Wall clock time and date at job start Sat Apr 11 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34768 * 120.00448 * 2 1 4 4 O 1.21511 * 120.00190 * 182.02546 * 3 2 1 5 5 C 1.48188 * 119.99955 * 2.01864 * 3 2 1 6 6 C 1.39117 * 119.69306 * 172.76641 * 5 3 2 7 7 C 1.39289 * 118.97326 * 179.70207 * 6 5 3 8 8 N 1.39907 * 120.82257 * 180.25550 * 7 6 5 9 9 C 1.36625 * 125.67409 * 359.69524 * 8 7 6 10 10 C 1.34824 * 108.19226 * 179.82771 * 9 8 7 11 11 C 1.40974 * 107.48017 * 0.43081 * 10 9 8 12 12 C 1.34818 * 107.48349 * 359.72819 * 11 10 9 13 13 C 1.39288 * 118.35357 * 0.28172 * 7 6 5 14 14 C 1.38329 * 119.27906 * 359.97438 * 13 7 6 15 15 N 1.31597 * 120.97438 * 0.02562 * 14 13 7 16 16 C 1.46505 * 119.99637 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.88415 * 176.12427 * 16 2 1 18 18 C 1.55157 * 111.00408 * 300.00004 * 16 2 1 19 19 C 1.54325 * 102.94248 * 153.57870 * 18 16 2 20 20 N 1.47022 * 107.27023 * 337.80711 * 19 18 16 21 21 C 1.36937 * 125.64926 * 178.92475 * 20 19 18 22 22 H 1.07996 * 119.99871 * 175.00606 * 21 20 19 23 23 C 1.38808 * 119.99964 * 354.99872 * 21 20 19 24 24 N 1.31623 * 119.99798 * 5.27541 * 23 21 20 25 25 Si 1.86794 * 120.00221 * 185.27195 * 23 21 20 26 26 H 1.48500 * 109.47512 * 94.99775 * 25 23 21 27 27 H 1.48500 * 109.47490 * 214.99990 * 25 23 21 28 28 H 1.48505 * 109.47054 * 335.00222 * 25 23 21 29 29 C 1.47426 * 108.70362 * 358.93819 * 20 19 18 30 30 H 1.08998 * 109.47051 * 83.76097 * 1 2 3 31 31 H 1.08996 * 109.47455 * 203.76407 * 1 2 3 32 32 H 1.08999 * 109.46998 * 323.76538 * 1 2 3 33 33 H 1.08000 * 120.51362 * 359.97438 * 6 5 3 34 34 H 1.07998 * 125.90890 * 0.02562 * 9 8 7 35 35 H 1.08004 * 126.25633 * 180.19593 * 10 9 8 36 36 H 1.08001 * 126.26067 * 179.77243 * 11 10 9 37 37 H 1.07995 * 125.90199 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.35757 * 180.02562 * 13 7 6 39 39 H 1.07995 * 119.50713 * 180.02562 * 14 13 7 40 40 H 1.09002 * 110.72294 * 271.93896 * 18 16 2 41 41 H 1.09007 * 110.72318 * 35.03692 * 18 16 2 42 42 H 1.08994 * 109.88458 * 97.22569 * 19 18 16 43 43 H 1.08997 * 109.88270 * 218.23858 * 19 18 16 44 44 H 0.97004 * 119.99471 * 179.97438 * 24 23 21 45 45 H 1.09000 * 110.36876 * 265.29290 * 29 20 19 46 46 H 1.08999 * 110.36297 * 142.96355 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3535 1.1673 -0.0372 5 6 1.3988 2.4501 0.0452 6 6 2.0972 3.6436 0.1972 7 6 1.3870 4.8413 0.2315 8 7 2.0506 6.0643 0.3775 9 6 3.4011 6.2279 0.5037 10 6 3.6564 7.5468 0.6183 11 6 2.4204 8.2231 0.5711 12 6 1.4554 7.2933 0.4234 13 6 -0.0003 4.7912 0.1174 14 6 -0.6235 3.5645 -0.0256 15 7 0.0747 2.4494 -0.0546 16 6 2.1974 -1.2688 0.0006 17 1 3.2717 -1.0974 -0.0683 18 6 1.8483 -2.1120 1.2554 19 6 2.1062 -3.5582 0.7827 20 7 2.0264 -3.5585 -0.6853 21 6 2.2170 -4.6464 -1.4948 22 1 2.0574 -4.5618 -2.5596 23 6 2.6156 -5.8579 -0.9468 24 7 2.7098 -5.9901 0.3593 25 14 3.0181 -7.3005 -2.0630 26 1 4.4810 -7.3381 -2.3155 27 1 2.5960 -8.5653 -1.4091 28 1 2.2972 -7.1452 -3.3521 29 6 1.7073 -2.1934 -1.1416 30 1 -0.3633 0.1117 -1.0216 31 1 -0.3634 -0.9405 0.4141 32 1 -0.3633 0.8289 0.6074 33 1 3.1738 3.6418 0.2828 34 1 4.1372 5.4377 0.5076 35 1 4.6296 8.0016 0.7301 36 1 2.2734 9.2908 0.6400 37 1 0.3952 7.4866 0.3530 38 1 -0.5830 5.7002 0.1395 39 1 -1.6989 3.5214 -0.1148 40 1 2.5042 -1.8554 2.0872 41 1 0.8033 -1.9749 1.5336 42 1 3.0978 -3.8807 1.1001 43 1 1.3497 -4.2243 1.1975 44 1 2.9880 -6.8368 0.7423 45 1 0.6324 -2.0827 -1.2846 46 1 2.2391 -1.9686 -2.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033560716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:40 Heat of formation + Delta-G solvation = 117.174543 kcal Electronic energy + Delta-G solvation = -28612.568895 eV Core-core repulsion = 24698.456282 eV Total energy + Delta-G solvation = -3914.112613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18101 -40.73803 -39.19787 -37.32501 -35.11288 -34.27042 -32.33172 -31.77947 -30.17575 -29.42428 -29.15051 -27.54757 -26.70636 -25.11753 -24.23187 -24.00855 -21.79027 -20.67731 -20.30318 -20.11658 -19.38610 -18.50835 -17.38432 -16.96180 -16.39180 -16.22493 -15.86920 -15.76385 -15.17668 -14.93359 -14.63679 -14.44427 -14.09609 -13.94133 -13.85071 -13.70735 -12.89214 -12.83481 -12.74657 -12.55600 -12.42012 -12.40009 -12.23222 -11.98703 -11.70109 -10.98997 -10.94479 -10.82926 -10.74950 -10.41125 -10.17760 -10.05785 -9.80422 -9.73089 -9.72039 -9.44316 -8.80269 -8.70787 -8.59812 -8.33090 -6.83891 -5.72100 -3.05579 0.14398 0.42698 1.95045 2.22129 2.57585 2.66421 2.97417 3.41384 3.46538 3.48321 3.51386 3.80176 4.05233 4.15941 4.47743 4.50749 4.52096 4.69909 4.81625 4.93325 5.08750 5.22669 5.24227 5.35620 5.36793 5.43440 5.49348 5.64042 5.70313 5.79952 5.80544 5.80889 5.83967 5.96540 6.20541 6.27914 6.31643 6.44649 6.51021 6.60007 6.68658 6.69999 6.88515 6.92760 7.29374 7.52483 7.54204 7.62804 7.82188 8.15653 8.25346 9.21041 9.81036 10.46455 11.39650 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.002078 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.204752 B =13468.506531 C =13902.202791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.574 5.574 3 C 0.562 3.438 4 O -0.536 6.536 5 C 0.121 3.879 6 C -0.138 4.138 7 C 0.182 3.818 8 N -0.401 5.401 9 C -0.010 4.010 10 C -0.186 4.186 11 C -0.184 4.184 12 C -0.016 4.016 13 C -0.181 4.181 14 C 0.124 3.876 15 N -0.458 5.458 16 C 0.119 3.881 17 H 0.107 0.893 18 C -0.152 4.152 19 C 0.179 3.821 20 N -0.603 5.603 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.133 3.867 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.173 0.827 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 27.745 2.373 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.303 5.303 3 C 0.348 3.652 4 O -0.413 6.413 5 C -0.017 4.017 6 C -0.161 4.161 7 C 0.081 3.919 8 N -0.074 5.074 9 C -0.135 4.135 10 C -0.210 4.210 11 C -0.208 4.208 12 C -0.141 4.141 13 C -0.203 4.203 14 C -0.035 4.035 15 N -0.171 5.171 16 C 0.016 3.984 17 H 0.125 0.875 18 C -0.191 4.191 19 C 0.054 3.946 20 N -0.330 5.330 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.005 3.995 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.190 0.810 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.001 26.418 2.251 27.423 hybrid contribution 0.522 0.107 -0.435 0.688 sum -6.480 26.525 1.816 27.365 Atomic orbital electron populations 1.22367 0.78269 1.03390 1.02854 1.47724 1.08067 1.05262 1.69278 1.17776 0.86537 0.82830 0.78107 1.90792 1.12773 1.86629 1.51069 1.21159 0.89744 0.93689 0.97113 1.21737 1.02578 0.89999 1.01738 1.18029 0.92033 0.84702 0.97122 1.41592 1.06819 1.03954 1.55024 1.22108 0.83390 0.98932 1.09107 1.21084 0.98863 0.92511 1.08525 1.21069 0.92315 0.99103 1.08331 1.21947 0.99305 0.82519 1.10367 1.22021 0.92376 1.01256 1.04673 1.22894 1.00976 0.86399 0.93194 1.68276 1.06679 1.29710 1.12427 1.22586 0.97439 0.80821 0.97585 0.87467 1.23255 1.00676 0.98616 0.96567 1.21155 1.01122 0.88842 0.83495 1.44381 1.83327 1.03020 1.02222 1.19056 1.39093 0.87426 0.90088 0.90346 1.24839 1.01536 0.97957 0.96042 1.69969 1.53208 1.24764 1.08806 0.86089 0.78242 0.81927 0.79449 1.21577 1.21750 1.20623 1.21745 0.97261 0.85796 0.94661 0.92469 0.91484 0.87977 0.82755 0.81277 0.83785 0.83869 0.81536 0.83705 0.81001 0.91887 0.91940 0.92970 0.93895 0.93706 0.95795 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 7.89 59.85 0.47 1.44 16 2 N -0.57 -9.22 2.91 -172.46 -0.50 -9.72 16 3 C 0.56 9.04 7.66 -12.18 -0.09 8.95 16 4 O -0.54 -10.12 15.72 5.36 0.08 -10.04 16 5 C 0.12 1.54 6.62 -83.04 -0.55 0.99 16 6 C -0.14 -1.55 9.04 -38.86 -0.35 -1.90 16 7 C 0.18 1.71 6.65 -83.39 -0.55 1.15 16 8 N -0.40 -3.65 2.97 -60.74 -0.18 -3.83 16 9 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 10 C -0.19 -1.53 10.86 -39.76 -0.43 -1.97 16 11 C -0.18 -1.40 10.86 -39.76 -0.43 -1.83 16 12 C -0.02 -0.12 10.77 -16.63 -0.18 -0.30 16 13 C -0.18 -1.27 9.53 -39.16 -0.37 -1.64 16 14 C 0.12 0.90 11.17 -17.62 -0.20 0.70 16 15 N -0.46 -4.85 6.03 -9.87 -0.06 -4.91 16 16 C 0.12 2.27 3.44 -65.78 -0.23 2.05 16 17 H 0.11 2.25 7.02 -51.93 -0.36 1.89 16 18 C -0.15 -2.92 6.49 -24.90 -0.16 -3.08 16 19 C 0.18 4.37 5.38 -3.06 -0.02 4.36 16 20 N -0.60 -15.59 3.39 -170.08 -0.58 -16.17 16 21 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 24 N -0.92 -27.14 10.34 55.49 0.57 -26.56 16 25 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 C 0.13 2.83 6.79 -2.53 -0.02 2.81 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.91 6.36 -51.93 -0.33 0.58 16 32 H 0.10 1.19 5.26 -52.12 -0.27 0.91 16 33 H 0.15 1.73 6.44 -52.49 -0.34 1.40 16 34 H 0.17 1.30 7.09 -52.49 -0.37 0.93 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.17 0.75 7.08 -52.49 -0.37 0.38 16 38 H 0.15 0.59 6.83 -52.49 -0.36 0.23 16 39 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.10 6.48 -51.93 -0.34 0.76 16 42 H 0.05 1.42 7.25 -51.93 -0.38 1.04 16 43 H 0.04 1.14 7.64 -51.93 -0.40 0.74 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.02 0.50 6.94 -51.93 -0.36 0.14 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.69 371.04 -9.59 -43.29 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.96 Total: 0.55 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.54 Total: 4.56 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.75 Total: -61.19 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.69 -9.59 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033560716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.460 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds