Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00122 * 2 1 4 4 O 1.21593 * 119.99961 * 184.65083 * 3 2 1 5 5 C 1.47579 * 120.00082 * 4.66142 * 3 2 1 6 6 C 1.39820 * 120.00381 * 319.74438 * 5 3 2 7 7 C 1.36578 * 119.99705 * 179.97438 * 6 5 3 8 8 C 1.39786 * 120.00213 * 359.97438 * 7 6 5 9 9 C 1.47659 * 119.99281 * 179.97438 * 8 7 6 10 10 C 1.36241 * 126.77727 * 359.97438 * 9 8 7 11 11 N 1.33689 * 107.85949 * 180.02562 * 10 9 8 12 12 C 1.30658 * 109.57425 * 359.97438 * 11 10 9 13 13 N 1.34955 * 109.02935 * 0.02562 * 12 11 10 14 14 H 0.97004 * 126.45178 * 179.73711 * 13 12 11 15 15 C 1.39775 * 120.00739 * 0.27594 * 8 7 6 16 16 C 1.36578 * 120.00643 * 359.44421 * 15 8 7 17 17 C 1.46507 * 119.99806 * 180.02562 * 2 1 3 18 18 H 1.08992 * 110.88357 * 180.70255 * 17 2 1 19 19 C 1.55159 * 111.00313 * 56.81747 * 17 2 1 20 20 C 1.54325 * 102.94243 * 277.42922 * 19 17 2 21 21 N 1.47020 * 107.27447 * 337.80664 * 20 19 17 22 22 C 1.36937 * 125.65101 * 178.97714 * 21 20 19 23 23 H 1.07996 * 120.00008 * 174.91454 * 22 21 20 24 24 C 1.38810 * 119.99639 * 354.91067 * 22 21 20 25 25 N 1.31621 * 120.00205 * 6.77745 * 24 22 21 26 26 Si 1.86800 * 119.99756 * 186.77939 * 24 22 21 27 27 H 1.48495 * 109.47439 * 94.98766 * 26 24 22 28 28 H 1.48504 * 109.47037 * 214.99006 * 26 24 22 29 29 H 1.48504 * 109.47298 * 334.98514 * 26 24 22 30 30 C 1.47531 * 108.71368 * 358.94474 * 21 20 19 31 31 H 1.09007 * 109.46957 * 88.42138 * 1 2 3 32 32 H 1.08995 * 109.47463 * 208.42638 * 1 2 3 33 33 H 1.09001 * 109.46963 * 328.43246 * 1 2 3 34 34 H 1.08004 * 120.00054 * 0.02562 * 6 5 3 35 35 H 1.07992 * 119.99880 * 180.02562 * 7 6 5 36 36 H 1.07994 * 126.07171 * 0.03972 * 10 9 8 37 37 H 1.07998 * 125.48455 * 179.97438 * 12 11 10 38 38 H 1.08007 * 119.99691 * 179.72491 * 15 8 7 39 39 H 1.08004 * 120.00532 * 180.29476 * 16 15 8 40 40 H 1.08994 * 110.71696 * 35.79487 * 19 17 2 41 41 H 1.09003 * 110.71666 * 159.06709 * 19 17 2 42 42 H 1.08997 * 109.87971 * 97.22778 * 20 19 17 43 43 H 1.09005 * 109.87869 * 218.24013 * 20 19 17 44 44 H 0.96996 * 119.99637 * 180.02562 * 25 24 22 45 45 H 1.08999 * 110.37134 * 265.30470 * 30 21 20 46 46 H 1.09001 * 110.40811 * 142.94919 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1689 -0.0854 5 6 1.4047 2.4432 0.1039 6 6 0.2028 2.6167 -0.5892 7 6 -0.4768 3.7974 -0.4926 8 6 0.0289 4.8322 0.2996 9 6 -0.7057 6.1088 0.4035 10 6 -1.8804 6.4261 -0.2093 11 7 -2.2040 7.6738 0.1454 12 6 -1.2909 8.1512 0.9490 13 7 -0.3385 7.2141 1.1389 14 1 0.4569 7.3036 1.6869 15 6 1.2330 4.6607 0.9884 16 6 1.9100 3.4781 0.8966 17 6 2.1975 -1.2688 -0.0006 18 1 3.2736 -1.0962 0.0120 19 6 1.7890 -2.1463 -1.2133 20 6 0.4931 -2.8280 -0.7257 21 7 0.5120 -2.8009 0.7441 22 6 -0.4698 -3.2897 1.5641 23 1 -0.3257 -3.2967 2.6343 24 6 -1.6504 -3.7760 1.0195 25 7 -1.7744 -3.8919 -0.2857 26 14 -3.0631 -4.2661 2.1391 27 1 -4.0078 -3.1281 2.2712 28 1 -3.7730 -5.4340 1.5581 29 1 -2.5315 -4.6262 3.4782 30 6 1.7642 -2.1606 1.1897 31 1 -0.3633 0.0283 -1.0273 32 1 -0.3634 -0.9037 0.4892 33 1 -0.3633 0.8756 0.5380 34 1 -0.1885 1.8168 -1.2003 35 1 -1.4052 3.9314 -1.0276 36 1 -2.4494 5.7837 -0.8649 37 1 -1.2970 9.1372 1.3895 38 1 1.6259 5.4619 1.5969 39 1 2.8380 3.3439 1.4326 40 1 1.5932 -1.5271 -2.0886 41 1 2.5577 -2.8884 -1.4286 42 1 -0.3747 -2.2819 -1.0955 43 1 0.4608 -3.8586 -1.0793 44 1 -2.5996 -4.2314 -0.6662 45 1 2.5239 -2.9148 1.3949 46 1 1.5850 -1.5507 2.0752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033553413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 79.605055 kcal Electronic energy + Delta-G solvation = -29108.911260 eV Core-core repulsion = 25193.169512 eV Total energy + Delta-G solvation = -3915.741748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.97654 -41.62717 -39.85293 -38.76899 -35.94778 -34.33818 -33.69409 -33.01787 -32.14415 -31.09432 -29.72131 -29.16540 -27.58608 -26.38190 -24.99659 -23.95372 -22.61705 -22.09294 -21.93820 -21.45601 -20.31418 -19.48996 -18.91937 -18.42722 -17.60028 -16.70239 -16.62202 -16.54953 -16.08727 -15.98006 -15.76581 -15.51648 -15.08998 -14.89271 -14.78616 -14.49246 -14.28895 -14.24027 -13.87291 -13.77239 -13.49491 -13.41809 -13.19311 -12.90482 -12.81403 -12.75549 -12.35024 -12.11086 -12.00309 -11.86751 -11.83676 -11.54505 -11.16668 -11.08154 -10.88888 -10.67157 -10.54103 -10.09151 -9.71860 -8.86224 -8.77552 -7.82550 -5.16729 -0.47304 0.38634 1.11635 1.49825 1.50895 1.58845 1.71979 1.99210 2.12737 2.18454 2.51587 2.83668 3.36778 3.42205 3.60651 3.66879 3.71798 3.85466 3.89376 3.98013 4.02004 4.22997 4.30294 4.30753 4.37315 4.48190 4.53396 4.62195 4.65856 4.67463 4.75289 4.88795 4.89935 4.95944 5.01422 5.04248 5.20747 5.27845 5.32352 5.46427 5.50345 5.58899 5.65588 5.68858 5.78613 5.81399 6.20975 6.41670 6.48433 7.04637 7.05549 7.13303 7.77903 8.42989 9.27220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002842 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.651528 B = 9850.465757 C =11345.162331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.582 5.582 3 C 0.554 3.446 4 O -0.580 6.580 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.111 4.111 8 C 0.012 3.988 9 C -0.003 4.003 10 C -0.009 4.009 11 N -0.538 5.538 12 C 0.208 3.792 13 N -0.554 5.554 14 H 0.436 0.564 15 C -0.123 4.123 16 C -0.065 4.065 17 C 0.132 3.868 18 H 0.108 0.892 19 C -0.141 4.141 20 C 0.185 3.815 21 N -0.614 5.614 22 C -0.239 4.239 23 H 0.078 0.922 24 C -0.052 4.052 25 N -0.942 5.942 26 Si 0.969 3.031 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.274 1.274 30 C 0.125 3.875 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.251 0.749 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.032 0.968 43 H 0.004 0.996 44 H 0.247 0.753 45 H 0.039 0.961 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 22.718 1.779 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.311 5.311 3 C 0.344 3.656 4 O -0.462 6.462 5 C -0.149 4.149 6 C -0.099 4.099 7 C -0.129 4.129 8 C 0.010 3.990 9 C -0.118 4.118 10 C -0.159 4.159 11 N -0.257 5.257 12 C -0.075 4.075 13 N -0.158 5.158 14 H 0.278 0.722 15 C -0.142 4.142 16 C -0.083 4.083 17 C 0.027 3.973 18 H 0.126 0.874 19 C -0.180 4.180 20 C 0.061 3.939 21 N -0.341 5.341 22 C -0.368 4.368 23 H 0.095 0.905 24 C -0.246 4.246 25 N -0.590 5.590 26 Si 0.798 3.202 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.199 1.199 30 C -0.001 4.001 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.198 0.802 37 H 0.266 0.734 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.051 23.021 1.466 23.420 hybrid contribution 0.177 -1.344 0.847 1.598 sum 4.228 21.676 2.312 22.206 Atomic orbital electron populations 1.22434 0.78228 1.05194 1.01926 1.47653 1.07837 1.04920 1.70695 1.18752 0.86745 0.84355 0.75720 1.90718 1.14969 1.87885 1.52662 1.19930 0.97405 0.94219 1.03324 1.21394 0.92448 0.98389 0.97687 1.20996 1.01180 0.91622 0.99118 1.18190 0.93616 0.90623 0.96551 1.19583 0.99188 0.89606 1.03430 1.22761 0.95529 0.94108 1.03500 1.70191 1.28725 1.10789 1.16022 1.25864 0.85437 0.97442 0.98759 1.43316 1.22773 1.11766 1.37973 0.72224 1.20959 0.94566 0.97835 1.00798 1.20881 0.99325 0.91808 0.96326 1.22135 0.96603 0.82538 0.96010 0.87439 1.23114 0.98938 0.98685 0.97228 1.20986 0.93461 0.96469 0.83021 1.44777 1.18217 1.68828 1.02309 1.19295 0.93715 1.34043 0.89726 0.90463 1.25464 1.00054 1.01979 0.97110 1.70157 1.26304 1.52246 1.10307 0.85213 0.79812 0.76993 0.78210 1.21180 1.22552 1.19898 1.22013 0.88762 0.93801 0.95484 0.92235 0.89168 0.90139 0.83990 0.82847 0.80184 0.73354 0.83103 0.84891 0.90604 0.89771 0.94938 0.97759 0.94331 0.94338 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.16 7.15 127.77 0.91 3.07 16 2 N -0.58 -19.73 2.91 -818.50 -2.38 -22.11 16 3 C 0.55 18.39 7.33 86.71 0.64 19.03 16 4 O -0.58 -22.33 16.31 -4.01 -0.07 -22.39 16 5 C -0.15 -3.90 5.21 -20.05 -0.10 -4.00 16 6 C -0.08 -1.85 7.46 22.26 0.17 -1.68 16 7 C -0.11 -2.09 9.52 22.26 0.21 -1.88 16 8 C 0.01 0.21 5.88 -20.04 -0.12 0.09 16 9 C 0.00 -0.05 6.96 40.24 0.28 0.23 16 10 C -0.01 -0.18 11.28 83.94 0.95 0.77 16 11 N -0.54 -10.56 11.22 -199.42 -2.24 -12.79 16 12 C 0.21 2.40 13.02 180.24 2.35 4.74 16 13 N -0.55 -5.81 6.06 -187.62 -1.14 -6.95 16 14 H 0.44 1.64 8.20 -92.71 -0.76 0.88 16 15 C -0.12 -2.09 9.65 22.25 0.21 -1.87 16 16 C -0.06 -1.45 9.58 22.26 0.21 -1.24 16 17 C 0.13 4.70 3.66 46.38 0.17 4.87 16 18 H 0.11 3.75 7.02 -2.39 -0.02 3.73 16 19 C -0.14 -5.08 6.43 31.78 0.20 -4.88 16 20 C 0.19 8.53 4.31 86.73 0.37 8.90 16 21 N -0.61 -29.34 1.90 -691.71 -1.31 -30.66 16 22 C -0.24 -12.58 9.86 84.03 0.83 -11.75 16 23 H 0.08 3.98 7.84 -2.91 -0.02 3.95 16 24 C -0.05 -2.79 5.48 84.86 0.46 -2.32 16 25 N -0.94 -53.07 10.36 21.65 0.22 -52.85 16 26 Si 0.97 43.77 29.56 68.60 2.03 45.80 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 30 C 0.13 5.01 6.51 86.84 0.57 5.58 16 31 H 0.06 1.86 6.98 -2.38 -0.02 1.85 16 32 H 0.09 3.80 4.56 -2.39 -0.01 3.79 16 33 H 0.08 2.36 5.64 -2.39 -0.01 2.35 16 34 H 0.14 3.19 5.48 -2.91 -0.02 3.17 16 35 H 0.15 2.23 7.04 -2.91 -0.02 2.21 16 36 H 0.18 2.88 7.30 -2.91 -0.02 2.86 16 37 H 0.25 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.15 1.49 7.27 -2.91 -0.02 1.47 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.03 1.62 6.18 -2.39 -0.01 1.60 16 43 H 0.00 0.22 7.61 -2.38 -0.02 0.20 16 44 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.42 367.03 3.71 -67.71 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.27 Total: 16.59 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 8.31 Total: 17.66 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.85 Total: -125.36 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.39 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.42 3.71 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033553413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.320 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds