Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99465 * 2 1 4 4 O 1.21560 * 119.99493 * 184.88164 * 3 2 1 5 5 C 1.47860 * 120.00546 * 4.87270 * 3 2 1 6 6 C 1.39610 * 120.11418 * 320.77995 * 5 3 2 7 7 C 1.37968 * 119.98667 * 180.02562 * 6 5 3 8 8 C 1.38267 * 120.21233 * 359.97438 * 7 6 5 9 9 C 1.38894 * 120.23010 * 0.02562 * 8 7 6 10 10 N 1.40261 * 119.99115 * 179.97438 * 9 8 7 11 11 C 1.37094 * 126.47834 * 359.73946 * 10 9 8 12 12 C 1.34656 * 106.83858 * 179.84080 * 11 10 9 13 13 N 1.34126 * 108.19173 * 0.42215 * 12 11 10 14 14 C 1.30517 * 109.35049 * 359.72874 * 13 12 11 15 15 C 1.38573 * 120.01462 * 359.97438 * 9 8 7 16 16 C 1.46500 * 120.00056 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88113 * 176.12295 * 16 2 1 18 18 C 1.55150 * 111.00571 * 300.00344 * 16 2 1 19 19 C 1.54322 * 102.94018 * 153.57713 * 18 16 2 20 20 N 1.47024 * 107.27127 * 337.80592 * 19 18 16 21 21 C 1.36938 * 125.64897 * 178.98394 * 20 19 18 22 22 H 1.08004 * 120.00105 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99924 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47169 * 60.00115 * 25 23 21 27 27 H 1.48502 * 109.47027 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47205 * 299.99558 * 25 23 21 29 29 C 1.47416 * 108.70374 * 358.94175 * 20 19 18 30 30 H 1.09005 * 109.46965 * 85.47119 * 1 2 3 31 31 H 1.09002 * 109.47479 * 205.46763 * 1 2 3 32 32 H 1.08995 * 109.47507 * 325.47090 * 1 2 3 33 33 H 1.08007 * 120.00493 * 0.03193 * 6 5 3 34 34 H 1.07997 * 119.89247 * 179.72325 * 7 6 5 35 35 H 1.08010 * 119.88282 * 179.97438 * 8 7 6 36 36 H 1.07999 * 126.58164 * 359.97438 * 11 10 9 37 37 H 1.08001 * 125.90730 * 180.17605 * 12 11 10 38 38 H 1.08008 * 125.71433 * 179.97438 * 14 13 12 39 39 H 1.08000 * 120.11035 * 180.02562 * 15 9 8 40 40 H 1.08995 * 110.72216 * 271.93745 * 18 16 2 41 41 H 1.08998 * 110.72281 * 35.21843 * 18 16 2 42 42 H 1.08996 * 109.88748 * 97.22510 * 19 18 16 43 43 H 1.09004 * 109.88715 * 218.23949 * 19 18 16 44 44 H 0.96999 * 119.99982 * 180.02562 * 24 23 21 45 45 H 1.09001 * 110.37093 * 265.28799 * 29 20 19 46 46 H 1.09002 * 110.36856 * 142.96327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3511 1.1692 -0.0896 5 6 1.4035 2.4454 0.1088 6 6 0.1902 2.6147 -0.5608 7 6 -0.4935 3.8087 -0.4579 8 6 0.0188 4.8400 0.3074 9 6 1.2251 4.6813 0.9773 10 7 1.7403 5.7310 1.7519 11 6 1.1705 6.9643 1.9355 12 6 1.9915 7.6562 2.7481 13 7 3.0399 6.8752 3.0478 14 6 2.9011 5.7196 2.4573 15 6 1.9196 3.4861 0.8806 16 6 2.1975 -1.2687 0.0006 17 1 3.2717 -1.0972 -0.0684 18 6 1.8484 -2.1119 1.2552 19 6 2.1064 -3.5581 0.7825 20 7 2.0266 -3.5582 -0.6856 21 6 2.2162 -4.6463 -1.4951 22 1 2.1352 -4.5426 -2.5671 23 6 2.5126 -5.8827 -0.9379 24 7 2.6119 -6.0091 0.3685 25 14 2.7706 -7.3671 -2.0421 26 1 3.9059 -7.1074 -2.9635 27 1 3.0731 -8.5579 -1.2080 28 1 1.5384 -7.6161 -2.8327 29 6 1.7076 -2.1932 -1.1418 30 1 -0.3633 0.0811 -1.0245 31 1 -0.3634 -0.9278 0.4419 32 1 -0.3634 0.8466 0.5825 33 1 -0.2132 1.8111 -1.1592 34 1 -1.4297 3.9396 -0.9801 35 1 -0.5207 5.7727 0.3839 36 1 0.2405 7.3131 1.5116 37 1 1.8351 8.6669 3.0951 38 1 3.5935 4.8929 2.5187 39 1 2.8575 3.3608 1.4012 40 1 2.5042 -1.8554 2.0871 41 1 0.8026 -1.9775 1.5315 42 1 3.0981 -3.8805 1.0998 43 1 1.3499 -4.2244 1.1971 44 1 2.8194 -6.8730 0.7578 45 1 0.6327 -2.0825 -1.2848 46 1 2.2393 -1.9682 -2.0663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033552382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = 109.563411 kcal Electronic energy + Delta-G solvation = -28615.752788 eV Core-core repulsion = 24701.310131 eV Total energy + Delta-G solvation = -3914.442656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68510 -40.63459 -38.90457 -37.35685 -35.21381 -34.35682 -32.34589 -31.72992 -30.26564 -29.56477 -29.17796 -27.62031 -26.96425 -24.90684 -23.99547 -23.89060 -21.87538 -21.14704 -20.46953 -20.18392 -19.45215 -18.58952 -17.12322 -17.04400 -16.60600 -16.20067 -15.89567 -15.71057 -15.10734 -14.76544 -14.67724 -14.44440 -14.15302 -14.02619 -13.90270 -13.72676 -13.39674 -13.16853 -12.87545 -12.67442 -12.47595 -12.21026 -11.99721 -11.82003 -11.74055 -11.04652 -10.98922 -10.90834 -10.81961 -10.44861 -10.38080 -10.17236 -9.94003 -9.88414 -9.73112 -9.53636 -9.12270 -8.70976 -8.67763 -8.49726 -6.90304 -5.75899 -3.10554 0.28411 0.56449 1.81365 2.19034 2.60846 2.77404 2.91598 3.32821 3.38492 3.42887 3.44034 4.05449 4.17203 4.30134 4.34362 4.46761 4.50037 4.61683 4.68086 4.92258 5.04426 5.10697 5.15814 5.20844 5.29251 5.36933 5.40973 5.43470 5.55403 5.58742 5.63757 5.73670 5.78804 5.81900 5.95770 6.08558 6.11099 6.21455 6.33111 6.42034 6.48301 6.59486 6.81921 6.83705 7.38485 7.49613 7.54196 7.61800 7.76775 8.07488 8.19973 9.16179 9.76076 10.40446 11.35544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.002089 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.928922 B =13397.920946 C =13893.793520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.554 3.446 4 O -0.531 6.531 5 C -0.091 4.091 6 C -0.100 4.100 7 C -0.098 4.098 8 C -0.115 4.115 9 C 0.126 3.874 10 N -0.410 5.410 11 C -0.056 4.056 12 C -0.023 4.023 13 N -0.485 5.485 14 C 0.193 3.807 15 C -0.082 4.082 16 C 0.122 3.878 17 H 0.109 0.891 18 C -0.153 4.153 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.231 4.231 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.132 3.868 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.210 0.790 39 H 0.141 0.859 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.254 0.746 45 H 0.022 0.978 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 24.185 1.781 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.322 5.322 3 C 0.342 3.658 4 O -0.408 6.408 5 C -0.095 4.095 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.135 4.135 9 C 0.033 3.967 10 N -0.089 5.089 11 C -0.186 4.186 12 C -0.169 4.169 13 N -0.202 5.202 14 C -0.088 4.088 15 C -0.102 4.102 16 C 0.019 3.981 17 H 0.127 0.873 18 C -0.192 4.192 19 C 0.054 3.946 20 N -0.329 5.329 21 C -0.359 4.359 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.005 3.995 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.227 0.773 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.532 24.107 2.246 25.671 hybrid contribution -0.681 -1.012 -1.030 1.596 sum -9.213 23.095 1.216 24.895 Atomic orbital electron populations 1.22157 0.79875 1.03876 1.01600 1.47718 1.07031 1.05840 1.71586 1.18191 0.87069 0.83323 0.77253 1.90814 1.13427 1.86983 1.49594 1.19799 0.95688 0.94538 0.99503 1.21844 0.93203 0.98456 0.98350 1.21006 1.00352 0.92129 0.98120 1.21015 0.94211 1.00520 0.97719 1.17643 0.95256 0.87625 0.96137 1.43240 1.18810 1.10944 1.35919 1.22757 1.02972 0.85775 1.07097 1.22392 0.92441 1.00812 1.01214 1.70365 1.24694 1.02025 1.23133 1.25404 0.89074 0.99018 0.95340 1.20796 0.99914 0.90337 0.99150 1.22556 0.97491 0.80614 0.97488 0.87350 1.23262 1.00581 0.98720 0.96649 1.21153 1.01142 0.88820 0.83476 1.44367 1.83186 1.03106 1.02248 1.18999 1.41607 0.85917 0.89360 0.90397 1.24821 1.01739 0.97728 0.96046 1.69939 1.54662 1.23605 1.08671 0.86170 0.78042 0.82100 0.79253 1.21090 1.21558 1.21143 1.21736 0.97094 0.85949 0.94733 0.92034 0.89878 0.90898 0.83608 0.84167 0.84818 0.80480 0.80807 0.77307 0.84129 0.91809 0.92034 0.93235 0.93569 0.93595 0.96003 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 7.46 59.85 0.45 1.13 16 2 N -0.59 -8.29 2.91 -172.59 -0.50 -8.79 16 3 C 0.55 8.02 7.35 -12.32 -0.09 7.93 16 4 O -0.53 -9.71 16.30 5.31 0.09 -9.63 16 5 C -0.09 -0.99 5.23 -104.99 -0.55 -1.54 16 6 C -0.10 -0.79 7.56 -39.17 -0.30 -1.09 16 7 C -0.10 -0.59 10.02 -39.67 -0.40 -0.99 16 8 C -0.11 -0.77 9.47 -39.33 -0.37 -1.14 16 9 C 0.13 1.11 6.63 -83.63 -0.55 0.56 16 10 N -0.41 -3.79 2.99 -62.14 -0.19 -3.97 16 11 C -0.06 -0.44 10.85 -16.47 -0.18 -0.62 16 12 C -0.02 -0.20 11.85 -17.82 -0.21 -0.42 16 13 N -0.49 -5.62 11.24 -14.47 -0.16 -5.78 16 14 C 0.19 1.96 11.91 -89.64 -1.07 0.89 16 15 C -0.08 -0.83 9.05 -39.00 -0.35 -1.18 16 16 C 0.12 2.16 3.45 -65.78 -0.23 1.93 16 17 H 0.11 2.17 7.02 -51.93 -0.36 1.81 16 18 C -0.15 -2.77 6.50 -24.90 -0.16 -2.93 16 19 C 0.18 4.23 5.37 -3.06 -0.02 4.21 16 20 N -0.60 -15.04 3.39 -170.07 -0.58 -15.61 16 21 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 22 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -26.68 10.31 55.49 0.57 -26.10 16 25 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.13 2.65 6.79 -2.53 -0.02 2.63 16 30 H 0.06 0.52 6.89 -51.93 -0.36 0.16 16 31 H 0.08 0.91 6.39 -51.93 -0.33 0.58 16 32 H 0.07 0.58 5.82 -51.93 -0.30 0.28 16 33 H 0.15 0.97 5.29 -52.48 -0.28 0.70 16 34 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.13 0.58 6.80 -52.48 -0.36 0.22 16 36 H 0.18 0.77 7.14 -52.49 -0.37 0.40 16 37 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.21 1.64 7.06 -52.48 -0.37 1.27 16 39 H 0.14 1.42 6.76 -52.49 -0.35 1.06 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.00 6.45 -51.93 -0.33 0.66 16 42 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 43 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.42 6.98 -51.93 -0.36 0.05 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -34.54 369.32 -10.32 -44.87 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.80 Total: 0.01 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.30 Total: 2.62 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.86 Total: -60.27 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -10.32 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033552382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.431 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds