Wall clock time and date at job start Sat Apr 11 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00149 * 2 1 4 4 O 1.21591 * 119.99629 * 175.85019 * 3 2 1 5 5 C 1.47582 * 119.99923 * 355.84312 * 3 2 1 6 6 C 1.39812 * 120.00493 * 221.60306 * 5 3 2 7 7 C 1.36584 * 119.99472 * 179.76830 * 6 5 3 8 8 C 1.39775 * 120.00280 * 0.51149 * 7 6 5 9 9 C 1.47660 * 119.99478 * 179.76260 * 8 7 6 10 10 C 1.36239 * 126.77625 * 180.02562 * 9 8 7 11 11 N 1.33684 * 107.86214 * 180.02562 * 10 9 8 12 12 C 1.30654 * 109.57379 * 0.02562 * 11 10 9 13 13 N 1.34961 * 109.03263 * 359.73019 * 12 11 10 14 14 H 0.96997 * 126.46173 * 180.27296 * 13 12 11 15 15 C 1.39779 * 120.00782 * 359.74385 * 8 7 6 16 16 C 1.36583 * 120.00549 * 359.97438 * 15 8 7 17 17 C 1.46501 * 119.99783 * 179.97438 * 2 1 3 18 18 H 1.09000 * 110.64324 * 181.68722 * 17 2 1 19 19 C 1.55156 * 110.87476 * 304.93562 * 17 2 1 20 20 C 1.55130 * 101.48820 * 82.76698 * 19 17 2 21 21 N 1.47426 * 104.72067 * 37.29497 * 20 19 17 22 22 C 1.36939 * 125.64708 * 155.81613 * 21 20 19 23 23 H 1.07998 * 119.99830 * 179.97438 * 22 21 20 24 24 C 1.38812 * 119.99963 * 359.69696 * 22 21 20 25 25 N 1.31614 * 119.99988 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99931 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47068 * 90.00080 * 26 24 22 28 28 H 1.48490 * 109.47344 * 209.99968 * 26 24 22 29 29 H 1.48494 * 109.47206 * 330.00498 * 26 24 22 30 30 C 1.47022 * 108.70484 * 335.55602 * 21 20 19 31 31 H 1.09003 * 109.46797 * 270.82827 * 1 2 3 32 32 H 1.08993 * 109.46949 * 30.82941 * 1 2 3 33 33 H 1.08998 * 109.47513 * 150.83055 * 1 2 3 34 34 H 1.08003 * 120.00060 * 0.02874 * 6 5 3 35 35 H 1.07997 * 119.99360 * 180.23661 * 7 6 5 36 36 H 1.08000 * 126.06872 * 0.02562 * 10 9 8 37 37 H 1.08001 * 125.48419 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.99698 * 179.97438 * 15 8 7 39 39 H 1.08000 * 119.99935 * 180.02562 * 16 15 8 40 40 H 1.09001 * 111.01073 * 201.00489 * 19 17 2 41 41 H 1.09001 * 111.00408 * 324.85881 * 19 17 2 42 42 H 1.09008 * 110.49766 * 278.45694 * 20 19 17 43 43 H 1.08994 * 110.34533 * 156.06360 * 20 19 17 44 44 H 0.96998 * 120.00161 * 180.02562 * 25 24 22 45 45 H 1.09000 * 109.88317 * 120.69895 * 30 21 20 46 46 H 1.08998 * 109.88094 * 241.86789 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3524 1.1684 0.0762 5 6 1.4039 2.4436 -0.0926 6 6 1.8892 3.4724 -0.9055 7 6 1.2063 4.6519 -0.9948 8 6 0.0281 4.8343 -0.2653 9 6 -0.7072 6.1115 -0.3578 10 6 -1.8616 6.4367 0.2885 11 7 -2.1945 7.6813 -0.0682 12 6 -1.3068 8.1492 -0.9049 13 7 -0.3590 7.2108 -1.1113 14 1 0.4194 7.2940 -1.6839 15 6 -0.4543 3.8078 0.5516 16 6 0.2252 2.6261 0.6367 17 6 2.1975 -1.2688 0.0006 18 1 3.2726 -1.0918 0.0305 19 6 1.7549 -2.1621 1.1894 20 6 0.4728 -2.8231 0.6187 21 7 0.7774 -3.0654 -0.8033 22 6 0.1850 -4.0115 -1.5964 23 1 0.4792 -4.1100 -2.6309 24 6 -0.7894 -4.8478 -1.0693 25 7 -1.1443 -4.7311 0.1927 26 14 -1.5981 -6.1380 -2.1514 27 1 -0.8241 -7.4031 -2.0760 28 1 -2.9862 -6.3783 -1.6821 29 1 -1.6266 -5.6583 -3.5565 30 6 1.8182 -2.1188 -1.2304 31 1 -0.3633 0.0149 1.0276 32 1 -0.3633 0.8824 -0.5266 33 1 -0.3634 -0.8973 -0.5009 34 1 2.8018 3.3329 -1.4661 35 1 1.5792 5.4452 -1.6256 36 1 -2.4102 5.8018 0.9684 37 1 -1.3255 9.1308 -1.3549 38 1 -1.3646 3.9491 1.1156 39 1 -0.1479 1.8328 1.2675 40 1 2.5140 -2.9094 1.4205 41 1 1.5235 -1.5583 2.0669 42 1 -0.3790 -2.1497 0.7147 43 1 0.2724 -3.7649 1.1295 44 1 -1.8250 -5.3157 0.5612 45 1 2.6916 -2.6644 -1.5875 46 1 1.4320 -1.4751 -2.0207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033553412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:31 Heat of formation + Delta-G solvation = 78.747923 kcal Electronic energy + Delta-G solvation = -28818.269537 eV Core-core repulsion = 24902.490620 eV Total energy + Delta-G solvation = -3915.778916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.97270 -41.65578 -39.84952 -38.76622 -36.08897 -34.31168 -33.68302 -33.02045 -32.15019 -31.03663 -29.75731 -29.20578 -27.70480 -26.38853 -24.98240 -23.96518 -22.58617 -22.16011 -21.94996 -21.44377 -20.30392 -19.49581 -18.96168 -18.48944 -17.69141 -16.78104 -16.63620 -16.54776 -16.05776 -15.97307 -15.78650 -15.57221 -14.99893 -14.91132 -14.77651 -14.43393 -14.28504 -14.23174 -13.89566 -13.84525 -13.58196 -13.33686 -13.24280 -12.98453 -12.94469 -12.78501 -12.42372 -12.12605 -12.02003 -11.92141 -11.80528 -11.41677 -11.16833 -11.08127 -10.92430 -10.68702 -10.53697 -10.09436 -9.71341 -8.86634 -8.84597 -7.75233 -5.19321 -0.47330 0.38506 1.11615 1.49048 1.49757 1.58241 1.68887 1.94153 2.13253 2.18264 2.50710 2.82946 3.34902 3.38829 3.60313 3.70981 3.72388 3.85177 3.87412 3.97964 4.01273 4.21033 4.26672 4.28266 4.33272 4.47670 4.53646 4.59179 4.63416 4.66531 4.73131 4.87406 4.88656 4.92317 5.01635 5.02993 5.09404 5.23105 5.30961 5.46621 5.46752 5.54501 5.66210 5.67176 5.78365 5.84316 6.33408 6.35651 6.48260 7.01932 7.05121 7.13380 7.78590 8.42293 9.25645 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002389 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.364949 B =11719.246344 C =12662.470703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.587 5.587 3 C 0.556 3.444 4 O -0.580 6.580 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.123 4.123 8 C 0.012 3.988 9 C -0.004 4.004 10 C -0.008 4.008 11 N -0.538 5.538 12 C 0.208 3.792 13 N -0.555 5.555 14 H 0.436 0.564 15 C -0.108 4.108 16 C -0.079 4.079 17 C 0.136 3.864 18 H 0.102 0.898 19 C -0.139 4.139 20 C 0.150 3.850 21 N -0.619 5.619 22 C -0.237 4.237 23 H 0.076 0.924 24 C -0.059 4.059 25 N -0.943 5.943 26 Si 0.976 3.024 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.274 1.274 30 C 0.129 3.871 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.183 0.817 37 H 0.250 0.750 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.019 0.981 43 H 0.072 0.928 44 H 0.248 0.752 45 H 0.033 0.967 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 25.158 -0.923 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.346 3.654 4 O -0.462 6.462 5 C -0.148 4.148 6 C -0.085 4.085 7 C -0.142 4.142 8 C 0.010 3.990 9 C -0.119 4.119 10 C -0.158 4.158 11 N -0.257 5.257 12 C -0.076 4.076 13 N -0.159 5.159 14 H 0.277 0.723 15 C -0.127 4.127 16 C -0.097 4.097 17 C 0.032 3.968 18 H 0.120 0.880 19 C -0.179 4.179 20 C 0.026 3.974 21 N -0.345 5.345 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.252 4.252 25 N -0.593 5.593 26 Si 0.805 3.195 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.199 1.199 30 C 0.003 3.997 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.266 0.734 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.412 25.426 -0.607 25.472 hybrid contribution 0.645 -1.561 -1.059 1.994 sum 2.057 23.865 -1.667 24.011 Atomic orbital electron populations 1.22351 0.78200 1.03917 1.02625 1.47739 1.07903 1.04914 1.71131 1.18781 0.86755 0.84339 0.75519 1.90732 1.15122 1.87867 1.52437 1.19896 0.97778 0.93992 1.03166 1.20872 0.99145 0.91962 0.96526 1.20948 0.94817 0.97788 1.00613 1.18202 0.93685 0.90687 0.96417 1.19604 0.99730 0.89729 1.02829 1.22784 0.95750 0.94035 1.03240 1.70192 1.28739 1.11118 1.15687 1.25854 0.85836 0.97410 0.98465 1.43333 1.23715 1.12068 1.36780 0.72266 1.21017 1.01162 0.91562 0.98950 1.21358 0.92326 0.98471 0.97544 1.21921 0.96714 0.82484 0.95679 0.87989 1.23237 0.99548 0.98270 0.96801 1.21985 0.92274 0.99228 0.83935 1.44739 1.43443 1.37649 1.08687 1.19356 1.15159 1.08807 0.93266 0.90631 1.25507 1.00226 1.01754 0.97762 1.70011 1.34511 1.41524 1.13214 0.85118 0.77219 0.79064 0.78130 1.21570 1.21907 1.19886 1.21687 0.91836 0.91080 0.95139 0.90821 0.89332 0.91332 0.85132 0.83278 0.79981 0.73450 0.82550 0.83562 0.90720 0.90041 0.96349 0.91048 0.94262 0.94924 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 7.04 127.77 0.90 2.99 16 2 N -0.59 -19.00 2.83 -819.65 -2.32 -21.32 16 3 C 0.56 17.75 7.31 86.71 0.63 18.38 16 4 O -0.58 -22.13 16.32 -4.00 -0.07 -22.19 16 5 C -0.15 -3.61 5.14 -20.05 -0.10 -3.71 16 6 C -0.07 -1.41 9.59 22.26 0.21 -1.19 16 7 C -0.12 -1.94 9.65 22.25 0.21 -1.72 16 8 C 0.01 0.19 5.88 -20.04 -0.12 0.07 16 9 C 0.00 -0.06 6.96 40.24 0.28 0.22 16 10 C -0.01 -0.15 11.28 83.94 0.95 0.80 16 11 N -0.54 -9.94 11.22 -199.41 -2.24 -12.18 16 12 C 0.21 2.20 13.02 180.24 2.35 4.55 16 13 N -0.55 -5.28 6.06 -187.62 -1.14 -6.42 16 14 H 0.44 1.30 8.20 -92.71 -0.76 0.54 16 15 C -0.11 -1.78 9.52 22.26 0.21 -1.57 16 16 C -0.08 -1.57 7.48 22.26 0.17 -1.41 16 17 C 0.14 4.94 3.57 46.18 0.16 5.11 16 18 H 0.10 3.72 6.99 -2.39 -0.02 3.71 16 19 C -0.14 -5.16 6.55 32.06 0.21 -4.95 16 20 C 0.15 6.92 5.03 86.93 0.44 7.36 16 21 N -0.62 -30.59 2.98 -691.53 -2.06 -32.65 16 22 C -0.24 -12.90 10.27 84.03 0.86 -12.03 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 25 N -0.94 -53.73 10.08 21.65 0.22 -53.51 16 26 Si 0.98 44.61 29.55 68.60 2.03 46.64 16 27 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 30 C 0.13 5.39 6.25 86.73 0.54 5.93 16 31 H 0.07 1.90 7.00 -2.39 -0.02 1.88 16 32 H 0.09 2.20 5.69 -2.39 -0.01 2.18 16 33 H 0.07 2.56 5.14 -2.39 -0.01 2.55 16 34 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.15 1.35 7.27 -2.91 -0.02 1.33 16 36 H 0.18 2.55 7.30 -2.91 -0.02 2.53 16 37 H 0.25 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.16 1.82 7.04 -2.91 -0.02 1.80 16 39 H 0.15 2.70 5.68 -2.91 -0.02 2.68 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.02 0.86 5.54 -2.38 -0.01 0.85 16 43 H 0.07 3.84 5.86 -2.39 -0.01 3.82 16 44 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 Total: -1.00 -73.51 366.80 3.09 -70.42 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.28 Total: 15.18 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 8.38 Total: 16.03 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -7.53 Total: -126.07 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.51 3.09 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033553412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.169 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds