Wall clock time and date at job start Sat Apr 11 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99826 * 2 1 4 4 O 1.21586 * 120.00284 * 184.88719 * 3 2 1 5 5 C 1.47647 * 120.00289 * 4.88442 * 3 2 1 6 6 C 1.40248 * 120.49651 * 201.16666 * 5 3 2 7 7 C 1.38003 * 118.35631 * 179.75286 * 6 5 3 8 8 C 1.39179 * 119.25733 * 0.52787 * 7 6 5 9 9 N 1.39411 * 119.52873 * 179.74260 * 8 7 6 10 10 C 1.36715 * 125.69413 * 359.66135 * 9 8 7 11 11 C 1.34769 * 108.19001 * 179.87122 * 10 9 8 12 12 C 1.41028 * 107.49991 * 0.38973 * 11 10 9 13 13 C 1.34771 * 107.49912 * 359.75748 * 12 11 10 14 14 N 1.32453 * 120.93978 * 359.71061 * 8 7 6 15 15 C 1.31635 * 121.79507 * 0.03236 * 14 8 7 16 16 C 1.46492 * 120.00187 * 179.97438 * 2 1 3 17 17 H 1.09007 * 110.64306 * 178.31665 * 16 2 1 18 18 C 1.55161 * 110.87266 * 55.06609 * 16 2 1 19 19 C 1.55130 * 101.48477 * 205.89718 * 18 16 2 20 20 N 1.47419 * 104.72311 * 37.29812 * 19 18 16 21 21 C 1.36938 * 125.64811 * 155.81228 * 20 19 18 22 22 H 1.07995 * 119.99967 * 198.75347 * 21 20 19 23 23 C 1.38815 * 119.99845 * 18.75667 * 21 20 19 24 24 N 1.31617 * 120.00098 * 29.20151 * 23 21 20 25 25 Si 1.86800 * 119.99729 * 209.19803 * 23 21 20 26 26 H 1.48501 * 109.46929 * 179.97438 * 25 23 21 27 27 H 1.48492 * 109.47380 * 300.00170 * 25 23 21 28 28 H 1.48503 * 109.46987 * 60.00260 * 25 23 21 29 29 C 1.47023 * 108.70289 * 335.54795 * 20 19 18 30 30 H 1.08997 * 109.47498 * 264.63156 * 1 2 3 31 31 H 1.09006 * 109.47098 * 24.63472 * 1 2 3 32 32 H 1.09004 * 109.47034 * 144.62408 * 1 2 3 33 33 H 1.07998 * 120.82504 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.37080 * 180.23493 * 7 6 5 35 35 H 1.07999 * 125.90192 * 0.02562 * 10 9 8 36 36 H 1.07994 * 126.25064 * 180.14876 * 11 10 9 37 37 H 1.07994 * 126.24980 * 179.75804 * 12 11 10 38 38 H 1.07996 * 125.90289 * 179.97438 * 13 12 11 39 39 H 1.07999 * 119.68117 * 180.02562 * 15 14 8 40 40 H 1.08993 * 111.00455 * 324.14407 * 18 16 2 41 41 H 1.09000 * 110.99941 * 87.95165 * 18 16 2 42 42 H 1.09002 * 110.49821 * 278.45050 * 19 18 16 43 43 H 1.09005 * 110.33697 * 156.05780 * 19 18 16 44 44 H 0.96999 * 120.00163 * 6.35288 * 24 23 21 45 45 H 1.09003 * 109.87732 * 120.70575 * 29 20 19 46 46 H 1.08999 * 109.88267 * 241.86666 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3513 1.1692 -0.0897 5 6 1.4046 2.4436 0.1089 6 6 1.9927 3.6419 -0.3214 7 6 1.2648 4.8084 -0.2039 8 6 -0.0140 4.7601 0.3433 9 7 -0.7522 5.9359 0.4696 10 6 -0.3327 7.1844 0.1031 11 6 -1.3218 8.0579 0.3771 12 6 -2.3883 7.3276 0.9411 13 6 -2.0143 6.0336 0.9862 14 7 -0.5398 3.6127 0.7452 15 6 0.1174 2.4764 0.6468 16 6 2.1974 -1.2686 0.0006 17 1 3.2726 -1.0916 -0.0295 18 6 1.7549 -2.1630 -1.1876 19 6 2.0760 -3.5800 -0.6439 20 7 1.7366 -3.5172 0.7893 21 6 1.4058 -4.5861 1.5788 22 1 0.8880 -4.4276 2.5131 23 6 1.7362 -5.8734 1.1780 24 7 2.7950 -6.0763 0.4230 25 14 0.6780 -7.3178 1.7104 26 1 1.2399 -8.5747 1.1539 27 1 0.6588 -7.3974 3.1931 28 1 -0.7063 -7.1294 1.2068 29 6 1.8182 -2.1176 1.2322 30 1 -0.3634 -0.0961 1.0231 31 1 -0.3633 0.9342 -0.4284 32 1 -0.3633 -0.8380 -0.5950 33 1 2.9892 3.6511 -0.7377 34 1 1.6846 5.7491 -0.5286 35 1 0.6247 7.4281 -0.3330 36 1 -1.3000 9.1231 0.2010 37 1 -3.3324 7.7315 1.2756 38 1 -2.6086 5.2154 1.3653 39 1 -0.3444 1.5605 0.9849 40 1 0.6893 -2.0493 -1.3865 41 1 2.3421 -1.9459 -2.0799 42 1 3.1340 -3.8079 -0.7736 43 1 1.4617 -4.3269 -1.1468 44 1 3.3959 -5.3416 0.2228 45 1 0.8525 -1.7952 1.6216 46 1 2.5831 -2.0164 2.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033515943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:20 Heat of formation + Delta-G solvation = 103.288813 kcal Electronic energy + Delta-G solvation = -28583.780268 eV Core-core repulsion = 24669.065525 eV Total energy + Delta-G solvation = -3914.714743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.84696 -41.82765 -40.38280 -39.08695 -36.71362 -34.84176 -34.06004 -33.78976 -31.39199 -30.65791 -29.92862 -29.16178 -28.30039 -26.42681 -25.32736 -24.91119 -22.60339 -22.23801 -21.38647 -21.23530 -20.64093 -19.62987 -19.57533 -18.81091 -17.97714 -17.36494 -16.62595 -16.45450 -16.35936 -16.13894 -15.90922 -15.63239 -15.15600 -15.14109 -14.75454 -14.66882 -14.44943 -14.34245 -14.31585 -14.08611 -13.79968 -13.44510 -13.27517 -13.01389 -12.85201 -12.63247 -12.54708 -12.51126 -12.44622 -11.90013 -11.72725 -11.61390 -11.43007 -11.28589 -10.93145 -10.80636 -10.53505 -9.85218 -9.33906 -9.26760 -9.06219 -8.34970 -5.38594 -0.80042 -0.05782 1.08372 1.48018 1.58540 1.65355 1.68342 1.73884 1.85573 2.02529 2.59091 2.64279 3.04782 3.15098 3.23025 3.48096 3.52704 3.57847 3.65881 3.74413 3.80810 4.00787 4.05068 4.16263 4.25840 4.31115 4.35586 4.39029 4.45098 4.47012 4.64369 4.68906 4.71523 4.77260 4.81686 4.90465 4.92012 5.00896 5.14159 5.19508 5.23982 5.29727 5.37618 5.66261 5.82703 6.00875 6.17621 6.25841 6.27801 6.60912 6.83864 6.88978 7.65967 8.23843 8.95124 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.002091 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.250613 B =13385.163794 C =14165.587766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.591 5.591 3 C 0.565 3.435 4 O -0.574 6.574 5 C -0.213 4.213 6 C 0.012 3.988 7 C -0.186 4.186 8 C 0.360 3.640 9 N -0.407 5.407 10 C -0.022 4.022 11 C -0.188 4.188 12 C -0.198 4.198 13 C -0.014 4.014 14 N -0.522 5.522 15 C 0.155 3.845 16 C 0.144 3.856 17 H 0.089 0.911 18 C -0.124 4.124 19 C 0.148 3.852 20 N -0.619 5.619 21 C -0.348 4.348 22 H 0.061 0.939 23 C -0.077 4.077 24 N -0.940 5.940 25 Si 1.117 2.883 26 H -0.293 1.293 27 H -0.275 1.275 28 H -0.276 1.276 29 C 0.128 3.872 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.197 0.803 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.207 0.793 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.004 0.996 43 H 0.031 0.969 44 H 0.253 0.747 45 H 0.048 0.952 46 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 28.514 -3.592 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.321 5.321 3 C 0.355 3.645 4 O -0.455 6.455 5 C -0.220 4.220 6 C -0.014 4.014 7 C -0.208 4.208 8 C 0.132 3.868 9 N -0.083 5.083 10 C -0.146 4.146 11 C -0.211 4.211 12 C -0.222 4.222 13 C -0.139 4.139 14 N -0.234 5.234 15 C -0.003 4.003 16 C 0.039 3.961 17 H 0.107 0.893 18 C -0.163 4.163 19 C 0.022 3.978 20 N -0.347 5.347 21 C -0.476 4.476 22 H 0.079 0.921 23 C -0.273 4.273 24 N -0.582 5.582 25 Si 0.941 3.059 26 H -0.219 1.219 27 H -0.201 1.201 28 H -0.202 1.202 29 C 0.002 3.998 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.214 0.786 36 H 0.184 0.816 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.223 0.777 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.022 0.978 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -9.947 26.616 -3.399 28.616 hybrid contribution 1.485 1.133 0.122 1.871 sum -8.463 27.749 -3.276 29.195 Atomic orbital electron populations 1.22764 0.77721 1.05218 1.03577 1.47634 1.08177 1.04495 1.71809 1.18308 0.86591 0.83774 0.75817 1.90774 1.15159 1.87555 1.51979 1.20757 0.97605 0.94285 1.09308 1.21729 0.99788 0.89406 0.90455 1.21749 0.93069 1.01486 1.04473 1.18836 0.89300 0.85877 0.92741 1.41673 1.13640 1.04741 1.48246 1.22532 1.02902 0.81255 1.07903 1.21452 0.93870 1.00528 1.05275 1.21444 1.01571 0.92508 1.06633 1.22343 0.86403 0.99843 1.05276 1.67180 1.37805 0.97811 1.20632 1.24199 0.89410 0.96027 0.90683 1.21791 0.96774 0.82217 0.95297 0.89321 1.23082 1.02885 0.93280 0.97007 1.21465 0.96320 0.95371 0.84672 1.44765 1.81848 1.02547 1.05513 1.19971 1.34485 0.87028 1.06125 0.92113 1.27234 0.98646 1.01384 1.00080 1.70905 1.11102 1.34056 1.42106 0.82840 0.74428 0.72543 0.76098 1.21912 1.20109 1.20228 1.21650 0.98368 0.85028 0.94723 0.89847 0.87564 0.89613 0.81889 0.80338 0.78608 0.81638 0.82389 0.81227 0.77699 0.88875 0.89489 0.97815 0.95072 0.93680 0.93383 0.97559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 7.70 127.77 0.98 1.89 16 2 N -0.59 -15.81 2.89 -819.58 -2.36 -18.18 16 3 C 0.57 15.72 7.53 86.73 0.65 16.37 16 4 O -0.57 -20.27 15.98 -3.99 -0.06 -20.33 16 5 C -0.21 -4.50 5.59 -19.99 -0.11 -4.62 16 6 C 0.01 0.22 9.70 22.70 0.22 0.44 16 7 C -0.19 -2.66 9.46 22.44 0.21 -2.45 16 8 C 0.36 6.61 7.48 132.92 0.99 7.60 16 9 N -0.41 -7.04 2.96 -352.11 -1.04 -8.08 16 10 C -0.02 -0.28 10.71 83.14 0.89 0.61 16 11 C -0.19 -2.38 10.86 22.16 0.24 -2.14 16 12 C -0.20 -2.91 10.86 22.16 0.24 -2.67 16 13 C -0.01 -0.24 10.99 83.14 0.91 0.67 16 14 N -0.52 -10.44 9.80 -191.88 -1.88 -12.32 16 15 C 0.16 2.88 8.75 85.04 0.74 3.63 16 16 C 0.14 4.95 3.35 46.18 0.15 5.11 16 17 H 0.09 3.43 7.00 -2.38 -0.02 3.42 16 18 C -0.12 -4.18 6.64 32.07 0.21 -3.96 16 19 C 0.15 6.83 5.39 86.93 0.47 7.29 16 20 N -0.62 -31.27 3.27 -691.54 -2.26 -33.53 16 21 C -0.35 -19.60 9.99 84.03 0.84 -18.76 16 22 H 0.06 3.39 7.98 -2.91 -0.02 3.37 16 23 C -0.08 -4.41 5.08 84.86 0.43 -3.98 16 24 N -0.94 -57.96 12.98 21.65 0.28 -57.67 16 25 Si 1.12 50.60 30.01 68.60 2.06 52.66 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.13 5.31 6.88 86.73 0.60 5.90 16 30 H 0.08 1.38 6.73 -2.39 -0.02 1.37 16 31 H 0.11 1.53 4.95 -2.38 -0.01 1.52 16 32 H 0.09 1.65 6.09 -2.38 -0.01 1.64 16 33 H 0.16 2.56 7.87 -2.91 -0.02 2.54 16 34 H 0.18 1.31 6.66 -2.91 -0.02 1.29 16 35 H 0.20 1.15 6.96 -2.91 -0.02 1.13 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.17 2.81 8.03 -2.91 -0.02 2.78 16 39 H 0.21 3.11 4.11 -2.91 -0.01 3.10 16 40 H 0.09 2.75 6.09 -2.39 -0.01 2.74 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.00 0.21 6.84 -2.39 -0.02 0.19 16 43 H 0.03 1.56 8.06 -2.38 -0.02 1.54 16 44 H 0.25 15.99 6.28 -92.71 -0.58 15.40 16 45 H 0.05 1.82 6.80 -2.39 -0.02 1.80 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -76.21 369.02 4.62 -71.59 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.21 Total: 14.95 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 8.68 Total: 10.92 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -7.26 Total: -129.79 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.06 Total: 52.66 kcal Total: -76.21 4.62 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.879 kcal (2) G-P(sol) polarization free energy of solvation -76.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds