Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00122 * 2 1 4 4 O 1.21593 * 119.99961 * 184.65083 * 3 2 1 5 5 C 1.47579 * 120.00082 * 4.66142 * 3 2 1 6 6 C 1.39820 * 120.00381 * 319.74438 * 5 3 2 7 7 C 1.36578 * 119.99705 * 179.97438 * 6 5 3 8 8 C 1.39786 * 120.00213 * 359.97438 * 7 6 5 9 9 C 1.47659 * 119.99281 * 179.97438 * 8 7 6 10 10 C 1.36241 * 126.77727 * 359.97438 * 9 8 7 11 11 N 1.33689 * 107.85949 * 180.02562 * 10 9 8 12 12 C 1.30658 * 109.57425 * 359.97438 * 11 10 9 13 13 N 1.34955 * 109.02935 * 0.02562 * 12 11 10 14 14 H 0.97004 * 126.45178 * 179.73711 * 13 12 11 15 15 C 1.39775 * 120.00739 * 0.27594 * 8 7 6 16 16 C 1.36578 * 120.00643 * 359.44421 * 15 8 7 17 17 C 1.46507 * 119.99806 * 180.02562 * 2 1 3 18 18 H 1.08992 * 110.88357 * 180.70255 * 17 2 1 19 19 C 1.55159 * 111.00313 * 56.81747 * 17 2 1 20 20 C 1.54325 * 102.94243 * 277.42922 * 19 17 2 21 21 N 1.47020 * 107.27447 * 337.80664 * 20 19 17 22 22 C 1.36937 * 125.65101 * 178.97714 * 21 20 19 23 23 H 1.07996 * 120.00008 * 174.91454 * 22 21 20 24 24 C 1.38810 * 119.99639 * 354.91067 * 22 21 20 25 25 N 1.31621 * 120.00205 * 6.77745 * 24 22 21 26 26 Si 1.86800 * 119.99756 * 186.77939 * 24 22 21 27 27 H 1.48495 * 109.47439 * 94.98766 * 26 24 22 28 28 H 1.48504 * 109.47037 * 214.99006 * 26 24 22 29 29 H 1.48504 * 109.47298 * 334.98514 * 26 24 22 30 30 C 1.47531 * 108.71368 * 358.94474 * 21 20 19 31 31 H 1.09007 * 109.46957 * 88.42138 * 1 2 3 32 32 H 1.08995 * 109.47463 * 208.42638 * 1 2 3 33 33 H 1.09001 * 109.46963 * 328.43246 * 1 2 3 34 34 H 1.08004 * 120.00054 * 0.02562 * 6 5 3 35 35 H 1.07992 * 119.99880 * 180.02562 * 7 6 5 36 36 H 1.07994 * 126.07171 * 0.03972 * 10 9 8 37 37 H 1.07998 * 125.48455 * 179.97438 * 12 11 10 38 38 H 1.08007 * 119.99691 * 179.72491 * 15 8 7 39 39 H 1.08004 * 120.00532 * 180.29476 * 16 15 8 40 40 H 1.08994 * 110.71696 * 35.79487 * 19 17 2 41 41 H 1.09003 * 110.71666 * 159.06709 * 19 17 2 42 42 H 1.08997 * 109.87971 * 97.22778 * 20 19 17 43 43 H 1.09005 * 109.87869 * 218.24013 * 20 19 17 44 44 H 0.96996 * 119.99637 * 180.02562 * 25 24 22 45 45 H 1.08999 * 110.37134 * 265.30470 * 30 21 20 46 46 H 1.09001 * 110.40811 * 142.94919 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1689 -0.0854 5 6 1.4047 2.4432 0.1039 6 6 0.2028 2.6167 -0.5892 7 6 -0.4768 3.7974 -0.4926 8 6 0.0289 4.8322 0.2996 9 6 -0.7057 6.1088 0.4035 10 6 -1.8804 6.4261 -0.2093 11 7 -2.2040 7.6738 0.1454 12 6 -1.2909 8.1512 0.9490 13 7 -0.3385 7.2141 1.1389 14 1 0.4569 7.3036 1.6869 15 6 1.2330 4.6607 0.9884 16 6 1.9100 3.4781 0.8966 17 6 2.1975 -1.2688 -0.0006 18 1 3.2736 -1.0962 0.0120 19 6 1.7890 -2.1463 -1.2133 20 6 0.4931 -2.8280 -0.7257 21 7 0.5120 -2.8009 0.7441 22 6 -0.4698 -3.2897 1.5641 23 1 -0.3257 -3.2967 2.6343 24 6 -1.6504 -3.7760 1.0195 25 7 -1.7744 -3.8919 -0.2857 26 14 -3.0631 -4.2661 2.1391 27 1 -4.0078 -3.1281 2.2712 28 1 -3.7730 -5.4340 1.5581 29 1 -2.5315 -4.6262 3.4782 30 6 1.7642 -2.1606 1.1897 31 1 -0.3633 0.0283 -1.0273 32 1 -0.3634 -0.9037 0.4892 33 1 -0.3633 0.8756 0.5380 34 1 -0.1885 1.8168 -1.2003 35 1 -1.4052 3.9314 -1.0276 36 1 -2.4494 5.7837 -0.8649 37 1 -1.2970 9.1372 1.3895 38 1 1.6259 5.4619 1.5969 39 1 2.8380 3.3439 1.4326 40 1 1.5932 -1.5271 -2.0886 41 1 2.5577 -2.8884 -1.4286 42 1 -0.3747 -2.2819 -1.0955 43 1 0.4608 -3.8586 -1.0793 44 1 -2.5996 -4.2314 -0.6662 45 1 2.5239 -2.9148 1.3949 46 1 1.5850 -1.5507 2.0752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033553413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 97.112039 kcal Electronic energy + Delta-G solvation = -29108.152100 eV Core-core repulsion = 25193.169512 eV Total energy + Delta-G solvation = -3914.982588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33820 -40.40175 -38.70368 -37.31693 -34.43275 -33.20273 -32.54539 -31.99577 -31.18684 -29.40420 -28.62506 -27.82513 -26.14432 -24.73192 -23.83492 -23.15556 -21.68328 -21.22587 -20.57032 -20.12674 -19.07416 -18.71456 -17.30790 -16.91648 -16.26445 -15.77959 -15.52042 -15.34668 -14.88152 -14.70962 -14.58902 -14.22366 -13.98632 -13.84439 -13.78754 -13.54624 -13.18315 -12.99311 -12.69412 -12.21367 -12.04784 -11.99999 -11.72997 -11.60633 -11.14070 -10.99010 -10.93992 -10.79233 -10.47440 -10.39880 -10.30122 -10.17419 -9.99022 -9.81752 -9.73977 -9.46494 -9.22021 -8.71983 -8.26559 -8.06911 -6.88355 -5.81251 -3.14869 0.38803 1.22158 1.88489 2.66443 2.74352 2.98936 3.28909 3.34763 3.41301 3.42593 3.73724 4.21372 4.42566 4.44215 4.50262 4.65917 4.66391 4.97284 5.08631 5.13501 5.23809 5.32803 5.38214 5.41941 5.53828 5.62300 5.67296 5.72379 5.78586 5.84479 6.00912 6.06034 6.17420 6.21529 6.25152 6.31220 6.33756 6.47436 6.49755 6.58775 6.61691 6.76211 6.94889 7.04493 7.48430 7.53172 7.66923 7.73923 7.76479 8.15078 8.37820 9.12606 9.71874 10.37588 11.29851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002842 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.651528 B = 9850.465757 C =11345.162331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.578 5.578 3 C 0.552 3.448 4 O -0.551 6.551 5 C -0.119 4.119 6 C -0.078 4.078 7 C -0.108 4.108 8 C 0.004 3.996 9 C 0.011 3.989 10 C 0.004 3.996 11 N -0.494 5.494 12 C 0.192 3.808 13 N -0.565 5.565 14 H 0.421 0.579 15 C -0.130 4.130 16 C -0.059 4.059 17 C 0.122 3.878 18 H 0.100 0.900 19 C -0.155 4.155 20 C 0.172 3.828 21 N -0.602 5.602 22 C -0.233 4.233 23 H 0.078 0.922 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.909 3.091 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.125 3.875 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.176 0.824 37 H 0.211 0.789 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 20.015 0.804 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.308 5.308 3 C 0.340 3.660 4 O -0.430 6.430 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.127 4.127 8 C 0.002 3.998 9 C -0.103 4.103 10 C -0.145 4.145 11 N -0.212 5.212 12 C -0.091 4.091 13 N -0.168 5.168 14 H 0.259 0.741 15 C -0.148 4.148 16 C -0.078 4.078 17 C 0.018 3.982 18 H 0.118 0.882 19 C -0.194 4.194 20 C 0.048 3.952 21 N -0.330 5.330 22 C -0.361 4.361 23 H 0.096 0.904 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.739 3.261 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.002 4.002 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.193 0.807 37 H 0.227 0.773 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.858 20.305 0.463 20.673 hybrid contribution 0.233 -0.656 1.107 1.308 sum 4.091 19.649 1.570 20.131 Atomic orbital electron populations 1.22616 0.78464 1.06375 1.01619 1.47626 1.07782 1.04957 1.70448 1.18314 0.87005 0.83705 0.76978 1.90747 1.13626 1.87394 1.51271 1.20057 0.96296 0.95052 1.00800 1.21412 0.92868 0.97638 0.97740 1.20771 1.00661 0.92180 0.99095 1.18044 0.93752 0.90499 0.97492 1.19711 0.99131 0.89147 1.02345 1.22494 0.95028 0.93804 1.03220 1.70187 1.26809 1.10230 1.14022 1.25051 0.86789 0.96501 1.00728 1.43330 1.22287 1.12700 1.38447 0.74085 1.20686 0.95124 0.97904 1.01101 1.20779 0.99051 0.91483 0.96468 1.22289 0.96199 0.82310 0.97361 0.88180 1.23243 1.00837 0.98497 0.96841 1.21263 0.91984 0.98587 0.83387 1.44639 1.17532 1.68814 1.01974 1.19037 0.92969 1.34754 0.89328 0.90430 1.24796 0.98021 1.01261 0.95948 1.69977 1.26269 1.51175 1.08994 0.86151 0.82580 0.77770 0.79593 1.21512 1.21774 1.20682 1.21935 0.89999 0.93547 0.94742 0.93023 0.85459 0.91952 0.83893 0.84756 0.80733 0.77304 0.86323 0.84952 0.91845 0.91289 0.92882 0.94079 0.93656 0.95044 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 7.15 59.85 0.43 1.29 16 2 N -0.58 -9.88 2.91 -172.68 -0.50 -10.38 16 3 C 0.55 9.27 7.33 -12.45 -0.09 9.18 16 4 O -0.55 -10.67 16.31 5.28 0.09 -10.59 16 5 C -0.12 -1.64 5.21 -104.91 -0.55 -2.19 16 6 C -0.08 -0.94 7.46 -39.59 -0.30 -1.23 16 7 C -0.11 -1.12 9.52 -39.60 -0.38 -1.50 16 8 C 0.00 0.04 5.88 -104.90 -0.62 -0.58 16 9 C 0.01 0.11 6.96 -82.08 -0.57 -0.46 16 10 C 0.00 0.05 11.28 -17.46 -0.20 -0.15 16 11 N -0.49 -5.37 11.22 -14.38 -0.16 -5.53 16 12 C 0.19 1.43 13.02 -90.32 -1.18 0.25 16 13 N -0.56 -3.93 6.06 -10.66 -0.06 -3.99 16 14 H 0.42 1.63 8.20 -40.82 -0.33 1.30 16 15 C -0.13 -1.27 9.65 -39.61 -0.38 -1.65 16 16 C -0.06 -0.71 9.58 -39.59 -0.38 -1.09 16 17 C 0.12 2.21 3.66 -65.77 -0.24 1.97 16 18 H 0.10 1.79 7.02 -51.93 -0.36 1.42 16 19 C -0.15 -2.82 6.43 -24.89 -0.16 -2.98 16 20 C 0.17 3.86 4.31 -3.06 -0.01 3.85 16 21 N -0.60 -14.13 1.90 -169.99 -0.32 -14.45 16 22 C -0.23 -6.04 9.86 -15.06 -0.15 -6.18 16 23 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 24 C 0.00 -0.09 5.48 -17.43 -0.10 -0.19 16 25 N -0.92 -25.14 10.36 55.49 0.57 -24.56 16 26 Si 0.91 21.04 29.56 -169.99 -5.02 16.02 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 C 0.12 2.49 6.51 -2.47 -0.02 2.47 16 31 H 0.05 0.80 6.98 -51.93 -0.36 0.44 16 32 H 0.13 2.63 4.56 -51.93 -0.24 2.40 16 33 H 0.06 0.92 5.64 -51.93 -0.29 0.63 16 34 H 0.14 1.65 5.48 -52.48 -0.29 1.36 16 35 H 0.13 1.10 7.04 -52.49 -0.37 0.73 16 36 H 0.18 1.50 7.30 -52.49 -0.38 1.12 16 37 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.81 7.27 -52.48 -0.38 0.43 16 39 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.28 6.18 -51.93 -0.32 0.95 16 43 H 0.04 1.04 7.61 -51.93 -0.40 0.65 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -32.43 367.03 -10.57 -43.00 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.81 Total: 4.15 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -4.88 Total: 0.80 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.48 Total: -58.92 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.43 -10.57 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033553413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.112 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds