Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99747 * 2 1 4 4 O 1.21576 * 119.99483 * 185.23317 * 3 2 1 5 5 C 1.47640 * 120.00319 * 5.23725 * 3 2 1 6 6 C 1.40252 * 120.49350 * 34.39289 * 5 3 2 7 7 C 1.38003 * 118.35933 * 179.97438 * 6 5 3 8 8 C 1.39176 * 119.25385 * 0.02562 * 7 6 5 9 9 N 1.39420 * 119.53285 * 180.02562 * 8 7 6 10 10 C 1.36713 * 125.68054 * 359.69006 * 9 8 7 11 11 C 1.34776 * 108.18297 * 179.88851 * 10 9 8 12 12 C 1.41020 * 107.50015 * 0.37194 * 11 10 9 13 13 C 1.34771 * 107.50084 * 359.76348 * 12 11 10 14 14 N 1.32452 * 120.94534 * 359.97438 * 8 7 6 15 15 C 1.31640 * 121.79049 * 359.70109 * 14 8 7 16 16 C 1.46500 * 120.00036 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.88376 * 176.12000 * 16 2 1 18 18 C 1.55161 * 111.00292 * 300.00138 * 16 2 1 19 19 C 1.54321 * 102.94242 * 82.57280 * 18 16 2 20 20 N 1.47024 * 107.27383 * 22.19078 * 19 18 16 21 21 C 1.36933 * 125.64940 * 181.01898 * 20 19 18 22 22 H 1.07996 * 119.99951 * 176.64993 * 21 20 19 23 23 C 1.38809 * 119.99739 * 356.65763 * 21 20 19 24 24 N 1.31623 * 119.99777 * 217.21074 * 23 21 20 25 25 Si 1.86807 * 120.00425 * 37.49125 * 23 21 20 26 26 H 1.48498 * 109.46771 * 267.60739 * 25 23 21 27 27 H 1.48499 * 109.46610 * 27.60297 * 25 23 21 28 28 H 1.48498 * 109.47294 * 147.60489 * 25 23 21 29 29 C 1.47424 * 108.69900 * 1.29104 * 20 19 18 30 30 H 1.08996 * 109.47144 * 273.43313 * 1 2 3 31 31 H 1.09006 * 109.46926 * 33.43423 * 1 2 3 32 32 H 1.08998 * 109.47144 * 153.43045 * 1 2 3 33 33 H 1.08000 * 120.82291 * 0.02864 * 6 5 3 34 34 H 1.07999 * 120.37294 * 179.97438 * 7 6 5 35 35 H 1.08000 * 125.91433 * 0.02562 * 10 9 8 36 36 H 1.07998 * 126.25100 * 180.12266 * 11 10 9 37 37 H 1.08003 * 126.25027 * 179.74974 * 12 11 10 38 38 H 1.08003 * 125.90464 * 179.97438 * 13 12 11 39 39 H 1.08007 * 119.67863 * 180.31563 * 15 14 8 40 40 H 1.09003 * 110.71537 * 324.20735 * 18 16 2 41 41 H 1.09002 * 110.87089 * 201.01043 * 18 16 2 42 42 H 1.09000 * 109.87790 * 262.77263 * 19 18 16 43 43 H 1.09002 * 109.88182 * 141.61382 * 19 18 16 44 44 H 0.97003 * 119.99998 * 5.28984 * 24 23 21 45 45 H 1.08999 * 110.37020 * 94.48118 * 29 20 19 46 46 H 1.09007 * 110.36159 * 216.80610 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1694 -0.0960 5 6 1.4053 2.4432 0.1167 6 6 0.2438 2.5274 0.8983 7 6 -0.4068 3.7420 0.9769 8 6 0.1061 4.8344 0.2836 9 7 -0.5462 6.0642 0.3593 10 6 -1.6872 6.3194 1.0678 11 6 -2.0069 7.6175 0.8969 12 6 -1.0357 8.1850 0.0465 13 6 -0.1548 7.2145 -0.2672 14 7 1.2056 4.7226 -0.4465 15 6 1.8607 3.5849 -0.5439 16 6 2.1975 -1.2687 -0.0006 17 1 3.2717 -1.0972 -0.0694 18 6 1.8483 -2.1130 1.2535 19 6 0.5311 -2.8068 0.8472 20 7 0.4793 -2.8192 -0.6220 21 6 -0.5404 -3.3293 -1.3804 22 1 -0.5091 -3.2419 -2.4563 23 6 -1.6144 -3.9586 -0.7661 24 7 -2.1676 -5.0132 -1.3266 25 14 -2.2797 -3.3041 0.8521 26 1 -1.6113 -4.0012 1.9802 27 1 -2.0129 -1.8461 0.9434 28 1 -3.7435 -3.5447 0.9191 29 6 1.7100 -2.1973 -1.1436 30 1 -0.3633 0.0615 1.0258 31 1 -0.3633 0.8577 -0.5663 32 1 -0.3633 -0.9191 -0.4596 33 1 -0.1318 1.6634 1.4263 34 1 -1.3042 3.8434 1.5691 35 1 -2.2361 5.6050 1.6635 36 1 -2.8546 8.1286 1.3288 37 1 -1.0038 9.2102 -0.2918 38 1 0.7105 7.3262 -0.9038 39 1 2.7567 3.5335 -1.1448 40 1 1.6944 -1.4704 2.1204 41 1 2.6262 -2.8497 1.4546 42 1 -0.3183 -2.2505 1.2435 43 1 0.5176 -3.8284 1.2273 44 1 -1.7781 -5.3970 -2.1279 45 1 2.4577 -2.9600 -1.3610 46 1 1.4906 -1.6141 -2.0380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033515942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 103.265713 kcal Electronic energy + Delta-G solvation = -29353.538049 eV Core-core repulsion = 25438.822304 eV Total energy + Delta-G solvation = -3914.715745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81732 -41.75985 -40.47403 -39.11522 -36.15812 -34.81852 -34.18383 -33.68731 -31.56133 -30.63110 -29.93332 -29.84297 -27.81112 -26.13099 -25.17113 -24.90791 -22.79397 -22.34009 -21.48582 -21.14934 -20.46600 -19.64812 -19.47601 -18.61100 -17.82826 -17.45649 -16.88060 -16.61699 -16.41892 -16.07079 -16.03216 -15.63788 -15.19954 -14.98061 -14.84787 -14.61434 -14.48788 -14.38652 -14.10198 -13.79221 -13.61921 -13.34871 -13.26463 -13.13362 -13.00791 -12.96143 -12.64248 -12.46924 -12.38668 -11.90165 -11.72639 -11.37860 -11.18856 -11.09525 -10.99764 -10.76861 -10.48348 -9.84880 -9.33888 -9.26788 -9.03403 -8.67510 -5.29837 -0.73550 -0.03755 1.11458 1.46098 1.48553 1.55119 1.66466 1.73165 1.88103 2.02425 2.60806 2.61558 2.92116 3.07492 3.29514 3.42118 3.50754 3.61733 3.70947 3.78767 3.82824 4.15547 4.16943 4.22414 4.27024 4.36884 4.38402 4.45150 4.53599 4.56861 4.65067 4.69449 4.78410 4.81593 4.85158 4.90992 4.96323 5.12219 5.16736 5.23462 5.24030 5.29799 5.50533 5.64732 5.83308 6.01492 6.10560 6.25801 6.27936 6.63923 6.84310 6.94183 7.52124 8.18402 8.80933 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.002927 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.772493 B = 9564.767195 C =10764.753484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.584 5.584 3 C 0.569 3.431 4 O -0.569 6.569 5 C -0.207 4.207 6 C -0.010 4.010 7 C -0.185 4.185 8 C 0.357 3.643 9 N -0.407 5.407 10 C -0.020 4.020 11 C -0.188 4.188 12 C -0.197 4.197 13 C -0.017 4.017 14 N -0.526 5.526 15 C 0.187 3.813 16 C 0.131 3.869 17 H 0.117 0.883 18 C -0.124 4.124 19 C 0.104 3.896 20 N -0.617 5.617 21 C -0.335 4.335 22 H 0.044 0.956 23 C -0.062 4.062 24 N -0.936 5.936 25 Si 1.081 2.919 26 H -0.282 1.282 27 H -0.243 1.243 28 H -0.311 1.311 29 C 0.127 3.873 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.023 0.977 44 H 0.252 0.748 45 H 0.042 0.958 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 22.814 9.151 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.314 5.314 3 C 0.358 3.642 4 O -0.449 6.449 5 C -0.214 4.214 6 C -0.036 4.036 7 C -0.206 4.206 8 C 0.129 3.871 9 N -0.083 5.083 10 C -0.144 4.144 11 C -0.212 4.212 12 C -0.221 4.221 13 C -0.141 4.141 14 N -0.238 5.238 15 C 0.028 3.972 16 C 0.027 3.973 17 H 0.134 0.866 18 C -0.163 4.163 19 C -0.020 4.020 20 N -0.345 5.345 21 C -0.463 4.463 22 H 0.062 0.938 23 C -0.258 4.258 24 N -0.577 5.577 25 Si 0.907 3.093 26 H -0.209 1.209 27 H -0.168 1.168 28 H -0.240 1.240 29 C 0.001 3.999 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.215 0.785 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.817 23.073 9.672 25.176 hybrid contribution 0.830 -1.080 -1.631 2.125 sum 3.647 21.992 8.042 23.699 Atomic orbital electron populations 1.22628 0.78415 1.05438 1.02700 1.47615 1.07722 1.04896 1.71186 1.18196 0.86520 0.83571 0.75943 1.90757 1.14686 1.87549 1.51947 1.20778 0.99694 0.95152 1.05732 1.22265 0.90175 0.98527 0.92589 1.21804 1.04274 0.90944 1.03587 1.18800 0.90070 0.85720 0.92515 1.41679 1.21584 1.06226 1.38846 1.22554 0.89746 0.99385 1.02751 1.21454 1.02371 0.93865 1.03531 1.21436 0.96990 1.00069 1.03565 1.22308 1.03350 0.84982 1.03508 1.67070 1.08286 1.28095 1.20346 1.22741 0.96490 0.84690 0.93298 1.22231 0.97142 0.82217 0.95705 0.86567 1.22922 0.96947 0.98979 0.97420 1.21810 0.97598 0.98165 0.84393 1.44805 1.17597 1.70829 1.01309 1.19631 1.02238 1.34539 0.89873 0.93753 1.26822 0.97595 0.94361 1.07050 1.71009 1.47670 1.17361 1.21635 0.83824 0.74493 0.77793 0.73228 1.20897 1.16797 1.24021 1.22018 0.88621 0.93780 0.95463 0.90409 0.90634 0.89083 0.80715 0.80206 0.78506 0.81554 0.82321 0.81522 0.80590 0.88529 0.88377 0.94252 0.95922 0.93960 0.94050 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.36 7.13 127.77 0.91 2.27 16 2 N -0.58 -16.37 2.91 -818.02 -2.38 -18.75 16 3 C 0.57 15.85 7.39 86.73 0.64 16.49 16 4 O -0.57 -18.95 16.21 -3.95 -0.06 -19.01 16 5 C -0.21 -4.77 5.20 -19.99 -0.10 -4.88 16 6 C -0.01 -0.18 7.86 22.70 0.18 0.00 16 7 C -0.18 -2.96 9.46 22.44 0.21 -2.75 16 8 C 0.36 7.49 7.48 132.91 0.99 8.49 16 9 N -0.41 -8.06 2.96 -352.11 -1.04 -9.10 16 10 C -0.02 -0.31 10.71 83.14 0.89 0.58 16 11 C -0.19 -2.77 10.86 22.16 0.24 -2.53 16 12 C -0.20 -3.28 10.86 22.16 0.24 -3.04 16 13 C -0.02 -0.33 10.99 83.14 0.91 0.58 16 14 N -0.53 -12.51 9.80 -191.87 -1.88 -14.39 16 15 C 0.19 4.36 10.77 85.04 0.92 5.27 16 16 C 0.13 3.92 3.67 46.46 0.17 4.09 16 17 H 0.12 3.37 7.02 -2.39 -0.02 3.35 16 18 C -0.12 -3.42 6.48 31.78 0.21 -3.21 16 19 C 0.10 3.87 3.92 86.73 0.34 4.21 16 20 N -0.62 -27.04 1.84 -691.55 -1.27 -28.31 16 21 C -0.34 -18.03 9.86 84.03 0.83 -17.20 16 22 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 23 C -0.06 -3.42 5.39 84.86 0.46 -2.97 16 24 N -0.94 -57.32 13.70 21.65 0.30 -57.02 16 25 Si 1.08 47.68 24.87 68.60 1.71 49.38 16 26 H -0.28 -11.85 6.92 99.48 0.69 -11.16 16 27 H -0.24 -8.82 6.23 99.48 0.62 -8.20 16 28 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 29 C 0.13 4.72 6.45 86.93 0.56 5.28 16 30 H 0.08 1.68 6.41 -2.39 -0.02 1.67 16 31 H 0.08 1.81 6.33 -2.38 -0.02 1.79 16 32 H 0.09 3.25 4.35 -2.39 -0.01 3.24 16 33 H 0.18 2.47 5.27 -2.91 -0.02 2.45 16 34 H 0.18 1.62 6.66 -2.91 -0.02 1.60 16 35 H 0.20 1.57 6.96 -2.91 -0.02 1.55 16 36 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.17 3.20 8.03 -2.91 -0.02 3.18 16 39 H 0.18 3.85 7.99 -2.91 -0.02 3.83 16 40 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.43 3.33 -2.39 -0.01 1.42 16 43 H 0.02 0.93 7.52 -2.39 -0.02 0.91 16 44 H 0.25 15.60 8.73 -92.71 -0.81 14.79 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.02 362.37 4.83 -66.19 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.87 Total: 20.32 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 8.60 Total: 10.69 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.28 Total: -127.57 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.06 Total: -19.01 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.71 Total: 49.38 kcal Total: -71.02 4.83 -66.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.454 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds