Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00149 * 2 1 4 4 O 1.21591 * 119.99629 * 175.85019 * 3 2 1 5 5 C 1.47582 * 119.99923 * 355.84312 * 3 2 1 6 6 C 1.39812 * 120.00493 * 221.60306 * 5 3 2 7 7 C 1.36584 * 119.99472 * 179.76830 * 6 5 3 8 8 C 1.39775 * 120.00280 * 0.51149 * 7 6 5 9 9 C 1.47660 * 119.99478 * 179.76260 * 8 7 6 10 10 C 1.36239 * 126.77625 * 180.02562 * 9 8 7 11 11 N 1.33684 * 107.86214 * 180.02562 * 10 9 8 12 12 C 1.30654 * 109.57379 * 0.02562 * 11 10 9 13 13 N 1.34961 * 109.03263 * 359.73019 * 12 11 10 14 14 H 0.96997 * 126.46173 * 180.27296 * 13 12 11 15 15 C 1.39779 * 120.00782 * 359.74385 * 8 7 6 16 16 C 1.36583 * 120.00549 * 359.97438 * 15 8 7 17 17 C 1.46501 * 119.99783 * 179.97438 * 2 1 3 18 18 H 1.09000 * 110.64324 * 181.68722 * 17 2 1 19 19 C 1.55156 * 110.87476 * 304.93562 * 17 2 1 20 20 C 1.55130 * 101.48820 * 82.76698 * 19 17 2 21 21 N 1.47426 * 104.72067 * 37.29497 * 20 19 17 22 22 C 1.36939 * 125.64708 * 155.81613 * 21 20 19 23 23 H 1.07998 * 119.99830 * 179.97438 * 22 21 20 24 24 C 1.38812 * 119.99963 * 359.69696 * 22 21 20 25 25 N 1.31614 * 119.99988 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99931 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47068 * 90.00080 * 26 24 22 28 28 H 1.48490 * 109.47344 * 209.99968 * 26 24 22 29 29 H 1.48494 * 109.47206 * 330.00498 * 26 24 22 30 30 C 1.47022 * 108.70484 * 335.55602 * 21 20 19 31 31 H 1.09003 * 109.46797 * 270.82827 * 1 2 3 32 32 H 1.08993 * 109.46949 * 30.82941 * 1 2 3 33 33 H 1.08998 * 109.47513 * 150.83055 * 1 2 3 34 34 H 1.08003 * 120.00060 * 0.02874 * 6 5 3 35 35 H 1.07997 * 119.99360 * 180.23661 * 7 6 5 36 36 H 1.08000 * 126.06872 * 0.02562 * 10 9 8 37 37 H 1.08001 * 125.48419 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.99698 * 179.97438 * 15 8 7 39 39 H 1.08000 * 119.99935 * 180.02562 * 16 15 8 40 40 H 1.09001 * 111.01073 * 201.00489 * 19 17 2 41 41 H 1.09001 * 111.00408 * 324.85881 * 19 17 2 42 42 H 1.09008 * 110.49766 * 278.45694 * 20 19 17 43 43 H 1.08994 * 110.34533 * 156.06360 * 20 19 17 44 44 H 0.96998 * 120.00161 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.88317 * 120.69895 * 30 21 20 46 46 H 1.08998 * 109.88094 * 241.86789 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3524 1.1684 0.0762 5 6 1.4039 2.4436 -0.0926 6 6 1.8892 3.4724 -0.9055 7 6 1.2063 4.6519 -0.9948 8 6 0.0281 4.8343 -0.2653 9 6 -0.7072 6.1115 -0.3578 10 6 -1.8616 6.4367 0.2885 11 7 -2.1945 7.6813 -0.0682 12 6 -1.3068 8.1492 -0.9049 13 7 -0.3590 7.2108 -1.1113 14 1 0.4194 7.2940 -1.6839 15 6 -0.4543 3.8078 0.5516 16 6 0.2252 2.6261 0.6367 17 6 2.1975 -1.2688 0.0006 18 1 3.2726 -1.0918 0.0305 19 6 1.7549 -2.1621 1.1894 20 6 0.4728 -2.8231 0.6187 21 7 0.7774 -3.0654 -0.8033 22 6 0.1850 -4.0115 -1.5964 23 1 0.4792 -4.1100 -2.6309 24 6 -0.7894 -4.8478 -1.0693 25 7 -1.1443 -4.7311 0.1927 26 14 -1.5981 -6.1380 -2.1514 27 1 -0.8241 -7.4031 -2.0760 28 1 -2.9862 -6.3783 -1.6821 29 1 -1.6266 -5.6583 -3.5565 30 6 1.8182 -2.1188 -1.2304 31 1 -0.3633 0.0149 1.0276 32 1 -0.3633 0.8824 -0.5266 33 1 -0.3634 -0.8973 -0.5009 34 1 2.8018 3.3329 -1.4661 35 1 1.5792 5.4452 -1.6256 36 1 -2.4102 5.8018 0.9684 37 1 -1.3255 9.1308 -1.3549 38 1 -1.3646 3.9491 1.1156 39 1 -0.1479 1.8328 1.2675 40 1 2.5140 -2.9094 1.4205 41 1 1.5235 -1.5583 2.0669 42 1 -0.3790 -2.1497 0.7147 43 1 0.2724 -3.7649 1.1295 44 1 -1.8250 -5.3157 0.5612 45 1 2.6916 -2.6644 -1.5875 46 1 1.4320 -1.4751 -2.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033553412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 97.723352 kcal Electronic energy + Delta-G solvation = -28817.446700 eV Core-core repulsion = 24902.490620 eV Total energy + Delta-G solvation = -3914.956080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38691 -40.48152 -38.75802 -37.32126 -34.58413 -33.25689 -32.56344 -31.99233 -31.24788 -29.35913 -28.63743 -27.95484 -26.28865 -24.75749 -23.84969 -23.23237 -21.72887 -21.25818 -20.59803 -20.18872 -19.09694 -18.75230 -17.38689 -16.96966 -16.35547 -15.84991 -15.62531 -15.39623 -14.90552 -14.76955 -14.67660 -14.25735 -14.04582 -13.89340 -13.78980 -13.61221 -13.15739 -12.94878 -12.80560 -12.33462 -12.18037 -11.95798 -11.80859 -11.61760 -11.25932 -11.10920 -10.93642 -10.84845 -10.52510 -10.44864 -10.35351 -10.16147 -9.93214 -9.86936 -9.59121 -9.52525 -9.30845 -8.70188 -8.34609 -8.13116 -6.89904 -5.70894 -3.13165 0.32296 1.14633 1.83023 2.61810 2.68767 2.91542 3.18771 3.36714 3.42349 3.43672 3.65326 4.16055 4.38401 4.43514 4.44727 4.56762 4.59327 4.91519 5.01344 5.06988 5.17700 5.34905 5.39342 5.40630 5.48046 5.51379 5.58852 5.67508 5.70965 5.79731 5.85768 5.99449 6.13365 6.17367 6.19333 6.27027 6.28635 6.33249 6.52644 6.53320 6.55943 6.67009 6.90235 6.98046 7.40990 7.57298 7.62297 7.63050 7.79868 8.28295 8.30775 9.16285 9.76631 10.40724 11.32459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002389 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.364949 B =11719.246344 C =12662.470703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.584 5.584 3 C 0.554 3.446 4 O -0.546 6.546 5 C -0.120 4.120 6 C -0.059 4.059 7 C -0.128 4.128 8 C 0.004 3.996 9 C 0.010 3.990 10 C 0.005 3.995 11 N -0.494 5.494 12 C 0.193 3.807 13 N -0.564 5.564 14 H 0.421 0.579 15 C -0.108 4.108 16 C -0.079 4.079 17 C 0.124 3.876 18 H 0.100 0.900 19 C -0.154 4.154 20 C 0.144 3.856 21 N -0.603 5.603 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.127 3.873 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.176 0.824 37 H 0.211 0.789 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.107 0.893 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 22.648 -0.320 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.315 5.315 3 C 0.342 3.658 4 O -0.425 6.425 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.147 4.147 8 C 0.003 3.997 9 C -0.105 4.105 10 C -0.145 4.145 11 N -0.212 5.212 12 C -0.090 4.090 13 N -0.168 5.168 14 H 0.259 0.741 15 C -0.127 4.127 16 C -0.097 4.097 17 C 0.021 3.979 18 H 0.118 0.882 19 C -0.194 4.194 20 C 0.019 3.981 21 N -0.329 5.329 22 C -0.351 4.351 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.570 5.570 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.208 1.208 30 C 0.000 4.000 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.193 0.807 37 H 0.227 0.773 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.714 22.897 0.016 22.961 hybrid contribution 0.569 -0.947 -1.209 1.638 sum 2.284 21.950 -1.193 22.101 Atomic orbital electron populations 1.22402 0.79111 1.04762 1.01719 1.47728 1.07443 1.05363 1.70967 1.18298 0.87051 0.83614 0.76846 1.90762 1.13531 1.87322 1.50857 1.20055 0.96525 0.95066 1.00638 1.20791 0.98890 0.91521 0.96547 1.20702 0.95322 0.97943 1.00734 1.18047 0.93923 0.90521 0.97224 1.19704 0.99640 0.89282 1.01829 1.22493 0.95291 0.93779 1.02934 1.70188 1.26862 1.10476 1.13721 1.25064 0.87148 0.96495 1.00253 1.43337 1.23300 1.12934 1.37184 0.74059 1.20767 1.00666 0.92219 0.99016 1.21322 0.92972 0.97631 0.97795 1.22187 0.96452 0.81919 0.97316 0.88167 1.23389 1.01606 0.98231 0.96144 1.22196 0.90441 1.00746 0.84695 1.44548 1.42899 1.37425 1.08071 1.19066 1.14954 1.08215 0.92851 0.90526 1.24769 0.99411 0.99829 0.96506 1.69780 1.34266 1.40944 1.12029 0.86079 0.78577 0.81559 0.79314 1.21604 1.21647 1.20781 1.21643 0.92888 0.91398 0.94058 0.92485 0.91496 0.87781 0.84899 0.86255 0.80730 0.77270 0.84713 0.84072 0.90903 0.92029 0.96023 0.87545 0.93695 0.94843 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 7.04 59.85 0.42 1.36 16 2 N -0.58 -9.57 2.83 -173.04 -0.49 -10.06 16 3 C 0.55 8.95 7.31 -12.45 -0.09 8.86 16 4 O -0.55 -10.39 16.32 5.29 0.09 -10.31 16 5 C -0.12 -1.55 5.14 -104.91 -0.54 -2.09 16 6 C -0.06 -0.66 9.59 -39.59 -0.38 -1.04 16 7 C -0.13 -1.17 9.65 -39.60 -0.38 -1.55 16 8 C 0.00 0.04 5.88 -104.90 -0.62 -0.57 16 9 C 0.01 0.09 6.96 -82.08 -0.57 -0.48 16 10 C 0.00 0.05 11.28 -17.46 -0.20 -0.15 16 11 N -0.49 -5.09 11.22 -14.38 -0.16 -5.25 16 12 C 0.19 1.33 13.02 -90.32 -1.18 0.16 16 13 N -0.56 -3.61 6.06 -10.65 -0.06 -3.68 16 14 H 0.42 1.42 8.20 -40.82 -0.33 1.08 16 15 C -0.11 -1.01 9.52 -39.60 -0.38 -1.38 16 16 C -0.08 -0.85 7.48 -39.59 -0.30 -1.15 16 17 C 0.12 2.27 3.57 -66.09 -0.24 2.03 16 18 H 0.10 1.84 6.99 -51.93 -0.36 1.47 16 19 C -0.15 -2.87 6.55 -24.46 -0.16 -3.03 16 20 C 0.14 3.24 5.03 -2.41 -0.01 3.23 16 21 N -0.60 -14.61 2.98 -169.93 -0.51 -15.12 16 22 C -0.22 -5.96 10.27 -15.06 -0.15 -6.11 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -25.69 10.08 55.49 0.56 -25.13 16 26 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 30 C 0.13 2.62 6.25 -3.06 -0.02 2.60 16 31 H 0.06 0.77 7.00 -51.93 -0.36 0.40 16 32 H 0.07 0.86 5.69 -51.93 -0.30 0.57 16 33 H 0.10 1.93 5.14 -51.93 -0.27 1.66 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.12 0.75 7.27 -52.49 -0.38 0.37 16 36 H 0.18 1.36 7.30 -52.49 -0.38 0.98 16 37 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.96 7.04 -52.48 -0.37 0.59 16 39 H 0.14 1.42 5.68 -52.49 -0.30 1.12 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.50 5.54 -51.92 -0.29 0.21 16 43 H 0.11 2.77 5.86 -51.93 -0.30 2.47 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -33.40 366.80 -10.68 -44.08 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.72 Total: 3.17 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -4.88 Total: 0.31 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.66 Total: -59.23 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.40 -10.68 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033553412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.800 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds