Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 120.00049 * 2 1 4 4 O 1.21557 * 119.99967 * 175.38372 * 3 2 1 5 5 C 1.47856 * 120.00108 * 355.38135 * 3 2 1 6 6 C 1.39614 * 120.11342 * 221.84424 * 5 3 2 7 7 C 1.37975 * 119.98530 * 179.71554 * 6 5 3 8 8 C 1.38267 * 120.21574 * 0.57787 * 7 6 5 9 9 C 1.38902 * 120.22703 * 359.68211 * 8 7 6 10 10 N 1.40258 * 119.99641 * 180.02562 * 9 8 7 11 11 C 1.37102 * 126.47092 * 0.02562 * 10 9 8 12 12 C 1.34654 * 106.83406 * 179.97438 * 11 10 9 13 13 N 1.34122 * 108.19580 * 0.02562 * 12 11 10 14 14 C 1.30521 * 109.35195 * 359.74140 * 13 12 11 15 15 C 1.38582 * 120.01102 * 0.03374 * 9 8 7 16 16 C 1.46502 * 119.99932 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.64128 * 178.31199 * 16 2 1 18 18 C 1.55161 * 110.87045 * 55.06702 * 16 2 1 19 19 C 1.55125 * 101.48525 * 205.89862 * 18 16 2 20 20 N 1.47423 * 104.72444 * 37.29536 * 19 18 16 21 21 C 1.36931 * 125.64826 * 155.82004 * 20 19 18 22 22 H 1.08008 * 119.99983 * 189.15513 * 21 20 19 23 23 C 1.38813 * 120.00507 * 9.15348 * 21 20 19 24 24 N 1.31615 * 120.00376 * 205.90326 * 23 21 20 25 25 Si 1.86803 * 119.99487 * 25.90439 * 23 21 20 26 26 H 1.48498 * 109.47421 * 270.00130 * 25 23 21 27 27 H 1.48494 * 109.47292 * 30.00130 * 25 23 21 28 28 H 1.48502 * 109.47048 * 149.99990 * 25 23 21 29 29 C 1.47021 * 108.70199 * 335.55094 * 20 19 18 30 30 H 1.09006 * 109.47524 * 275.44177 * 1 2 3 31 31 H 1.09000 * 109.47284 * 35.43928 * 1 2 3 32 32 H 1.08997 * 109.47258 * 155.44065 * 1 2 3 33 33 H 1.08000 * 120.00780 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.89386 * 180.27582 * 7 6 5 35 35 H 1.07996 * 119.88678 * 179.69181 * 8 7 6 36 36 H 1.07999 * 126.58370 * 0.02562 * 11 10 9 37 37 H 1.08003 * 125.90191 * 180.02562 * 12 11 10 38 38 H 1.08002 * 125.72113 * 180.24460 * 14 13 12 39 39 H 1.08006 * 120.10601 * 180.02562 * 15 9 8 40 40 H 1.09008 * 111.00141 * 324.13654 * 18 16 2 41 41 H 1.08993 * 111.00726 * 87.94617 * 18 16 2 42 42 H 1.09000 * 110.49745 * 278.44928 * 19 18 16 43 43 H 1.09003 * 110.34205 * 156.06014 * 19 18 16 44 44 H 0.97000 * 120.00192 * 354.96598 * 24 23 21 45 45 H 1.09002 * 109.88407 * 120.70513 * 29 20 19 46 46 H 1.08997 * 109.88404 * 241.87108 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1688 0.0847 5 6 1.4032 2.4456 -0.1031 6 6 1.8888 3.4693 -0.9188 7 6 1.1971 4.6591 -1.0176 8 6 0.0291 4.8465 -0.3017 9 6 -0.4592 3.8359 0.5167 10 7 -1.6447 4.0311 1.2404 11 6 -2.4242 5.1589 1.2389 12 6 -3.4592 4.9187 2.0660 13 7 -3.3203 3.6804 2.5621 14 6 -2.2402 3.1365 2.0712 15 6 0.2249 2.6350 0.6185 16 6 2.1975 -1.2688 0.0006 17 1 3.2725 -1.0918 -0.0296 18 6 1.7549 -2.1631 -1.1876 19 6 2.0758 -3.5801 -0.6440 20 7 1.7364 -3.5173 0.7893 21 6 1.4057 -4.5861 1.5787 22 1 1.0302 -4.4236 2.5782 23 6 1.5531 -5.8787 1.0944 24 7 0.8090 -6.8511 1.5769 25 14 2.8077 -6.2377 -0.2422 26 1 2.1716 -6.0769 -1.5744 27 1 3.9459 -5.2919 -0.1198 28 1 3.3031 -7.6300 -0.0951 29 6 1.8181 -2.1177 1.2322 30 1 -0.3634 0.0975 1.0231 31 1 -0.3634 0.8373 -0.5959 32 1 -0.3633 -0.9347 -0.4271 33 1 2.8034 3.3285 -1.4755 34 1 1.5717 5.4484 -1.6525 35 1 -0.5054 5.7817 -0.3791 36 1 -2.2433 6.0656 0.6807 37 1 -4.2625 5.6047 2.2912 38 1 -1.8789 2.1426 2.2907 39 1 -0.1537 1.8481 1.2540 40 1 0.6891 -2.0493 -1.3864 41 1 2.3419 -1.9460 -2.0799 42 1 3.1338 -3.8081 -0.7737 43 1 1.4615 -4.3270 -1.1469 44 1 0.2100 -6.6803 2.3205 45 1 0.8525 -1.7951 1.6216 46 1 2.5831 -2.0166 2.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033552383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = 110.765430 kcal Electronic energy + Delta-G solvation = -29101.450537 eV Core-core repulsion = 25187.060004 eV Total energy + Delta-G solvation = -3914.390533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72197 -40.72671 -39.04024 -37.63969 -35.22140 -34.51619 -32.68143 -31.76987 -30.23955 -29.62622 -29.42857 -28.24725 -27.11627 -24.78606 -24.01839 -23.63468 -22.00200 -21.13366 -20.94813 -20.44852 -19.46894 -18.47180 -17.50541 -17.31432 -16.80449 -16.38945 -16.00853 -15.83509 -15.23525 -14.98502 -14.94029 -14.48878 -14.32551 -14.08732 -13.80612 -13.56100 -13.46335 -13.41605 -13.20018 -13.10765 -12.52311 -12.44926 -12.34591 -11.84778 -11.78042 -11.42107 -11.18968 -11.08700 -11.04795 -10.73997 -10.45660 -10.11502 -9.99007 -9.62110 -9.55205 -9.30112 -9.16281 -8.78102 -8.66780 -8.50592 -7.13077 -6.36383 -3.22159 0.25892 0.48054 1.78602 2.16760 2.49961 2.74645 2.78799 3.25001 3.38416 3.51234 3.65310 3.93579 4.09134 4.27391 4.34780 4.43421 4.56618 4.59174 4.63771 4.87788 4.92246 4.97572 5.03342 5.06108 5.12460 5.18284 5.19897 5.33265 5.35822 5.39761 5.47491 5.60869 5.69389 5.77368 5.78566 5.89486 5.92345 6.06371 6.15328 6.25874 6.30786 6.43142 6.49495 6.65493 6.69157 6.78763 7.25063 7.60271 7.64119 7.94902 8.30412 9.00171 9.54899 10.20633 11.12771 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002750 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.504366 B =10177.875560 C =11589.268363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.557 3.443 4 O -0.529 6.529 5 C -0.092 4.092 6 C -0.073 4.073 7 C -0.096 4.096 8 C -0.115 4.115 9 C 0.128 3.872 10 N -0.411 5.411 11 C -0.056 4.056 12 C -0.021 4.021 13 N -0.483 5.483 14 C 0.192 3.808 15 C -0.107 4.107 16 C 0.125 3.875 17 H 0.109 0.891 18 C -0.139 4.139 19 C 0.104 3.896 20 N -0.606 5.606 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.020 4.020 24 N -0.919 5.919 25 Si 1.063 2.937 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.298 1.298 29 C 0.130 3.870 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.209 0.791 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.263 0.737 45 H 0.033 0.967 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 27.472 -7.340 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.344 3.656 4 O -0.407 6.407 5 C -0.095 4.095 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.134 4.134 9 C 0.035 3.965 10 N -0.090 5.090 11 C -0.186 4.186 12 C -0.167 4.167 13 N -0.199 5.199 14 C -0.089 4.089 15 C -0.127 4.127 16 C 0.022 3.978 17 H 0.127 0.873 18 C -0.178 4.178 19 C -0.021 4.021 20 N -0.334 5.334 21 C -0.456 4.456 22 H 0.095 0.905 23 C -0.220 4.220 24 N -0.560 5.560 25 Si 0.895 3.105 26 H -0.222 1.222 27 H -0.213 1.213 28 H -0.226 1.226 29 C 0.003 3.997 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.226 0.774 39 H 0.162 0.838 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.031 25.805 -7.648 27.085 hybrid contribution -0.143 1.644 0.582 1.749 sum -3.174 27.449 -7.066 28.521 Atomic orbital electron populations 1.22108 0.79617 1.04112 1.01643 1.47737 1.07097 1.05680 1.71803 1.18210 0.87071 0.83292 0.76983 1.90811 1.13322 1.86962 1.49558 1.19784 0.94975 0.95404 0.99376 1.21315 0.99450 0.91690 0.96788 1.21010 0.94086 0.97526 0.98854 1.21024 0.97416 0.98243 0.96762 1.17655 0.86999 0.95659 0.96160 1.43253 1.17881 1.13862 1.34026 1.22757 0.95460 0.92796 1.07550 1.22403 1.00013 0.94886 0.99428 1.70373 1.16479 1.08596 1.24479 1.25368 0.92064 0.97664 0.93812 1.21244 0.94497 0.96259 1.00710 1.22305 0.97449 0.81227 0.96813 0.87281 1.23165 1.01635 0.96196 0.96835 1.22077 0.98660 0.94967 0.86434 1.44772 1.81997 1.02141 1.04490 1.20026 1.41462 0.84699 0.99428 0.90550 1.25825 1.01018 0.91123 1.04061 1.70911 1.23824 1.35500 1.25732 0.83889 0.76764 0.74742 0.75102 1.22158 1.21265 1.22631 1.21545 0.98584 0.85715 0.93846 0.92261 0.91009 0.89473 0.84223 0.84142 0.84757 0.80486 0.80785 0.77430 0.83827 0.90660 0.91063 0.94708 0.91672 0.92668 0.94879 0.95072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 7.69 59.84 0.46 1.17 16 2 N -0.59 -7.95 2.89 -172.94 -0.50 -8.45 16 3 C 0.56 7.60 7.32 -12.33 -0.09 7.51 16 4 O -0.53 -9.06 16.33 5.32 0.09 -8.97 16 5 C -0.09 -0.94 5.13 -104.99 -0.54 -1.48 16 6 C -0.07 -0.62 9.65 -39.16 -0.38 -1.00 16 7 C -0.10 -0.59 10.02 -39.67 -0.40 -0.99 16 8 C -0.11 -0.73 9.47 -39.32 -0.37 -1.11 16 9 C 0.13 1.04 6.63 -83.63 -0.55 0.49 16 10 N -0.41 -3.57 2.99 -62.13 -0.19 -3.76 16 11 C -0.06 -0.42 10.85 -16.46 -0.18 -0.60 16 12 C -0.02 -0.19 11.85 -17.82 -0.21 -0.40 16 13 N -0.48 -5.54 11.24 -14.48 -0.16 -5.70 16 14 C 0.19 1.87 11.91 -89.63 -1.07 0.80 16 15 C -0.11 -0.95 7.05 -39.00 -0.28 -1.22 16 16 C 0.13 2.06 3.34 -66.09 -0.22 1.84 16 17 H 0.11 1.92 7.01 -51.93 -0.36 1.56 16 18 C -0.14 -2.25 6.61 -24.46 -0.16 -2.41 16 19 C 0.10 2.19 4.69 -2.41 -0.01 2.18 16 20 N -0.61 -14.53 3.30 -169.94 -0.56 -15.09 16 21 C -0.33 -9.28 10.44 -15.06 -0.16 -9.44 16 22 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 23 C -0.02 -0.57 5.42 -17.43 -0.09 -0.67 16 24 N -0.92 -28.49 13.70 55.49 0.76 -27.72 16 25 Si 1.06 26.30 24.69 -169.99 -4.20 22.11 16 26 H -0.29 -6.79 6.52 56.52 0.37 -6.42 16 27 H -0.29 -6.74 6.16 56.52 0.35 -6.39 16 28 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 29 C 0.13 2.58 6.88 -3.06 -0.02 2.56 16 30 H 0.06 0.56 6.79 -51.93 -0.35 0.20 16 31 H 0.07 0.61 6.03 -51.93 -0.31 0.30 16 32 H 0.09 0.99 6.14 -51.93 -0.32 0.67 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 35 H 0.13 0.55 6.80 -52.49 -0.36 0.19 16 36 H 0.18 0.73 7.14 -52.49 -0.37 0.36 16 37 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.21 1.52 7.06 -52.49 -0.37 1.15 16 39 H 0.14 1.17 4.28 -52.48 -0.22 0.94 16 40 H 0.07 1.13 6.16 -51.92 -0.32 0.81 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.75 5.73 -51.93 -0.30 0.45 16 43 H 0.07 1.45 5.88 -51.93 -0.31 1.14 16 44 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 45 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -35.67 363.27 -9.30 -44.97 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.74 Total: -0.08 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.27 Total: -2.77 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.65 Total: -60.73 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.20 Total: 22.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.67 -9.30 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033552383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.734 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds