Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99826 * 2 1 4 4 O 1.21586 * 120.00284 * 184.88719 * 3 2 1 5 5 C 1.47647 * 120.00289 * 4.88442 * 3 2 1 6 6 C 1.40248 * 120.49651 * 201.16666 * 5 3 2 7 7 C 1.38003 * 118.35631 * 179.75286 * 6 5 3 8 8 C 1.39179 * 119.25733 * 0.52787 * 7 6 5 9 9 N 1.39411 * 119.52873 * 179.74260 * 8 7 6 10 10 C 1.36715 * 125.69413 * 359.66135 * 9 8 7 11 11 C 1.34769 * 108.19001 * 179.87122 * 10 9 8 12 12 C 1.41028 * 107.49991 * 0.38973 * 11 10 9 13 13 C 1.34771 * 107.49912 * 359.75748 * 12 11 10 14 14 N 1.32453 * 120.93978 * 359.71061 * 8 7 6 15 15 C 1.31635 * 121.79507 * 0.03236 * 14 8 7 16 16 C 1.46492 * 120.00187 * 179.97438 * 2 1 3 17 17 H 1.09007 * 110.64306 * 178.31665 * 16 2 1 18 18 C 1.55161 * 110.87266 * 55.06609 * 16 2 1 19 19 C 1.55130 * 101.48477 * 205.89718 * 18 16 2 20 20 N 1.47419 * 104.72311 * 37.29812 * 19 18 16 21 21 C 1.36938 * 125.64811 * 155.81228 * 20 19 18 22 22 H 1.07995 * 119.99967 * 198.75347 * 21 20 19 23 23 C 1.38815 * 119.99845 * 18.75667 * 21 20 19 24 24 N 1.31617 * 120.00098 * 29.20151 * 23 21 20 25 25 Si 1.86800 * 119.99729 * 209.19803 * 23 21 20 26 26 H 1.48501 * 109.46929 * 179.97438 * 25 23 21 27 27 H 1.48492 * 109.47380 * 300.00170 * 25 23 21 28 28 H 1.48503 * 109.46987 * 60.00260 * 25 23 21 29 29 C 1.47023 * 108.70289 * 335.54795 * 20 19 18 30 30 H 1.08997 * 109.47498 * 264.63156 * 1 2 3 31 31 H 1.09006 * 109.47098 * 24.63472 * 1 2 3 32 32 H 1.09004 * 109.47034 * 144.62408 * 1 2 3 33 33 H 1.07998 * 120.82504 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.37080 * 180.23493 * 7 6 5 35 35 H 1.07999 * 125.90192 * 0.02562 * 10 9 8 36 36 H 1.07994 * 126.25064 * 180.14876 * 11 10 9 37 37 H 1.07994 * 126.24980 * 179.75804 * 12 11 10 38 38 H 1.07996 * 125.90289 * 179.97438 * 13 12 11 39 39 H 1.07999 * 119.68117 * 180.02562 * 15 14 8 40 40 H 1.08993 * 111.00455 * 324.14407 * 18 16 2 41 41 H 1.09000 * 110.99941 * 87.95165 * 18 16 2 42 42 H 1.09002 * 110.49821 * 278.45050 * 19 18 16 43 43 H 1.09005 * 110.33697 * 156.05780 * 19 18 16 44 44 H 0.96999 * 120.00163 * 6.35288 * 24 23 21 45 45 H 1.09003 * 109.87732 * 120.70575 * 29 20 19 46 46 H 1.08999 * 109.88267 * 241.86666 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3513 1.1692 -0.0897 5 6 1.4046 2.4436 0.1089 6 6 1.9927 3.6419 -0.3214 7 6 1.2648 4.8084 -0.2039 8 6 -0.0140 4.7601 0.3433 9 7 -0.7522 5.9359 0.4696 10 6 -0.3327 7.1844 0.1031 11 6 -1.3218 8.0579 0.3771 12 6 -2.3883 7.3276 0.9411 13 6 -2.0143 6.0336 0.9862 14 7 -0.5398 3.6127 0.7452 15 6 0.1174 2.4764 0.6468 16 6 2.1974 -1.2686 0.0006 17 1 3.2726 -1.0916 -0.0295 18 6 1.7549 -2.1630 -1.1876 19 6 2.0760 -3.5800 -0.6439 20 7 1.7366 -3.5172 0.7893 21 6 1.4058 -4.5861 1.5788 22 1 0.8880 -4.4276 2.5131 23 6 1.7362 -5.8734 1.1780 24 7 2.7950 -6.0763 0.4230 25 14 0.6780 -7.3178 1.7104 26 1 1.2399 -8.5747 1.1539 27 1 0.6588 -7.3974 3.1931 28 1 -0.7063 -7.1294 1.2068 29 6 1.8182 -2.1176 1.2322 30 1 -0.3634 -0.0961 1.0231 31 1 -0.3633 0.9342 -0.4284 32 1 -0.3633 -0.8380 -0.5950 33 1 2.9892 3.6511 -0.7377 34 1 1.6846 5.7491 -0.5286 35 1 0.6247 7.4281 -0.3330 36 1 -1.3000 9.1231 0.2010 37 1 -3.3324 7.7315 1.2756 38 1 -2.6086 5.2154 1.3653 39 1 -0.3444 1.5605 0.9849 40 1 0.6893 -2.0493 -1.3865 41 1 2.3421 -1.9459 -2.0799 42 1 3.1340 -3.8079 -0.7736 43 1 1.4617 -4.3269 -1.1468 44 1 3.3959 -5.3416 0.2228 45 1 0.8525 -1.7952 1.6216 46 1 2.5831 -2.0164 2.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 122.388095 kcal Electronic energy + Delta-G solvation = -28582.952061 eV Core-core repulsion = 24669.065525 eV Total energy + Delta-G solvation = -3913.886536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17116 -40.89200 -39.36101 -37.57997 -35.38034 -33.82249 -33.11318 -32.35851 -30.19366 -29.33912 -29.10641 -27.88366 -27.11372 -24.85138 -24.23243 -24.01198 -21.48425 -20.65087 -20.59389 -20.37217 -19.43715 -18.90887 -17.80994 -17.58127 -16.99652 -16.24917 -15.82205 -15.72421 -15.15269 -14.77321 -14.41411 -14.28071 -14.10007 -13.89513 -13.71847 -13.61234 -13.50660 -13.21681 -13.15498 -13.03879 -12.71682 -12.45173 -12.36645 -11.91541 -11.66239 -11.16137 -10.85618 -10.74739 -10.59330 -10.53682 -10.43063 -10.22856 -10.15326 -10.04510 -9.84550 -9.59342 -8.71516 -8.66377 -8.58372 -8.43437 -6.99688 -6.14703 -3.20976 -0.01319 0.66139 1.81100 2.14040 2.60634 2.68420 2.81255 3.39063 3.47785 3.51244 3.69442 3.76744 4.10521 4.22265 4.33024 4.44276 4.56075 4.68601 4.83131 4.90119 5.02673 5.05758 5.08827 5.14294 5.20218 5.24353 5.35924 5.36909 5.46289 5.47716 5.57524 5.68184 5.81065 5.82037 5.88798 5.90634 6.05123 6.27342 6.30955 6.44542 6.53211 6.58470 6.72859 6.86546 6.91032 6.96277 7.29357 7.32609 7.75331 8.00104 8.43959 8.96185 9.75716 10.30548 11.16809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.002091 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.250613 B =13385.163794 C =14165.587766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.592 5.592 3 C 0.564 3.436 4 O -0.534 6.534 5 C -0.200 4.200 6 C 0.012 3.988 7 C -0.197 4.197 8 C 0.368 3.632 9 N -0.397 5.397 10 C -0.017 4.017 11 C -0.179 4.179 12 C -0.196 4.196 13 C 0.014 3.986 14 N -0.507 5.507 15 C 0.150 3.850 16 C 0.127 3.873 17 H 0.108 0.892 18 C -0.145 4.145 19 C 0.145 3.855 20 N -0.599 5.599 21 C -0.340 4.340 22 H 0.064 0.936 23 C -0.023 4.023 24 N -0.911 5.911 25 Si 1.064 2.936 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.293 1.293 29 C 0.128 3.872 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.195 0.805 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.269 0.731 45 H 0.030 0.970 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 26.014 -3.284 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.324 5.324 3 C 0.351 3.649 4 O -0.412 6.412 5 C -0.206 4.206 6 C -0.015 4.015 7 C -0.219 4.219 8 C 0.141 3.859 9 N -0.073 5.073 10 C -0.142 4.142 11 C -0.203 4.203 12 C -0.220 4.220 13 C -0.111 4.111 14 N -0.219 5.219 15 C -0.008 4.008 16 C 0.024 3.976 17 H 0.126 0.874 18 C -0.184 4.184 19 C 0.020 3.980 20 N -0.327 5.327 21 C -0.467 4.467 22 H 0.082 0.918 23 C -0.226 4.226 24 N -0.551 5.551 25 Si 0.893 3.107 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.221 1.221 29 C 0.001 3.999 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.211 0.789 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.135 24.052 -3.100 25.579 hybrid contribution 0.962 1.731 -0.022 1.981 sum -7.173 25.783 -3.121 26.944 Atomic orbital electron populations 1.22495 0.80111 1.03842 1.02406 1.47688 1.06879 1.05845 1.71950 1.17900 0.86970 0.82998 0.76998 1.90795 1.13343 1.86967 1.50115 1.20986 0.97091 0.95370 1.07174 1.21570 0.99407 0.89578 0.90923 1.21500 0.94014 1.00688 1.05670 1.18511 0.88634 0.85785 0.93018 1.41500 1.13525 1.04415 1.47842 1.21936 1.01708 0.82007 1.08536 1.21078 0.94201 0.99371 1.05638 1.21112 1.00762 0.92724 1.07414 1.22153 0.85887 0.99173 1.03922 1.67150 1.37389 0.97399 1.19948 1.24079 0.89930 0.95610 0.91224 1.22285 0.97311 0.80995 0.96987 0.87444 1.23229 1.01159 0.97238 0.96739 1.21560 0.98371 0.92671 0.85443 1.44509 1.82025 1.01537 1.04588 1.19693 1.35311 0.85814 1.05895 0.91790 1.25791 0.98277 0.98434 1.00084 1.70781 1.09857 1.34654 1.39794 0.83544 0.75517 0.76103 0.75509 1.21069 1.21962 1.22065 1.21575 0.98205 0.86370 0.93702 0.91179 0.90005 0.89653 0.82652 0.83468 0.81431 0.83772 0.83861 0.81119 0.78909 0.91094 0.91429 0.95234 0.92761 0.92009 0.95208 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 7.70 59.84 0.46 1.03 16 2 N -0.59 -8.31 2.89 -173.02 -0.50 -8.81 16 3 C 0.56 8.09 7.53 -12.42 -0.09 8.00 16 4 O -0.53 -9.43 15.98 5.29 0.08 -9.35 16 5 C -0.20 -2.28 5.59 -104.81 -0.59 -2.86 16 6 C 0.01 0.11 9.70 -38.91 -0.38 -0.26 16 7 C -0.20 -1.69 9.46 -39.32 -0.37 -2.06 16 8 C 0.37 3.78 7.48 -154.56 -1.16 2.63 16 9 N -0.40 -3.86 2.96 -62.65 -0.19 -4.05 16 10 C -0.02 -0.13 10.71 -16.60 -0.18 -0.31 16 11 C -0.18 -1.37 10.86 -39.75 -0.43 -1.81 16 12 C -0.20 -1.63 10.86 -39.75 -0.43 -2.06 16 13 C 0.01 0.13 10.99 -16.60 -0.18 -0.05 16 14 N -0.51 -5.53 9.80 -12.00 -0.12 -5.65 16 15 C 0.15 1.54 8.75 -17.15 -0.15 1.39 16 16 C 0.13 2.20 3.35 -66.10 -0.22 1.98 16 17 H 0.11 2.03 7.00 -51.93 -0.36 1.67 16 18 C -0.14 -2.49 6.64 -24.46 -0.16 -2.66 16 19 C 0.15 3.27 5.39 -2.41 -0.01 3.26 16 20 N -0.60 -14.83 3.27 -169.93 -0.56 -15.38 16 21 C -0.34 -9.43 9.99 -15.06 -0.15 -9.58 16 22 H 0.06 1.78 7.98 -52.49 -0.42 1.36 16 23 C -0.02 -0.66 5.08 -17.43 -0.09 -0.75 16 24 N -0.91 -27.22 12.98 55.49 0.72 -26.49 16 25 Si 1.06 24.94 30.01 -169.99 -5.10 19.84 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.13 2.63 6.88 -3.06 -0.02 2.61 16 30 H 0.07 0.67 6.73 -51.93 -0.35 0.32 16 31 H 0.08 0.70 4.95 -51.93 -0.26 0.45 16 32 H 0.08 0.94 6.09 -51.93 -0.32 0.62 16 33 H 0.16 1.36 7.87 -52.49 -0.41 0.95 16 34 H 0.15 0.84 6.66 -52.49 -0.35 0.49 16 35 H 0.17 0.83 6.96 -52.49 -0.37 0.46 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.17 1.46 8.03 -52.49 -0.42 1.03 16 39 H 0.19 1.69 4.11 -52.49 -0.22 1.47 16 40 H 0.07 1.12 6.09 -51.93 -0.32 0.81 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.72 6.84 -51.93 -0.36 0.36 16 43 H 0.05 1.32 8.06 -51.93 -0.42 0.90 16 44 H 0.27 8.09 6.28 -40.82 -0.26 7.83 16 45 H 0.03 0.58 6.80 -51.93 -0.35 0.23 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -34.08 369.02 -9.90 -43.99 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.66 Total: 1.84 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -4.15 Total: -1.50 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.64 Total: -60.38 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.08 -9.90 -43.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.373 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds