Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00673 * 2 1 4 4 O 1.21515 * 120.00597 * 185.36401 * 3 2 1 5 5 C 1.48182 * 119.99493 * 5.36715 * 3 2 1 6 6 C 1.39121 * 119.68929 * 186.92874 * 5 3 2 7 7 C 1.39296 * 118.96844 * 179.79454 * 6 5 3 8 8 N 1.39914 * 120.81819 * 180.24718 * 7 6 5 9 9 C 1.36627 * 125.67669 * 359.92412 * 8 7 6 10 10 C 1.34818 * 108.19200 * 179.83467 * 9 8 7 11 11 C 1.40969 * 107.48427 * 0.42575 * 10 9 8 12 12 C 1.34817 * 107.47784 * 359.73525 * 11 10 9 13 13 C 1.39282 * 118.35991 * 0.47332 * 7 6 5 14 14 C 1.38323 * 119.27501 * 359.74884 * 13 7 6 15 15 N 1.31603 * 120.97901 * 0.02562 * 14 13 7 16 16 C 1.46506 * 119.99711 * 180.02562 * 2 1 3 17 17 H 1.09003 * 110.64304 * 178.31545 * 16 2 1 18 18 C 1.55153 * 110.72039 * 54.97455 * 16 2 1 19 19 C 1.55137 * 101.48192 * 205.97181 * 18 16 2 20 20 N 1.47419 * 104.72266 * 37.29467 * 19 18 16 21 21 C 1.36943 * 125.64549 * 155.81620 * 20 19 18 22 22 H 1.07994 * 120.00186 * 191.59043 * 21 20 19 23 23 C 1.38812 * 119.99872 * 11.58930 * 21 20 19 24 24 N 1.31614 * 119.99791 * 205.83177 * 23 21 20 25 25 Si 1.86799 * 120.00126 * 25.83385 * 23 21 20 26 26 H 1.48503 * 109.46921 * 269.99791 * 25 23 21 27 27 H 1.48495 * 109.47104 * 29.99759 * 25 23 21 28 28 H 1.48499 * 109.47194 * 149.99876 * 25 23 21 29 29 C 1.47014 * 108.70436 * 335.55483 * 20 19 18 30 30 H 1.09001 * 109.47029 * 275.42440 * 1 2 3 31 31 H 1.09005 * 109.46744 * 35.41765 * 1 2 3 32 32 H 1.09002 * 109.47708 * 155.41699 * 1 2 3 33 33 H 1.07999 * 120.51454 * 0.02562 * 6 5 3 34 34 H 1.08002 * 125.90349 * 359.95986 * 9 8 7 35 35 H 1.08005 * 126.25853 * 180.14287 * 10 9 8 36 36 H 1.07994 * 126.26354 * 179.75999 * 11 10 9 37 37 H 1.08008 * 125.90108 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.35804 * 179.72523 * 13 7 6 39 39 H 1.08002 * 119.51426 * 179.97438 * 14 13 7 40 40 H 1.09005 * 111.00375 * 324.20746 * 18 16 2 41 41 H 1.08996 * 111.00884 * 88.02494 * 18 16 2 42 42 H 1.08998 * 110.49616 * 278.44591 * 19 18 16 43 43 H 1.09000 * 110.33821 * 156.06331 * 19 18 16 44 44 H 0.97006 * 120.00550 * 354.93812 * 24 23 21 45 45 H 1.09005 * 109.88507 * 120.70893 * 29 20 19 46 46 H 1.09008 * 109.88067 * 241.86683 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3501 1.1694 -0.0984 5 6 1.4029 2.4476 0.1200 6 6 2.0856 3.6510 -0.0254 7 6 1.3782 4.8458 0.0861 8 7 2.0250 6.0780 -0.0585 9 6 3.3560 6.2544 -0.3112 10 6 3.5984 7.5786 -0.3855 11 6 2.3771 8.2459 -0.1616 12 6 1.4318 7.3051 0.0355 13 6 0.0119 4.7835 0.3497 14 6 -0.5950 3.5481 0.4861 15 7 0.0991 2.4359 0.3709 16 6 2.1974 -1.2688 -0.0006 17 1 3.2725 -1.0919 -0.0305 18 6 1.7505 -2.1601 -1.1893 19 6 2.0689 -3.5788 -0.6484 20 7 1.7322 -3.5173 0.7855 21 6 1.4001 -4.5867 1.5739 22 1 0.9898 -4.4241 2.5595 23 6 1.5908 -5.8796 1.1061 24 7 0.8542 -6.8644 1.5748 25 14 2.8931 -6.2218 -0.1887 26 1 2.2942 -6.0866 -1.5408 27 1 4.0057 -5.2495 -0.0406 28 1 3.4145 -7.6012 -0.0138 29 6 1.8180 -2.1187 1.2304 30 1 -0.3633 0.0971 1.0231 31 1 -0.3633 0.8376 -0.5956 32 1 -0.3634 -0.9345 -0.4275 33 1 3.1469 3.6587 -0.2254 34 1 4.0872 5.4689 -0.4326 35 1 4.5545 8.0432 -0.5766 36 1 2.2261 9.3152 -0.1504 37 1 0.3861 7.4896 0.2331 38 1 -0.5671 5.6900 0.4469 39 1 -1.6541 3.4953 0.6910 40 1 0.6847 -2.0434 -1.3861 41 1 2.3366 -1.9431 -2.0823 42 1 3.1260 -3.8092 -0.7803 43 1 1.4519 -4.3234 -1.1514 44 1 0.2294 -6.7008 2.2987 45 1 0.8539 -1.7944 1.6221 46 1 2.5847 -2.0207 1.9992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033560717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 117.188640 kcal Electronic energy + Delta-G solvation = -28737.159127 eV Core-core repulsion = 24823.047126 eV Total energy + Delta-G solvation = -3914.112002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22301 -40.81279 -39.35309 -37.61703 -35.23347 -34.35872 -32.46747 -31.94872 -30.23875 -29.59149 -29.31792 -28.18086 -26.81209 -25.13722 -24.24322 -23.64142 -21.86681 -20.85963 -20.69174 -20.26026 -19.41453 -18.59988 -17.47904 -17.42925 -16.43967 -16.40198 -16.06601 -15.78292 -15.26997 -15.19774 -14.88638 -14.55359 -14.27980 -13.99218 -13.76538 -13.50571 -13.41772 -13.15518 -12.96749 -12.80202 -12.59046 -12.47865 -12.37578 -12.09563 -11.69754 -11.33456 -11.10823 -11.02131 -10.91903 -10.71505 -10.36810 -9.99388 -9.79047 -9.63370 -9.58758 -9.25795 -8.84211 -8.74605 -8.53357 -8.43681 -7.08480 -6.32294 -3.19138 0.09018 0.37935 1.90591 2.17622 2.53902 2.56878 2.85929 3.42534 3.44161 3.54857 3.68792 3.73745 3.99580 4.11388 4.42980 4.46503 4.60208 4.64386 4.76624 4.89281 5.01846 5.04724 5.10646 5.18838 5.20234 5.29514 5.32374 5.39265 5.44652 5.58544 5.73035 5.76539 5.79268 5.85480 5.88742 5.97210 6.12283 6.26922 6.40878 6.42445 6.49969 6.56329 6.64835 6.74203 6.76106 6.84498 7.24050 7.40509 7.70436 8.03045 8.34449 9.03951 9.58958 10.25611 11.15948 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.002208 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238876 B =12676.311589 C =13245.904952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.577 5.577 3 C 0.565 3.435 4 O -0.535 6.535 5 C 0.118 3.882 6 C -0.137 4.137 7 C 0.182 3.818 8 N -0.401 5.401 9 C -0.011 4.011 10 C -0.186 4.186 11 C -0.184 4.184 12 C -0.016 4.016 13 C -0.179 4.179 14 C 0.125 3.875 15 N -0.458 5.458 16 C 0.123 3.877 17 H 0.108 0.892 18 C -0.139 4.139 19 C 0.107 3.893 20 N -0.606 5.606 21 C -0.327 4.327 22 H 0.076 0.924 23 C -0.020 4.020 24 N -0.919 5.919 25 Si 1.063 2.937 26 H -0.293 1.293 27 H -0.287 1.287 28 H -0.298 1.298 29 C 0.130 3.870 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.173 0.827 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.262 0.738 45 H 0.036 0.964 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 30.299 -5.618 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.306 5.306 3 C 0.351 3.649 4 O -0.412 6.412 5 C -0.020 4.020 6 C -0.160 4.160 7 C 0.080 3.920 8 N -0.074 5.074 9 C -0.136 4.136 10 C -0.209 4.209 11 C -0.208 4.208 12 C -0.141 4.141 13 C -0.201 4.201 14 C -0.034 4.034 15 N -0.171 5.171 16 C 0.020 3.980 17 H 0.126 0.874 18 C -0.178 4.178 19 C -0.019 4.019 20 N -0.334 5.334 21 C -0.454 4.454 22 H 0.093 0.907 23 C -0.221 4.221 24 N -0.560 5.560 25 Si 0.895 3.105 26 H -0.221 1.221 27 H -0.213 1.213 28 H -0.226 1.226 29 C 0.003 3.997 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.190 0.810 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.524 27.943 -6.416 28.710 hybrid contribution -0.291 2.171 1.040 2.425 sum -1.814 30.114 -5.376 30.644 Atomic orbital electron populations 1.22123 0.77952 1.02645 1.02917 1.47707 1.08133 1.05059 1.69738 1.17789 0.86459 0.82841 0.77803 1.90785 1.13068 1.86631 1.50742 1.21075 0.90040 0.93477 0.97397 1.21736 1.02455 0.89985 1.01820 1.18024 0.92244 0.84556 0.97143 1.41591 1.08194 1.03628 1.53994 1.22096 0.84149 0.98770 1.08582 1.21084 0.99138 0.92479 1.08241 1.21072 0.92825 0.99038 1.07862 1.21954 0.99619 0.82424 1.10116 1.22039 0.92805 1.01198 1.04106 1.22864 1.00755 0.86290 0.93459 1.68244 1.06625 1.30686 1.11511 1.22341 0.97390 0.81382 0.96900 0.87400 1.23164 1.01739 0.96110 0.96796 1.22039 0.98511 0.94945 0.86361 1.44767 1.82018 1.02233 1.04372 1.20018 1.39904 0.84618 1.00873 0.90660 1.25860 1.01310 0.91022 1.03868 1.70915 1.23300 1.34800 1.26986 0.83869 0.76830 0.74663 0.75181 1.22098 1.21334 1.22614 1.21564 0.98698 0.85715 0.93747 0.91957 0.89478 0.91220 0.82773 0.81308 0.83775 0.83840 0.81518 0.83645 0.80966 0.90524 0.91110 0.94893 0.91770 0.92724 0.94634 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 7.86 59.84 0.47 1.58 16 2 N -0.58 -8.81 2.88 -172.82 -0.50 -9.30 16 3 C 0.57 8.62 7.65 -12.18 -0.09 8.53 16 4 O -0.54 -9.48 15.72 5.35 0.08 -9.39 16 5 C 0.12 1.45 6.55 -83.04 -0.54 0.90 16 6 C -0.14 -1.48 9.04 -38.86 -0.35 -1.83 16 7 C 0.18 1.65 6.65 -83.39 -0.55 1.09 16 8 N -0.40 -3.53 2.97 -60.74 -0.18 -3.71 16 9 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 10 C -0.19 -1.47 10.86 -39.76 -0.43 -1.90 16 11 C -0.18 -1.36 10.86 -39.76 -0.43 -1.79 16 12 C -0.02 -0.12 10.77 -16.63 -0.18 -0.30 16 13 C -0.18 -1.23 9.53 -39.16 -0.37 -1.60 16 14 C 0.12 0.91 11.17 -17.62 -0.20 0.71 16 15 N -0.46 -4.79 6.18 -9.87 -0.06 -4.85 16 16 C 0.12 2.17 3.36 -66.09 -0.22 1.95 16 17 H 0.11 2.00 7.00 -51.93 -0.36 1.64 16 18 C -0.14 -2.39 6.60 -24.46 -0.16 -2.56 16 19 C 0.11 2.33 4.71 -2.41 -0.01 2.32 16 20 N -0.61 -14.98 3.27 -169.93 -0.56 -15.54 16 21 C -0.33 -9.40 10.43 -15.06 -0.16 -9.55 16 22 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 23 C -0.02 -0.59 5.41 -17.43 -0.09 -0.69 16 24 N -0.92 -28.75 13.70 55.49 0.76 -27.99 16 25 Si 1.06 26.75 24.70 -169.99 -4.20 22.56 16 26 H -0.29 -6.92 6.59 56.52 0.37 -6.54 16 27 H -0.29 -6.91 6.28 56.52 0.35 -6.56 16 28 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 29 C 0.13 2.70 6.88 -3.07 -0.02 2.68 16 30 H 0.06 0.81 7.92 -51.93 -0.41 0.39 16 31 H 0.09 0.98 5.80 -51.93 -0.30 0.68 16 32 H 0.07 0.93 6.13 -51.93 -0.32 0.62 16 33 H 0.15 1.64 6.44 -52.49 -0.34 1.30 16 34 H 0.17 1.23 7.09 -52.49 -0.37 0.85 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.17 0.72 7.08 -52.48 -0.37 0.35 16 38 H 0.15 0.57 6.83 -52.49 -0.36 0.21 16 39 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.73 5.67 -51.93 -0.29 0.44 16 43 H 0.06 1.47 6.17 -51.93 -0.32 1.15 16 44 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 45 H 0.04 0.74 7.07 -51.93 -0.37 0.37 16 46 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -34.70 365.08 -8.58 -43.28 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.90 Total: 0.17 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.53 Total: -0.73 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.54 Total: -61.40 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.20 Total: 22.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.70 -8.58 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033560717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.472 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds