Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 120.00049 * 2 1 4 4 O 1.21557 * 119.99967 * 175.38372 * 3 2 1 5 5 C 1.47856 * 120.00108 * 355.38135 * 3 2 1 6 6 C 1.39614 * 120.11342 * 221.84424 * 5 3 2 7 7 C 1.37975 * 119.98530 * 179.71554 * 6 5 3 8 8 C 1.38267 * 120.21574 * 0.57787 * 7 6 5 9 9 C 1.38902 * 120.22703 * 359.68211 * 8 7 6 10 10 N 1.40258 * 119.99641 * 180.02562 * 9 8 7 11 11 C 1.37102 * 126.47092 * 0.02562 * 10 9 8 12 12 C 1.34654 * 106.83406 * 179.97438 * 11 10 9 13 13 N 1.34122 * 108.19580 * 0.02562 * 12 11 10 14 14 C 1.30521 * 109.35195 * 359.74140 * 13 12 11 15 15 C 1.38582 * 120.01102 * 0.03374 * 9 8 7 16 16 C 1.46502 * 119.99932 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.64128 * 178.31199 * 16 2 1 18 18 C 1.55161 * 110.87045 * 55.06702 * 16 2 1 19 19 C 1.55125 * 101.48525 * 205.89862 * 18 16 2 20 20 N 1.47423 * 104.72444 * 37.29536 * 19 18 16 21 21 C 1.36931 * 125.64826 * 155.82004 * 20 19 18 22 22 H 1.08008 * 119.99983 * 189.15513 * 21 20 19 23 23 C 1.38813 * 120.00507 * 9.15348 * 21 20 19 24 24 N 1.31615 * 120.00376 * 205.90326 * 23 21 20 25 25 Si 1.86803 * 119.99487 * 25.90439 * 23 21 20 26 26 H 1.48498 * 109.47421 * 270.00130 * 25 23 21 27 27 H 1.48494 * 109.47292 * 30.00130 * 25 23 21 28 28 H 1.48502 * 109.47048 * 149.99990 * 25 23 21 29 29 C 1.47021 * 108.70199 * 335.55094 * 20 19 18 30 30 H 1.09006 * 109.47524 * 275.44177 * 1 2 3 31 31 H 1.09000 * 109.47284 * 35.43928 * 1 2 3 32 32 H 1.08997 * 109.47258 * 155.44065 * 1 2 3 33 33 H 1.08000 * 120.00780 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.89386 * 180.27582 * 7 6 5 35 35 H 1.07996 * 119.88678 * 179.69181 * 8 7 6 36 36 H 1.07999 * 126.58370 * 0.02562 * 11 10 9 37 37 H 1.08003 * 125.90191 * 180.02562 * 12 11 10 38 38 H 1.08002 * 125.72113 * 180.24460 * 14 13 12 39 39 H 1.08006 * 120.10601 * 180.02562 * 15 9 8 40 40 H 1.09008 * 111.00141 * 324.13654 * 18 16 2 41 41 H 1.08993 * 111.00726 * 87.94617 * 18 16 2 42 42 H 1.09000 * 110.49745 * 278.44928 * 19 18 16 43 43 H 1.09003 * 110.34205 * 156.06014 * 19 18 16 44 44 H 0.97000 * 120.00192 * 354.96598 * 24 23 21 45 45 H 1.09002 * 109.88407 * 120.70513 * 29 20 19 46 46 H 1.08997 * 109.88404 * 241.87108 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1688 0.0847 5 6 1.4032 2.4456 -0.1031 6 6 1.8888 3.4693 -0.9188 7 6 1.1971 4.6591 -1.0176 8 6 0.0291 4.8465 -0.3017 9 6 -0.4592 3.8359 0.5167 10 7 -1.6447 4.0311 1.2404 11 6 -2.4242 5.1589 1.2389 12 6 -3.4592 4.9187 2.0660 13 7 -3.3203 3.6804 2.5621 14 6 -2.2402 3.1365 2.0712 15 6 0.2249 2.6350 0.6185 16 6 2.1975 -1.2688 0.0006 17 1 3.2725 -1.0918 -0.0296 18 6 1.7549 -2.1631 -1.1876 19 6 2.0758 -3.5801 -0.6440 20 7 1.7364 -3.5173 0.7893 21 6 1.4057 -4.5861 1.5787 22 1 1.0302 -4.4236 2.5782 23 6 1.5531 -5.8787 1.0944 24 7 0.8090 -6.8511 1.5769 25 14 2.8077 -6.2377 -0.2422 26 1 2.1716 -6.0769 -1.5744 27 1 3.9459 -5.2919 -0.1198 28 1 3.3031 -7.6300 -0.0951 29 6 1.8181 -2.1177 1.2322 30 1 -0.3634 0.0975 1.0231 31 1 -0.3634 0.8373 -0.5959 32 1 -0.3633 -0.9347 -0.4271 33 1 2.8034 3.3285 -1.4755 34 1 1.5717 5.4484 -1.6525 35 1 -0.5054 5.7817 -0.3791 36 1 -2.2433 6.0656 0.6807 37 1 -4.2625 5.6047 2.2912 38 1 -1.8789 2.1426 2.2907 39 1 -0.1537 1.8481 1.2540 40 1 0.6891 -2.0493 -1.3864 41 1 2.3419 -1.9460 -2.0799 42 1 3.1338 -3.8081 -0.7737 43 1 1.4615 -4.3270 -1.1469 44 1 0.2100 -6.6803 2.3205 45 1 0.8525 -1.7951 1.6216 46 1 2.5831 -2.0166 2.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033552383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = 88.673025 kcal Electronic energy + Delta-G solvation = -29102.408536 eV Core-core repulsion = 25187.060004 eV Total energy + Delta-G solvation = -3915.348531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34251 -41.69440 -39.96193 -38.98357 -36.53425 -35.17459 -34.49151 -32.75486 -31.23674 -30.82880 -30.14345 -29.69156 -28.12135 -26.18473 -24.90261 -24.62498 -22.94470 -22.57615 -21.75084 -21.45348 -20.58075 -19.56159 -19.28679 -18.34444 -17.53191 -17.37578 -16.98928 -16.64820 -16.49026 -16.07765 -15.83260 -15.53342 -15.38373 -15.29127 -14.95989 -14.70704 -14.58787 -14.34797 -14.29276 -13.96259 -13.91079 -13.60499 -13.20282 -13.01547 -12.99026 -12.94957 -12.60340 -12.48133 -12.34123 -11.80040 -11.75473 -11.45595 -11.32807 -11.13605 -11.11410 -10.66892 -10.16319 -9.85692 -9.75335 -9.35728 -9.19006 -8.66359 -5.45088 -0.35862 -0.12291 1.16701 1.39504 1.51899 1.54007 1.60463 1.69352 1.77207 2.09441 2.50710 2.61095 3.02965 3.15655 3.38072 3.53148 3.63028 3.67641 3.74401 3.80140 3.90371 3.99348 4.06439 4.08756 4.10972 4.29790 4.36734 4.37338 4.43654 4.53006 4.61532 4.66699 4.72632 4.75499 4.81950 4.82268 4.91148 4.95025 5.11306 5.12723 5.22822 5.32147 5.39509 5.53458 5.54285 5.73415 6.08037 6.17904 6.20018 6.79866 6.89689 6.97184 7.43596 8.08486 8.83382 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.002750 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.504366 B =10177.875560 C =11589.268363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.591 5.591 3 C 0.558 3.442 4 O -0.571 6.571 5 C -0.110 4.110 6 C -0.077 4.077 7 C -0.084 4.084 8 C -0.101 4.101 9 C 0.118 3.882 10 N -0.412 5.412 11 C -0.044 4.044 12 C -0.047 4.047 13 N -0.523 5.523 14 C 0.174 3.826 15 C -0.109 4.109 16 C 0.139 3.861 17 H 0.099 0.901 18 C -0.122 4.122 19 C 0.094 3.906 20 N -0.625 5.625 21 C -0.320 4.320 22 H 0.043 0.957 23 C -0.074 4.074 24 N -0.953 5.953 25 Si 1.103 2.897 26 H -0.265 1.265 27 H -0.270 1.270 28 H -0.306 1.306 29 C 0.129 3.871 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.176 0.824 35 H 0.166 0.834 36 H 0.216 0.784 37 H 0.192 0.808 38 H 0.219 0.781 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.038 0.962 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 31.246 -10.176 33.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.348 3.652 4 O -0.451 6.451 5 C -0.114 4.114 6 C -0.097 4.097 7 C -0.102 4.102 8 C -0.121 4.121 9 C 0.025 3.975 10 N -0.090 5.090 11 C -0.173 4.173 12 C -0.192 4.192 13 N -0.240 5.240 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.035 3.965 17 H 0.117 0.883 18 C -0.161 4.161 19 C -0.030 4.030 20 N -0.353 5.353 21 C -0.448 4.448 22 H 0.061 0.939 23 C -0.268 4.268 24 N -0.597 5.597 25 Si 0.929 3.071 26 H -0.191 1.191 27 H -0.195 1.195 28 H -0.235 1.235 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.193 0.807 35 H 0.183 0.817 36 H 0.233 0.767 37 H 0.209 0.791 38 H 0.236 0.764 39 H 0.161 0.839 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -2.982 29.639 -10.500 31.585 hybrid contribution -0.222 0.634 1.568 1.705 sum -3.204 30.272 -8.932 31.725 Atomic orbital electron populations 1.22291 0.77731 1.04796 1.02778 1.47713 1.08112 1.04647 1.71669 1.18730 0.86720 0.84187 0.75600 1.90782 1.15244 1.87621 1.51475 1.19505 0.95826 0.94316 1.01736 1.21487 0.99697 0.92115 0.96375 1.21357 0.93313 0.97152 0.98423 1.21437 0.97100 0.98640 0.94914 1.17778 0.86920 0.95982 0.96776 1.43327 1.18012 1.13984 1.33725 1.23346 0.94204 0.93246 1.06535 1.22846 1.01480 0.94608 1.00281 1.70325 1.17678 1.10178 1.25849 1.25610 0.92185 0.98472 0.94424 1.21186 0.94162 0.96970 1.00560 1.21896 0.97292 0.82246 0.95060 0.88319 1.23090 1.03201 0.92481 0.97311 1.22237 0.98383 0.97857 0.84571 1.44817 1.82061 1.02579 1.05885 1.19901 1.39914 0.86402 0.98598 0.93879 1.27065 1.02078 0.91163 1.06540 1.71024 1.25500 1.36510 1.26664 0.83370 0.75091 0.74339 0.74261 1.19057 1.19544 1.23491 1.21624 0.98284 0.84489 0.95356 0.91379 0.88532 0.90100 0.84218 0.80682 0.81657 0.76738 0.79111 0.76436 0.83867 0.89155 0.88000 0.94510 0.92728 0.94203 0.94384 0.96732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 7.69 127.77 0.98 2.25 16 2 N -0.59 -15.12 2.89 -819.34 -2.36 -17.49 16 3 C 0.56 14.66 7.32 86.79 0.64 15.29 16 4 O -0.57 -19.39 16.33 -3.90 -0.06 -19.45 16 5 C -0.11 -2.06 5.13 -20.10 -0.10 -2.16 16 6 C -0.08 -1.09 9.65 22.54 0.22 -0.87 16 7 C -0.08 -0.65 10.02 22.21 0.22 -0.42 16 8 C -0.10 -0.81 9.47 22.44 0.21 -0.60 16 9 C 0.12 1.55 6.63 38.03 0.25 1.80 16 10 N -0.41 -6.11 2.99 -350.49 -1.05 -7.16 16 11 C -0.04 -0.52 10.85 83.05 0.90 0.38 16 12 C -0.05 -0.77 11.85 83.52 0.99 0.22 16 13 N -0.52 -11.74 11.24 -199.71 -2.25 -13.98 16 14 C 0.17 3.23 11.91 180.00 2.14 5.37 16 15 C -0.11 -1.71 7.05 22.65 0.16 -1.55 16 16 C 0.14 4.45 3.34 46.18 0.15 4.60 16 17 H 0.10 3.41 7.01 -2.39 -0.02 3.40 16 18 C -0.12 -3.65 6.61 32.06 0.21 -3.44 16 19 C 0.09 3.82 4.69 86.93 0.41 4.23 16 20 N -0.63 -30.20 3.30 -691.56 -2.28 -32.48 16 21 C -0.32 -18.62 10.44 84.03 0.88 -17.74 16 22 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 23 C -0.07 -4.42 5.42 84.86 0.46 -3.96 16 24 N -0.95 -61.17 13.70 21.65 0.30 -60.87 16 25 Si 1.10 53.20 24.69 68.60 1.69 54.90 16 26 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 27 H -0.27 -12.14 6.16 99.48 0.61 -11.53 16 28 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 29 C 0.13 5.16 6.88 86.73 0.60 5.76 16 30 H 0.07 1.20 6.79 -2.38 -0.02 1.18 16 31 H 0.10 1.41 6.03 -2.39 -0.01 1.40 16 32 H 0.08 1.69 6.14 -2.39 -0.01 1.68 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.17 0.30 6.80 -2.91 -0.02 0.28 16 36 H 0.22 0.66 7.14 -2.91 -0.02 0.64 16 37 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.22 3.14 7.06 -2.91 -0.02 3.12 16 39 H 0.14 2.15 4.28 -2.91 -0.01 2.14 16 40 H 0.09 2.45 6.16 -2.38 -0.01 2.44 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.04 1.51 5.73 -2.39 -0.01 1.49 16 43 H 0.05 2.34 5.88 -2.39 -0.01 2.32 16 44 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 45 H 0.04 1.48 7.07 -2.39 -0.02 1.46 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -81.53 363.27 4.14 -77.39 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.83 Total: 9.99 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 9.32 Total: 9.17 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.64 Total: -131.99 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.45 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 1.69 Total: 54.90 kcal Total: -81.53 4.14 -77.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033552383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.059 kcal (2) G-P(sol) polarization free energy of solvation -81.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds