 1.22702 0.96294 0.84647 0.93091 1.22410 0.96798 0.82262 0.96896 0.87357 1.22945 0.98884 0.98783 0.97106 1.21692 0.94960 0.98562 0.86362 1.44849 1.17814 1.70668 0.99954 1.19833 1.01153 1.35915 0.90956 0.90201 1.25533 0.96865 0.94652 1.03713 1.70873 1.46230 1.15000 1.20959 0.84326 0.76059 0.75697 0.76987 1.22195 1.21590 1.22585 1.21944 0.89838 0.93345 0.94631 0.93030 0.92050 0.85456 0.82393 0.83462 0.81368 0.83776 0.83924 0.81228 0.80687 0.91245 0.90083 0.94898 0.94159 0.92188 0.94163 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 7.13 59.85 0.43 1.16 16 2 N -0.58 -8.93 2.91 -172.53 -0.50 -9.43 16 3 C 0.56 8.44 7.39 -12.42 -0.09 8.35 16 4 O -0.54 -9.39 16.21 5.30 0.09 -9.31 16 5 C -0.19 -2.45 5.20 -104.82 -0.55 -2.99 16 6 C -0.02 -0.18 7.86 -38.91 -0.31 -0.49 16 7 C -0.19 -1.92 9.46 -39.32 -0.37 -2.29 16 8 C 0.37 4.25 7.48 -154.55 -1.16 3.10 16 9 N -0.40 -4.34 2.96 -62.64 -0.19 -4.53 16 10 C -0.02 -0.14 10.71 -16.60 -0.18 -0.32 16 11 C -0.18 -1.58 10.86 -39.76 -0.43 -2.01 16 12 C -0.20 -1.82 10.86 -39.76 -0.43 -2.25 16 13 C 0.01 0.14 10.99 -16.61 -0.18 -0.04 16 14 N -0.51 -6.31 9.80 -12.00 -0.12 -6.42 16 15 C 0.19 2.33 10.77 -17.15 -0.18 2.15 16 16 C 0.12 1.93 3.67 -65.66 -0.24 1.69 16 17 H 0.11 1.70 7.02 -51.93 -0.36 1.33 16 18 C -0.14 -2.16 6.48 -24.90 -0.16 -2.32 16 19 C 0.11 2.15 3.92 -3.06 -0.01 2.14 16 20 N -0.60 -13.39 1.84 -169.93 -0.31 -13.71 16 21 C -0.35 -9.27 9.86 -15.06 -0.15 -9.42 16 22 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 23 C 0.00 -0.11 5.39 -17.43 -0.09 -0.21 16 24 N -0.89 -26.37 13.70 55.49 0.76 -25.61 16 25 Si 1.04 24.08 24.87 -169.99 -4.23 19.85 16 26 H -0.29 -6.65 6.92 56.52 0.39 -6.26 16 27 H -0.29 -5.93 6.23 56.52 0.35 -5.57 16 28 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 29 C 0.13 2.43 6.45 -2.41 -0.02 2.41 16 30 H 0.05 0.69 6.41 -51.93 -0.33 0.36 16 31 H 0.06 0.83 6.33 -51.93 -0.33 0.50 16 32 H 0.13 2.42 4.35 -51.93 -0.23 2.19 16 33 H 0.16 1.52 5.27 -52.49 -0.28 1.25 16 34 H 0.15 1.05 6.66 -52.49 -0.35 0.70 16 35 H 0.17 1.06 6.96 -52.49 -0.37 0.69 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.17 1.62 8.03 -52.48 -0.42 1.19 16 39 H 0.18 1.92 7.99 -52.48 -0.42 1.50 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.67 3.33 -51.93 -0.17 0.49 16 43 H 0.04 0.86 7.52 -51.93 -0.39 0.47 16 44 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -31.37 362.37 -8.98 -40.36 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.82 Total: 4.67 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -4.12 Total: -1.33 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.36 Total: -59.70 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.23 Total: 19.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.37 -8.98 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.846 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds