Wall clock time and date at job start Sat Apr 11 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99465 * 2 1 4 4 O 1.21560 * 119.99493 * 184.88164 * 3 2 1 5 5 C 1.47860 * 120.00546 * 4.87270 * 3 2 1 6 6 C 1.39610 * 120.11418 * 320.77995 * 5 3 2 7 7 C 1.37968 * 119.98667 * 180.02562 * 6 5 3 8 8 C 1.38267 * 120.21233 * 359.97438 * 7 6 5 9 9 C 1.38894 * 120.23010 * 0.02562 * 8 7 6 10 10 N 1.40261 * 119.99115 * 179.97438 * 9 8 7 11 11 C 1.37094 * 126.47834 * 359.73946 * 10 9 8 12 12 C 1.34656 * 106.83858 * 179.84080 * 11 10 9 13 13 N 1.34126 * 108.19173 * 0.42215 * 12 11 10 14 14 C 1.30517 * 109.35049 * 359.72874 * 13 12 11 15 15 C 1.38573 * 120.01462 * 359.97438 * 9 8 7 16 16 C 1.46500 * 120.00056 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88113 * 176.12295 * 16 2 1 18 18 C 1.55150 * 111.00571 * 300.00344 * 16 2 1 19 19 C 1.54322 * 102.94018 * 153.57713 * 18 16 2 20 20 N 1.47024 * 107.27127 * 337.80592 * 19 18 16 21 21 C 1.36938 * 125.64897 * 178.98394 * 20 19 18 22 22 H 1.08004 * 120.00105 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99924 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47169 * 60.00115 * 25 23 21 27 27 H 1.48502 * 109.47027 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47205 * 299.99558 * 25 23 21 29 29 C 1.47416 * 108.70374 * 358.94175 * 20 19 18 30 30 H 1.09005 * 109.46965 * 85.47119 * 1 2 3 31 31 H 1.09002 * 109.47479 * 205.46763 * 1 2 3 32 32 H 1.08995 * 109.47507 * 325.47090 * 1 2 3 33 33 H 1.08007 * 120.00493 * 0.03193 * 6 5 3 34 34 H 1.07997 * 119.89247 * 179.72325 * 7 6 5 35 35 H 1.08010 * 119.88282 * 179.97438 * 8 7 6 36 36 H 1.07999 * 126.58164 * 359.97438 * 11 10 9 37 37 H 1.08001 * 125.90730 * 180.17605 * 12 11 10 38 38 H 1.08008 * 125.71433 * 179.97438 * 14 13 12 39 39 H 1.08000 * 120.11035 * 180.02562 * 15 9 8 40 40 H 1.08995 * 110.72216 * 271.93745 * 18 16 2 41 41 H 1.08998 * 110.72281 * 35.21843 * 18 16 2 42 42 H 1.08996 * 109.88748 * 97.22510 * 19 18 16 43 43 H 1.09004 * 109.88715 * 218.23949 * 19 18 16 44 44 H 0.96999 * 119.99982 * 180.02562 * 24 23 21 45 45 H 1.09001 * 110.37093 * 265.28799 * 29 20 19 46 46 H 1.09002 * 110.36856 * 142.96327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3511 1.1692 -0.0896 5 6 1.4035 2.4454 0.1088 6 6 0.1902 2.6147 -0.5608 7 6 -0.4935 3.8087 -0.4579 8 6 0.0188 4.8400 0.3074 9 6 1.2251 4.6813 0.9773 10 7 1.7403 5.7310 1.7519 11 6 1.1705 6.9643 1.9355 12 6 1.9915 7.6562 2.7481 13 7 3.0399 6.8752 3.0478 14 6 2.9011 5.7196 2.4573 15 6 1.9196 3.4861 0.8806 16 6 2.1975 -1.2687 0.0006 17 1 3.2717 -1.0972 -0.0684 18 6 1.8484 -2.1119 1.2552 19 6 2.1064 -3.5581 0.7825 20 7 2.0266 -3.5582 -0.6856 21 6 2.2162 -4.6463 -1.4951 22 1 2.1352 -4.5426 -2.5671 23 6 2.5126 -5.8827 -0.9379 24 7 2.6119 -6.0091 0.3685 25 14 2.7706 -7.3671 -2.0421 26 1 3.9059 -7.1074 -2.9635 27 1 3.0731 -8.5579 -1.2080 28 1 1.5384 -7.6161 -2.8327 29 6 1.7076 -2.1932 -1.1418 30 1 -0.3633 0.0811 -1.0245 31 1 -0.3634 -0.9278 0.4419 32 1 -0.3634 0.8466 0.5825 33 1 -0.2132 1.8111 -1.1592 34 1 -1.4297 3.9396 -0.9801 35 1 -0.5207 5.7727 0.3839 36 1 0.2405 7.3131 1.5116 37 1 1.8351 8.6669 3.0951 38 1 3.5935 4.8929 2.5187 39 1 2.8575 3.3608 1.4012 40 1 2.5042 -1.8554 2.0871 41 1 0.8026 -1.9775 1.5315 42 1 3.0981 -3.8805 1.0998 43 1 1.3499 -4.2244 1.1971 44 1 2.8194 -6.8730 0.7578 45 1 0.6327 -2.0825 -1.2848 46 1 2.2393 -1.9682 -2.0663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033552382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:24 Heat of formation + Delta-G solvation = 89.646469 kcal Electronic energy + Delta-G solvation = -28616.616451 eV Core-core repulsion = 24701.310131 eV Total energy + Delta-G solvation = -3915.306320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33720 -41.63282 -39.84401 -38.82361 -36.48524 -35.21301 -34.05348 -32.52180 -31.32197 -30.72964 -30.16287 -29.07943 -28.01992 -26.58965 -25.00535 -24.61063 -22.75234 -22.07949 -21.84421 -21.38557 -20.53478 -19.48839 -18.96046 -18.10809 -17.33282 -17.25791 -16.73358 -16.62479 -16.46478 -16.08773 -15.85600 -15.50037 -15.28679 -14.86554 -14.62216 -14.56631 -14.33873 -14.29010 -14.11806 -13.99175 -13.82809 -13.64305 -13.31067 -12.94496 -12.71705 -12.68570 -12.52430 -12.29026 -12.11424 -12.08568 -11.82351 -11.70029 -11.51582 -11.15365 -11.05659 -10.72597 -10.19371 -9.76137 -9.72855 -9.34188 -8.93032 -7.86675 -5.23526 -0.34770 -0.08726 1.18269 1.45682 1.48084 1.49589 1.55655 1.69538 1.85756 2.07790 2.49542 2.64847 3.24359 3.32116 3.59304 3.64516 3.70705 3.75314 3.84665 3.90043 3.97227 4.02603 4.08306 4.16238 4.24560 4.39733 4.52208 4.53791 4.59574 4.60712 4.65914 4.73549 4.80102 4.83980 4.88558 4.98687 5.09876 5.15612 5.24778 5.34261 5.41511 5.47650 5.58373 5.60478 5.71219 5.73512 6.16306 6.17274 6.29428 6.95325 6.97157 7.07125 7.73229 8.36695 9.23271 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.002089 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.928922 B =13397.920946 C =13893.793520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.588 5.588 3 C 0.553 3.447 4 O -0.583 6.583 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.083 4.083 8 C -0.101 4.101 9 C 0.114 3.886 10 N -0.412 5.412 11 C -0.043 4.043 12 C -0.047 4.047 13 N -0.521 5.521 14 C 0.170 3.830 15 C -0.096 4.096 16 C 0.138 3.862 17 H 0.078 0.922 18 C -0.134 4.134 19 C 0.188 3.812 20 N -0.625 5.625 21 C -0.244 4.244 22 H 0.084 0.916 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.981 3.019 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.134 3.866 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.182 0.818 35 H 0.167 0.833 36 H 0.218 0.782 37 H 0.195 0.805 38 H 0.215 0.785 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.008 0.992 43 H 0.018 0.982 44 H 0.248 0.752 45 H 0.049 0.951 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 26.571 0.281 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.318 5.318 3 C 0.342 3.658 4 O -0.464 6.464 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.121 4.121 9 C 0.022 3.978 10 N -0.091 5.091 11 C -0.173 4.173 12 C -0.192 4.192 13 N -0.239 5.239 14 C -0.111 4.111 15 C -0.116 4.116 16 C 0.033 3.967 17 H 0.097 0.903 18 C -0.173 4.173 19 C 0.063 3.937 20 N -0.352 5.352 21 C -0.373 4.373 22 H 0.102 0.898 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.809 3.191 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.008 3.992 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.180 0.820 34 H 0.199 0.801 35 H 0.184 0.816 36 H 0.235 0.765 37 H 0.212 0.788 38 H 0.231 0.769 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.283 26.532 0.727 29.246 hybrid contribution 0.423 -1.637 -0.590 1.791 sum -11.860 24.895 0.138 27.576 Atomic orbital electron populations 1.22500 0.76973 1.04906 1.03751 1.47679 1.08609 1.04230 1.71332 1.18814 0.86657 0.84490 0.75809 1.90784 1.15910 1.87789 1.51878 1.19481 0.97192 0.92700 1.02072 1.22063 0.91768 0.99938 0.97395 1.21446 1.01109 0.90553 0.96985 1.21476 0.92799 1.01952 0.95824 1.17772 0.96194 0.86970 0.96873 1.43339 1.18525 1.11560 1.35648 1.23388 1.03577 0.84619 1.05733 1.22884 0.92342 1.01852 1.02165 1.70318 1.26327 1.02997 1.24234 1.25564 0.90138 0.99160 0.96231 1.20735 0.99907 0.91288 0.99716 1.21994 0.96407 0.82170 0.96141 0.90345 1.23059 1.02466 0.94926 0.96860 1.20871 0.97912 0.91715 0.83239 1.44645 1.83229 1.04565 1.02711 1.19408 1.40831 0.86951 0.90097 0.89809 1.25688 1.02196 1.00592 0.97422 1.70165 1.55846 1.23661 1.10274 0.85124 0.78272 0.78304 0.77442 1.20569 1.22091 1.19860 1.21860 0.98283 0.84041 0.95051 0.89557 0.90328 0.88127 0.82011 0.80076 0.81573 0.76511 0.78818 0.76891 0.85715 0.91092 0.89232 0.97351 0.96359 0.94304 0.93367 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 7.46 127.77 0.95 1.96 16 2 N -0.59 -15.81 2.91 -818.21 -2.38 -18.19 16 3 C 0.55 15.90 7.35 86.79 0.64 16.54 16 4 O -0.58 -22.37 16.30 -3.91 -0.06 -22.44 16 5 C -0.11 -2.22 5.23 -20.10 -0.11 -2.33 16 6 C -0.09 -1.09 7.56 22.54 0.17 -0.91 16 7 C -0.08 -0.52 10.02 22.21 0.22 -0.30 16 8 C -0.10 -0.84 9.47 22.43 0.21 -0.63 16 9 C 0.11 1.75 6.63 38.03 0.25 2.00 16 10 N -0.41 -6.95 2.99 -350.51 -1.05 -8.00 16 11 C -0.04 -0.56 10.85 83.05 0.90 0.35 16 12 C -0.05 -0.80 11.85 83.52 0.99 0.19 16 13 N -0.52 -12.19 11.24 -199.71 -2.25 -14.44 16 14 C 0.17 3.53 11.91 180.00 2.14 5.68 16 15 C -0.10 -1.90 9.05 22.65 0.20 -1.69 16 16 C 0.14 4.93 3.45 46.38 0.16 5.09 16 17 H 0.08 3.30 7.02 -2.39 -0.02 3.29 16 18 C -0.13 -4.88 6.50 31.78 0.21 -4.67 16 19 C 0.19 9.25 5.37 86.73 0.47 9.71 16 20 N -0.62 -31.88 3.39 -691.99 -2.35 -34.22 16 21 C -0.24 -13.62 10.28 84.03 0.86 -12.76 16 22 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 24 N -0.95 -57.15 10.31 21.65 0.22 -56.93 16 25 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.13 5.33 6.79 86.86 0.59 5.92 16 30 H 0.09 1.07 6.89 -2.38 -0.02 1.05 16 31 H 0.08 1.45 6.39 -2.39 -0.02 1.43 16 32 H 0.10 1.18 5.82 -2.39 -0.01 1.17 16 33 H 0.16 1.34 5.29 -2.91 -0.02 1.32 16 34 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 35 H 0.17 0.32 6.80 -2.91 -0.02 0.30 16 36 H 0.22 0.76 7.14 -2.91 -0.02 0.74 16 37 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.21 3.79 7.06 -2.91 -0.02 3.77 16 39 H 0.12 2.74 6.76 -2.91 -0.02 2.72 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 2.76 6.45 -2.39 -0.02 2.75 16 42 H 0.01 0.46 7.38 -2.39 -0.02 0.45 16 43 H 0.02 0.98 7.50 -2.38 -0.02 0.97 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.05 1.70 6.98 -2.39 -0.02 1.69 16 46 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -81.11 369.32 4.51 -76.60 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.02 Total: 9.13 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 9.33 Total: 20.86 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -7.80 Total: -131.78 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -81.11 4.51 -76.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033552382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.244 kcal (2) G-P(sol) polarization free energy of solvation -81.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds