Wall clock time and date at job start Sat Apr 11 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00673 * 2 1 4 4 O 1.21515 * 120.00597 * 185.36401 * 3 2 1 5 5 C 1.48182 * 119.99493 * 5.36715 * 3 2 1 6 6 C 1.39121 * 119.68929 * 186.92874 * 5 3 2 7 7 C 1.39296 * 118.96844 * 179.79454 * 6 5 3 8 8 N 1.39914 * 120.81819 * 180.24718 * 7 6 5 9 9 C 1.36627 * 125.67669 * 359.92412 * 8 7 6 10 10 C 1.34818 * 108.19200 * 179.83467 * 9 8 7 11 11 C 1.40969 * 107.48427 * 0.42575 * 10 9 8 12 12 C 1.34817 * 107.47784 * 359.73525 * 11 10 9 13 13 C 1.39282 * 118.35991 * 0.47332 * 7 6 5 14 14 C 1.38323 * 119.27501 * 359.74884 * 13 7 6 15 15 N 1.31603 * 120.97901 * 0.02562 * 14 13 7 16 16 C 1.46506 * 119.99711 * 180.02562 * 2 1 3 17 17 H 1.09003 * 110.64304 * 178.31545 * 16 2 1 18 18 C 1.55153 * 110.72039 * 54.97455 * 16 2 1 19 19 C 1.55137 * 101.48192 * 205.97181 * 18 16 2 20 20 N 1.47419 * 104.72266 * 37.29467 * 19 18 16 21 21 C 1.36943 * 125.64549 * 155.81620 * 20 19 18 22 22 H 1.07994 * 120.00186 * 191.59043 * 21 20 19 23 23 C 1.38812 * 119.99872 * 11.58930 * 21 20 19 24 24 N 1.31614 * 119.99791 * 205.83177 * 23 21 20 25 25 Si 1.86799 * 120.00126 * 25.83385 * 23 21 20 26 26 H 1.48503 * 109.46921 * 269.99791 * 25 23 21 27 27 H 1.48495 * 109.47104 * 29.99759 * 25 23 21 28 28 H 1.48499 * 109.47194 * 149.99876 * 25 23 21 29 29 C 1.47014 * 108.70436 * 335.55483 * 20 19 18 30 30 H 1.09001 * 109.47029 * 275.42440 * 1 2 3 31 31 H 1.09005 * 109.46744 * 35.41765 * 1 2 3 32 32 H 1.09002 * 109.47708 * 155.41699 * 1 2 3 33 33 H 1.07999 * 120.51454 * 0.02562 * 6 5 3 34 34 H 1.08002 * 125.90349 * 359.95986 * 9 8 7 35 35 H 1.08005 * 126.25853 * 180.14287 * 10 9 8 36 36 H 1.07994 * 126.26354 * 179.75999 * 11 10 9 37 37 H 1.08008 * 125.90108 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.35804 * 179.72523 * 13 7 6 39 39 H 1.08002 * 119.51426 * 179.97438 * 14 13 7 40 40 H 1.09005 * 111.00375 * 324.20746 * 18 16 2 41 41 H 1.08996 * 111.00884 * 88.02494 * 18 16 2 42 42 H 1.08998 * 110.49616 * 278.44591 * 19 18 16 43 43 H 1.09000 * 110.33821 * 156.06331 * 19 18 16 44 44 H 0.97006 * 120.00550 * 354.93812 * 24 23 21 45 45 H 1.09005 * 109.88507 * 120.70893 * 29 20 19 46 46 H 1.09008 * 109.88067 * 241.86683 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3501 1.1694 -0.0984 5 6 1.4029 2.4476 0.1200 6 6 2.0856 3.6510 -0.0254 7 6 1.3782 4.8458 0.0861 8 7 2.0250 6.0780 -0.0585 9 6 3.3560 6.2544 -0.3112 10 6 3.5984 7.5786 -0.3855 11 6 2.3771 8.2459 -0.1616 12 6 1.4318 7.3051 0.0355 13 6 0.0119 4.7835 0.3497 14 6 -0.5950 3.5481 0.4861 15 7 0.0991 2.4359 0.3709 16 6 2.1974 -1.2688 -0.0006 17 1 3.2725 -1.0919 -0.0305 18 6 1.7505 -2.1601 -1.1893 19 6 2.0689 -3.5788 -0.6484 20 7 1.7322 -3.5173 0.7855 21 6 1.4001 -4.5867 1.5739 22 1 0.9898 -4.4241 2.5595 23 6 1.5908 -5.8796 1.1061 24 7 0.8542 -6.8644 1.5748 25 14 2.8931 -6.2218 -0.1887 26 1 2.2942 -6.0866 -1.5408 27 1 4.0057 -5.2495 -0.0406 28 1 3.4145 -7.6012 -0.0138 29 6 1.8180 -2.1187 1.2304 30 1 -0.3633 0.0971 1.0231 31 1 -0.3633 0.8376 -0.5956 32 1 -0.3634 -0.9345 -0.4275 33 1 3.1469 3.6587 -0.2254 34 1 4.0872 5.4689 -0.4326 35 1 4.5545 8.0432 -0.5766 36 1 2.2261 9.3152 -0.1504 37 1 0.3861 7.4896 0.2331 38 1 -0.5671 5.6900 0.4469 39 1 -1.6541 3.4953 0.6910 40 1 0.6847 -2.0434 -1.3861 41 1 2.3366 -1.9431 -2.0823 42 1 3.1260 -3.8092 -0.7803 43 1 1.4519 -4.3234 -1.1514 44 1 0.2294 -6.7008 2.2987 45 1 0.8539 -1.7944 1.6221 46 1 2.5847 -2.0207 1.9992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033560717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:42 Heat of formation + Delta-G solvation = 95.872665 kcal Electronic energy + Delta-G solvation = -28738.083457 eV Core-core repulsion = 24823.047126 eV Total energy + Delta-G solvation = -3915.036332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.83232 -41.73719 -40.39623 -39.11284 -36.54954 -35.19938 -34.33650 -32.84519 -31.36998 -30.79314 -30.03744 -29.67995 -27.93102 -26.43181 -25.21838 -24.83386 -22.92959 -22.51969 -21.40024 -21.15838 -20.49906 -19.55610 -19.49213 -18.46277 -17.59695 -17.11824 -16.99646 -16.79209 -16.67803 -16.14302 -15.95302 -15.61543 -15.34542 -15.30214 -14.99519 -14.64845 -14.52783 -14.51073 -14.32699 -13.85937 -13.59564 -13.31907 -13.23560 -13.07158 -13.02975 -12.98618 -12.90369 -12.53638 -12.38514 -11.78041 -11.61850 -11.57722 -11.43562 -11.28517 -10.65992 -10.51353 -10.47226 -9.75723 -9.43705 -9.30300 -9.19047 -8.64929 -5.45646 -0.64545 -0.28710 1.24170 1.40531 1.50491 1.54501 1.64286 1.70348 1.81055 1.99110 2.50897 2.65834 2.86658 3.04055 3.33574 3.40218 3.50330 3.61708 3.72021 3.75110 3.88883 4.02278 4.09750 4.21968 4.25650 4.30400 4.39108 4.43575 4.47171 4.53308 4.65016 4.72567 4.75750 4.77099 4.81732 4.92453 4.95326 5.04958 5.16414 5.23451 5.26350 5.33022 5.44479 5.55709 5.86652 6.08338 6.08823 6.18952 6.28722 6.55115 6.80144 6.89477 7.43480 8.09415 8.83469 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.002208 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238876 B =12676.311589 C =13245.904952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.579 5.579 3 C 0.563 3.437 4 O -0.569 6.569 5 C 0.098 3.902 6 C -0.145 4.145 7 C 0.174 3.826 8 N -0.409 5.409 9 C -0.039 4.039 10 C -0.192 4.192 11 C -0.197 4.197 12 C -0.017 4.017 13 C -0.158 4.158 14 C 0.130 3.870 15 N -0.472 5.472 16 C 0.136 3.864 17 H 0.099 0.901 18 C -0.123 4.123 19 C 0.098 3.902 20 N -0.625 5.625 21 C -0.319 4.319 22 H 0.043 0.957 23 C -0.073 4.073 24 N -0.951 5.951 25 Si 1.103 2.897 26 H -0.265 1.265 27 H -0.272 1.272 28 H -0.304 1.304 29 C 0.130 3.870 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.200 0.800 38 H 0.184 0.816 39 H 0.213 0.787 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.037 0.963 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 33.625 -7.245 34.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.308 5.308 3 C 0.351 3.649 4 O -0.448 6.448 5 C -0.039 4.039 6 C -0.168 4.168 7 C 0.072 3.928 8 N -0.082 5.082 9 C -0.164 4.164 10 C -0.216 4.216 11 C -0.221 4.221 12 C -0.142 4.142 13 C -0.180 4.180 14 C -0.029 4.029 15 N -0.185 5.185 16 C 0.032 3.968 17 H 0.117 0.883 18 C -0.161 4.161 19 C -0.027 4.027 20 N -0.353 5.353 21 C -0.448 4.448 22 H 0.061 0.939 23 C -0.268 4.268 24 N -0.595 5.595 25 Si 0.929 3.071 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.232 1.232 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.217 0.783 38 H 0.201 0.799 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.848 31.327 -8.057 32.471 hybrid contribution 0.044 1.352 1.668 2.147 sum -2.804 32.678 -6.389 33.415 Atomic orbital electron populations 1.22215 0.76388 1.03234 1.03214 1.47701 1.08933 1.04218 1.69968 1.18273 0.86275 0.83749 0.76629 1.90753 1.14648 1.87290 1.52140 1.20543 0.90952 0.92036 1.00338 1.21658 1.02190 0.90581 1.02415 1.18171 0.93192 0.84101 0.97322 1.41715 1.08241 1.03965 1.54315 1.22309 0.84745 0.99351 1.09966 1.21401 1.00190 0.92447 1.07591 1.21427 0.92547 1.00219 1.07875 1.22563 1.01100 0.81575 1.08925 1.22484 0.91759 1.02616 1.01119 1.23546 1.02119 0.85426 0.91808 1.68134 1.05768 1.32561 1.12021 1.21970 0.97261 0.82254 0.95327 0.88274 1.23092 1.03176 0.92627 0.97239 1.22192 0.98316 0.97630 0.84525 1.44815 1.82081 1.02609 1.05754 1.19891 1.38545 0.86259 1.00084 0.93923 1.27085 1.02464 0.91024 1.06204 1.71026 1.24733 1.35735 1.27959 0.83350 0.74866 0.74396 0.74530 1.19044 1.19814 1.23235 1.21606 0.98269 0.84571 0.95172 0.92130 0.87416 0.91683 0.83890 0.81333 0.82658 0.81902 0.78296 0.79870 0.77015 0.89164 0.88179 0.94592 0.92695 0.94191 0.94515 0.96586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 7.86 127.77 1.00 3.20 16 2 N -0.58 -17.16 2.88 -818.98 -2.36 -19.52 16 3 C 0.56 17.03 7.65 86.89 0.66 17.69 16 4 O -0.57 -20.51 15.72 -3.76 -0.06 -20.57 16 5 C 0.10 2.31 6.55 41.86 0.27 2.58 16 6 C -0.15 -3.06 9.04 22.74 0.21 -2.85 16 7 C 0.17 2.77 6.65 38.36 0.26 3.02 16 8 N -0.41 -6.41 2.97 -346.08 -1.03 -7.43 16 9 C -0.04 -0.65 10.77 83.16 0.90 0.24 16 10 C -0.19 -2.84 10.86 22.15 0.24 -2.60 16 11 C -0.20 -2.44 10.86 22.15 0.24 -2.20 16 12 C -0.02 -0.20 10.77 83.16 0.90 0.70 16 13 C -0.16 -1.49 9.53 22.54 0.21 -1.28 16 14 C 0.13 1.34 11.17 84.75 0.95 2.29 16 15 N -0.47 -8.70 6.18 -185.13 -1.14 -9.85 16 16 C 0.14 4.71 3.36 46.18 0.15 4.86 16 17 H 0.10 3.65 7.00 -2.39 -0.02 3.63 16 18 C -0.12 -3.96 6.60 32.06 0.21 -3.75 16 19 C 0.10 4.13 4.71 86.94 0.41 4.54 16 20 N -0.62 -31.04 3.27 -691.55 -2.26 -33.30 16 21 C -0.32 -18.87 10.43 84.03 0.88 -18.00 16 22 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 23 C -0.07 -4.41 5.41 84.86 0.46 -3.95 16 24 N -0.95 -61.25 13.70 21.65 0.30 -60.95 16 25 Si 1.10 53.97 24.70 68.60 1.69 55.66 16 26 H -0.26 -11.68 6.59 99.48 0.66 -11.02 16 27 H -0.27 -12.55 6.28 99.48 0.62 -11.93 16 28 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 29 C 0.13 5.48 6.88 86.73 0.60 6.08 16 30 H 0.06 1.48 7.92 -2.39 -0.02 1.46 16 31 H 0.11 2.17 5.80 -2.38 -0.01 2.16 16 32 H 0.06 1.62 6.13 -2.39 -0.01 1.61 16 33 H 0.14 3.20 6.44 -2.91 -0.02 3.19 16 34 H 0.17 2.61 7.09 -2.91 -0.02 2.59 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.20 0.74 7.08 -2.91 -0.02 0.72 16 38 H 0.18 0.32 6.83 -2.91 -0.02 0.30 16 39 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.09 2.69 6.14 -2.38 -0.01 2.67 16 41 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.04 1.52 5.67 -2.39 -0.01 1.51 16 43 H 0.05 2.42 6.17 -2.39 -0.01 2.40 16 44 H 0.25 16.10 8.73 -92.70 -0.81 15.29 16 45 H 0.04 1.53 7.07 -2.38 -0.02 1.52 16 46 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -78.71 365.08 4.52 -74.18 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.84 Total: 11.20 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 8.55 Total: 10.58 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -6.50 Total: -131.06 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 1.69 Total: 55.66 kcal Total: -78.71 4.52 -74.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033560717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.058 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds