Wall clock time and date at job start Sat Apr 11 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34768 * 120.00448 * 2 1 4 4 O 1.21511 * 120.00190 * 182.02546 * 3 2 1 5 5 C 1.48188 * 119.99955 * 2.01864 * 3 2 1 6 6 C 1.39117 * 119.69306 * 172.76641 * 5 3 2 7 7 C 1.39289 * 118.97326 * 179.70207 * 6 5 3 8 8 N 1.39907 * 120.82257 * 180.25550 * 7 6 5 9 9 C 1.36625 * 125.67409 * 359.69524 * 8 7 6 10 10 C 1.34824 * 108.19226 * 179.82771 * 9 8 7 11 11 C 1.40974 * 107.48017 * 0.43081 * 10 9 8 12 12 C 1.34818 * 107.48349 * 359.72819 * 11 10 9 13 13 C 1.39288 * 118.35357 * 0.28172 * 7 6 5 14 14 C 1.38329 * 119.27906 * 359.97438 * 13 7 6 15 15 N 1.31597 * 120.97438 * 0.02562 * 14 13 7 16 16 C 1.46505 * 119.99637 * 179.97438 * 2 1 3 17 17 H 1.09004 * 110.88415 * 176.12427 * 16 2 1 18 18 C 1.55157 * 111.00408 * 300.00004 * 16 2 1 19 19 C 1.54325 * 102.94248 * 153.57870 * 18 16 2 20 20 N 1.47022 * 107.27023 * 337.80711 * 19 18 16 21 21 C 1.36937 * 125.64926 * 178.92475 * 20 19 18 22 22 H 1.07996 * 119.99871 * 175.00606 * 21 20 19 23 23 C 1.38808 * 119.99964 * 354.99872 * 21 20 19 24 24 N 1.31623 * 119.99798 * 5.27541 * 23 21 20 25 25 Si 1.86794 * 120.00221 * 185.27195 * 23 21 20 26 26 H 1.48500 * 109.47512 * 94.99775 * 25 23 21 27 27 H 1.48500 * 109.47490 * 214.99990 * 25 23 21 28 28 H 1.48505 * 109.47054 * 335.00222 * 25 23 21 29 29 C 1.47426 * 108.70362 * 358.93819 * 20 19 18 30 30 H 1.08998 * 109.47051 * 83.76097 * 1 2 3 31 31 H 1.08996 * 109.47455 * 203.76407 * 1 2 3 32 32 H 1.08999 * 109.46998 * 323.76538 * 1 2 3 33 33 H 1.08000 * 120.51362 * 359.97438 * 6 5 3 34 34 H 1.07998 * 125.90890 * 0.02562 * 9 8 7 35 35 H 1.08004 * 126.25633 * 180.19593 * 10 9 8 36 36 H 1.08001 * 126.26067 * 179.77243 * 11 10 9 37 37 H 1.07995 * 125.90199 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.35757 * 180.02562 * 13 7 6 39 39 H 1.07995 * 119.50713 * 180.02562 * 14 13 7 40 40 H 1.09002 * 110.72294 * 271.93896 * 18 16 2 41 41 H 1.09007 * 110.72318 * 35.03692 * 18 16 2 42 42 H 1.08994 * 109.88458 * 97.22569 * 19 18 16 43 43 H 1.08997 * 109.88270 * 218.23858 * 19 18 16 44 44 H 0.97004 * 119.99471 * 179.97438 * 24 23 21 45 45 H 1.09000 * 110.36876 * 265.29290 * 29 20 19 46 46 H 1.08999 * 110.36297 * 142.96355 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3535 1.1673 -0.0372 5 6 1.3988 2.4501 0.0452 6 6 2.0972 3.6436 0.1972 7 6 1.3870 4.8413 0.2315 8 7 2.0506 6.0643 0.3775 9 6 3.4011 6.2279 0.5037 10 6 3.6564 7.5468 0.6183 11 6 2.4204 8.2231 0.5711 12 6 1.4554 7.2933 0.4234 13 6 -0.0003 4.7912 0.1174 14 6 -0.6235 3.5645 -0.0256 15 7 0.0747 2.4494 -0.0546 16 6 2.1974 -1.2688 0.0006 17 1 3.2717 -1.0974 -0.0683 18 6 1.8483 -2.1120 1.2554 19 6 2.1062 -3.5582 0.7827 20 7 2.0264 -3.5585 -0.6853 21 6 2.2170 -4.6464 -1.4948 22 1 2.0574 -4.5618 -2.5596 23 6 2.6156 -5.8579 -0.9468 24 7 2.7098 -5.9901 0.3593 25 14 3.0181 -7.3005 -2.0630 26 1 4.4810 -7.3381 -2.3155 27 1 2.5960 -8.5653 -1.4091 28 1 2.2972 -7.1452 -3.3521 29 6 1.7073 -2.1934 -1.1416 30 1 -0.3633 0.1117 -1.0216 31 1 -0.3634 -0.9405 0.4141 32 1 -0.3633 0.8289 0.6074 33 1 3.1738 3.6418 0.2828 34 1 4.1372 5.4377 0.5076 35 1 4.6296 8.0016 0.7301 36 1 2.2734 9.2908 0.6400 37 1 0.3952 7.4866 0.3530 38 1 -0.5830 5.7002 0.1395 39 1 -1.6989 3.5214 -0.1148 40 1 2.5042 -1.8554 2.0872 41 1 0.8033 -1.9749 1.5336 42 1 3.0978 -3.8807 1.1001 43 1 1.3497 -4.2243 1.1975 44 1 2.9880 -6.8368 0.7423 45 1 0.6324 -2.0827 -1.2846 46 1 2.2391 -1.9686 -2.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033560716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:39 Heat of formation + Delta-G solvation = 98.098713 kcal Electronic energy + Delta-G solvation = -28613.396085 eV Core-core repulsion = 24698.456282 eV Total energy + Delta-G solvation = -3914.939803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.81661 -41.69206 -40.30170 -38.93757 -36.46936 -35.16630 -34.04077 -32.75919 -31.17858 -30.77555 -29.97986 -29.18413 -27.87955 -26.71812 -25.42523 -24.82900 -22.80269 -22.07297 -21.39946 -21.15399 -20.49541 -19.45610 -18.95768 -18.40804 -17.40447 -17.05933 -16.88344 -16.71908 -16.68390 -16.03420 -15.87915 -15.75366 -15.25896 -14.94104 -14.62127 -14.53781 -14.47307 -14.22754 -14.07606 -13.89891 -13.61517 -13.32122 -13.24978 -13.05218 -12.93566 -12.89091 -12.76560 -12.36561 -12.12985 -12.02188 -11.84152 -11.59762 -11.58569 -11.40281 -10.72638 -10.48030 -10.35204 -9.68862 -9.42065 -9.29117 -8.93326 -7.88067 -5.24406 -0.61950 -0.26697 1.27052 1.45028 1.47986 1.53354 1.56906 1.68541 1.83921 2.00190 2.48612 2.68580 2.91291 3.30768 3.37675 3.52533 3.63971 3.73280 3.82859 3.89628 3.94800 4.08184 4.16239 4.23561 4.36309 4.41381 4.48843 4.53933 4.55719 4.64126 4.66784 4.78432 4.80248 4.85912 4.95028 5.04003 5.19283 5.24540 5.27627 5.38392 5.42868 5.56390 5.59245 5.70493 5.87835 6.09292 6.15518 6.25691 6.30539 6.58038 6.94537 7.06404 7.71757 8.36332 9.22460 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.002078 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.204752 B =13468.506531 C =13902.202791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.575 5.575 3 C 0.558 3.442 4 O -0.576 6.576 5 C 0.102 3.898 6 C -0.148 4.148 7 C 0.174 3.826 8 N -0.409 5.409 9 C -0.040 4.040 10 C -0.192 4.192 11 C -0.197 4.197 12 C -0.016 4.016 13 C -0.158 4.158 14 C 0.131 3.869 15 N -0.468 5.468 16 C 0.135 3.865 17 H 0.082 0.918 18 C -0.133 4.133 19 C 0.188 3.812 20 N -0.624 5.624 21 C -0.245 4.245 22 H 0.083 0.917 23 C -0.065 4.065 24 N -0.949 5.949 25 Si 0.981 3.019 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.135 3.865 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.202 0.798 38 H 0.185 0.815 39 H 0.218 0.782 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.248 0.752 45 H 0.043 0.957 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 30.580 1.855 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.304 5.304 3 C 0.346 3.654 4 O -0.456 6.456 5 C -0.035 4.035 6 C -0.171 4.171 7 C 0.073 3.927 8 N -0.082 5.082 9 C -0.165 4.165 10 C -0.216 4.216 11 C -0.221 4.221 12 C -0.140 4.140 13 C -0.180 4.180 14 C -0.027 4.027 15 N -0.182 5.182 16 C 0.030 3.970 17 H 0.101 0.899 18 C -0.172 4.172 19 C 0.063 3.937 20 N -0.351 5.351 21 C -0.374 4.374 22 H 0.101 0.899 23 C -0.258 4.258 24 N -0.597 5.597 25 Si 0.809 3.191 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.191 1.191 29 C 0.008 3.992 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.219 0.781 38 H 0.203 0.797 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.988 29.296 1.719 30.999 hybrid contribution 1.391 -0.585 -0.291 1.537 sum -8.597 28.711 1.428 30.005 Atomic orbital electron populations 1.22557 0.76114 1.04096 1.03786 1.47708 1.09151 1.04069 1.69501 1.18340 0.86328 0.83922 0.76802 1.90759 1.14731 1.87399 1.52705 1.20511 0.90720 0.91907 1.00363 1.21633 1.02156 0.90762 1.02547 1.18178 0.93095 0.84132 0.97308 1.41717 1.06800 1.04353 1.55351 1.22292 0.84031 0.99488 1.10716 1.21398 1.00013 0.92444 1.07765 1.21428 0.91959 1.00317 1.08386 1.22579 1.00926 0.81567 1.08930 1.22499 0.91221 1.02830 1.01444 1.23636 1.02572 0.85360 0.91170 1.68120 1.05463 1.31681 1.12902 1.22078 0.96488 0.82124 0.96337 0.89938 1.23058 1.02424 0.94954 0.96778 1.20882 0.98114 0.91565 0.83142 1.44652 1.83362 1.04318 1.02755 1.19440 1.38780 0.88426 0.90716 0.89916 1.25711 1.01848 1.00724 0.97505 1.70182 1.54091 1.25055 1.10410 0.85026 0.77731 0.78275 0.78081 1.21598 1.21835 1.19078 1.21828 0.98019 0.84242 0.95083 0.91741 0.91795 0.85895 0.84247 0.81570 0.82733 0.81844 0.78119 0.79732 0.76606 0.90800 0.89502 0.96699 0.96606 0.94228 0.93967 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 7.89 127.77 1.01 2.85 16 2 N -0.58 -18.31 2.91 -817.84 -2.38 -20.69 16 3 C 0.56 18.26 7.66 86.89 0.67 18.92 16 4 O -0.58 -22.94 15.72 -3.75 -0.06 -23.00 16 5 C 0.10 2.50 6.62 41.86 0.28 2.78 16 6 C -0.15 -3.30 9.04 22.73 0.21 -3.10 16 7 C 0.17 2.89 6.65 38.36 0.26 3.14 16 8 N -0.41 -6.69 2.97 -346.09 -1.03 -7.72 16 9 C -0.04 -0.72 10.77 83.16 0.90 0.17 16 10 C -0.19 -3.01 10.86 22.16 0.24 -2.77 16 11 C -0.20 -2.54 10.86 22.15 0.24 -2.30 16 12 C -0.02 -0.18 10.77 83.16 0.90 0.71 16 13 C -0.16 -1.48 9.53 22.54 0.21 -1.27 16 14 C 0.13 1.29 11.17 84.75 0.95 2.24 16 15 N -0.47 -8.59 6.03 -185.14 -1.12 -9.70 16 16 C 0.13 5.23 3.44 46.38 0.16 5.39 16 17 H 0.08 3.64 7.02 -2.38 -0.02 3.62 16 18 C -0.13 -5.17 6.49 31.78 0.21 -4.96 16 19 C 0.19 9.58 5.38 86.73 0.47 10.05 16 20 N -0.62 -33.18 3.39 -692.00 -2.35 -35.53 16 21 C -0.24 -14.08 10.27 84.03 0.86 -13.21 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 23 C -0.06 -3.75 5.48 84.86 0.47 -3.29 16 24 N -0.95 -57.94 10.34 21.65 0.22 -57.71 16 25 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 C 0.13 5.81 6.79 86.86 0.59 6.40 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.59 6.36 -2.39 -0.02 1.58 16 32 H 0.12 2.51 5.26 -2.76 -0.01 2.50 16 33 H 0.14 3.41 6.44 -2.91 -0.02 3.39 16 34 H 0.17 2.84 7.09 -2.91 -0.02 2.82 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.20 0.74 7.08 -2.91 -0.02 0.72 16 38 H 0.19 0.26 6.83 -2.91 -0.02 0.24 16 39 H 0.22 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.09 2.95 6.48 -2.38 -0.02 2.94 16 42 H 0.01 0.85 7.25 -2.39 -0.02 0.83 16 43 H 0.02 0.87 7.64 -2.39 -0.02 0.86 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.04 1.70 6.94 -2.39 -0.02 1.68 16 46 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.50 371.04 4.92 -72.58 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.00 Total: 11.44 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 8.60 Total: 21.76 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -6.65 Total: -131.36 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.06 Total: -23.00 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.50 4.92 -72.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033560716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.678 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds