Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47045 * 240.00125 * 3 2 1 5 5 H 1.48502 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47544 * 119.99920 * 3 2 1 7 7 C 1.38814 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 196.90792 * 7 2 1 9 9 N 1.36939 * 119.99680 * 16.91497 * 7 2 1 10 10 C 1.47155 * 120.98449 * 26.23370 * 9 7 2 11 11 C 1.53287 * 108.38429 * 129.45146 * 10 9 7 12 12 O 1.42962 * 109.22505 * 52.30075 * 11 10 9 13 13 C 1.42963 * 114.16744 * 297.42215 * 12 11 10 14 14 H 1.08994 * 109.51052 * 302.59875 * 13 12 11 15 15 C 1.52999 * 109.51304 * 182.50206 * 13 12 11 16 16 N 1.46501 * 109.47337 * 65.09951 * 15 13 12 17 17 C 1.34777 * 119.99959 * 180.02562 * 16 15 13 18 18 O 1.21273 * 120.00372 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99583 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.89279 * 304.59986 * 19 17 16 21 21 O 1.43549 * 109.89771 * 183.54451 * 19 17 16 22 22 C 1.44100 * 109.79220 * 240.44197 * 21 19 17 23 23 C 1.54234 * 104.35206 * 335.23961 * 22 21 19 24 24 H 1.09002 * 109.92646 * 283.11230 * 23 22 21 25 25 C 1.50857 * 112.40440 * 159.67018 * 23 22 21 26 26 O 1.42678 * 111.77661 * 295.96990 * 25 23 22 27 27 C 1.43228 * 112.61159 * 299.64252 * 26 25 23 28 28 C 1.52727 * 108.32074 * 65.29653 * 27 26 25 29 29 C 1.53103 * 110.57014 * 299.87952 * 28 27 26 30 30 H 1.08996 * 112.39091 * 283.49265 * 29 28 27 31 31 C 1.47165 * 120.93804 * 206.18943 * 9 7 2 32 32 H 0.97001 * 120.00187 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.67745 * 9.72776 * 10 9 7 34 34 H 1.09002 * 109.71189 * 249.19369 * 10 9 7 35 35 H 1.08998 * 109.51624 * 292.37765 * 11 10 9 36 36 H 1.08998 * 109.55569 * 172.24914 * 11 10 9 37 37 H 1.09003 * 109.47076 * 305.10229 * 15 13 12 38 38 H 1.09002 * 109.47408 * 185.10325 * 15 13 12 39 39 H 0.96996 * 119.99701 * 359.97438 * 16 15 13 40 40 H 1.09007 * 110.47954 * 93.98813 * 22 21 19 41 41 H 1.08998 * 110.48171 * 216.48655 * 22 21 19 42 42 H 1.08994 * 109.05882 * 175.33332 * 25 23 22 43 43 H 1.09005 * 108.86759 * 56.47901 * 25 23 22 44 44 H 1.09002 * 109.69437 * 305.58562 * 27 26 25 45 45 H 1.09008 * 109.73000 * 185.02480 * 27 26 25 46 46 H 1.09001 * 109.25443 * 179.60099 * 28 27 26 47 47 H 1.08995 * 109.25649 * 60.16599 * 28 27 26 48 48 H 1.08998 * 109.64809 * 110.80522 * 31 9 7 49 49 H 1.09000 * 109.73005 * 350.24060 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2222 0.2726 9 7 1.3700 -2.3625 -0.3440 10 6 0.1975 -2.3456 -1.2330 11 6 0.4249 -3.3675 -2.3527 12 8 0.7658 -4.6302 -1.7755 13 6 1.9820 -4.6211 -1.0241 14 1 2.8011 -4.2883 -1.6615 15 6 2.2755 -6.0318 -0.5097 16 7 2.5308 -6.9222 -1.6446 17 6 2.8132 -8.2226 -1.4307 18 8 2.8566 -8.6555 -0.2987 19 6 3.0764 -9.1384 -2.5983 20 1 2.2369 -9.1048 -3.2926 21 8 3.2706 -10.4819 -2.1313 22 6 4.5855 -10.9415 -2.5006 23 6 4.9563 -10.0901 -3.7320 24 1 4.4329 -10.4627 -4.6126 25 6 6.4440 -10.0544 -3.9796 26 8 7.1434 -9.4190 -2.9105 27 6 6.7346 -8.0602 -2.7157 28 6 5.2759 -8.0579 -2.2630 29 6 4.3831 -8.7111 -3.3215 30 1 4.1982 -8.0542 -4.1714 31 6 1.8355 -3.6630 0.1637 32 1 -0.4850 0.8400 0.0004 33 1 0.0769 -1.3511 -1.6626 34 1 -0.6959 -2.6124 -0.6684 35 1 1.2383 -3.0293 -2.9947 36 1 -0.4857 -3.4709 -2.9428 37 1 1.4178 -6.3986 0.0542 38 1 3.1522 -6.0075 0.1375 39 1 2.4957 -6.5761 -2.5501 40 1 5.2924 -10.7667 -1.6894 41 1 4.5603 -11.9993 -2.7620 42 1 6.6380 -9.5107 -4.9041 43 1 6.8084 -11.0763 -4.0851 44 1 6.8295 -7.5102 -3.6520 45 1 7.3571 -7.5945 -1.9516 46 1 4.9508 -7.0299 -2.1032 47 1 5.1889 -8.6113 -1.3280 48 1 1.1078 -4.0626 0.8700 49 1 2.7993 -3.5414 0.6582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035454978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = -140.772660 kcal Electronic energy + Delta-G solvation = -31196.268974 eV Core-core repulsion = 26931.369261 eV Total energy + Delta-G solvation = -4264.899714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49842 -39.34066 -38.48359 -37.65887 -34.95762 -34.36255 -33.50167 -32.30079 -31.57234 -30.76336 -29.25134 -27.47259 -25.89203 -25.54491 -23.93025 -23.46105 -23.12326 -21.76328 -20.42883 -19.97049 -19.54790 -17.59541 -17.37184 -16.89994 -16.72955 -16.27279 -16.07940 -15.82502 -15.57236 -15.14325 -15.03849 -14.69709 -14.38708 -14.26652 -13.99349 -13.83170 -13.39956 -13.28117 -13.17967 -13.07658 -12.81275 -12.65421 -12.46197 -12.16724 -11.98607 -11.61083 -11.36851 -11.16610 -11.07048 -10.88596 -10.77874 -10.67481 -10.47965 -10.43387 -10.33355 -10.02914 -9.94489 -9.74804 -9.41748 -9.12155 -8.99841 -8.58870 -6.80930 -5.89103 -3.33003 2.54877 2.93826 3.31495 3.37579 3.38153 3.48068 3.56184 3.74620 4.15266 4.18881 4.31706 4.38999 4.50688 4.56847 4.74201 4.79225 4.89247 4.94046 5.07556 5.08591 5.13107 5.18750 5.23811 5.28371 5.37235 5.41494 5.43764 5.47084 5.57964 5.67313 5.74306 5.79609 5.88649 5.98169 6.09835 6.23509 6.31129 6.43075 6.44508 6.54733 6.70472 6.71191 7.04836 7.46310 7.50473 7.65345 7.79595 8.22230 8.28359 9.06286 9.68955 10.25619 11.19063 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.002471 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.666110 B =11327.589425 C =12063.464745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.066 3.934 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.720 5.720 17 C 0.505 3.495 18 O -0.526 6.526 19 C 0.065 3.935 20 H 0.105 0.895 21 O -0.350 6.350 22 C 0.057 3.943 23 C -0.155 4.155 24 H 0.098 0.902 25 C 0.072 3.928 26 O -0.374 6.374 27 C 0.061 3.939 28 C -0.166 4.166 29 C -0.106 4.106 30 H 0.108 0.892 31 C 0.121 3.879 32 H 0.256 0.744 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.030 0.970 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -18.444 -12.212 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.006 3.994 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.373 5.373 17 C 0.290 3.710 18 O -0.402 6.402 19 C 0.004 3.996 20 H 0.123 0.877 21 O -0.268 6.268 22 C -0.020 4.020 23 C -0.174 4.174 24 H 0.117 0.883 25 C -0.005 4.005 26 O -0.292 6.292 27 C -0.016 4.016 28 C -0.204 4.204 29 C -0.125 4.125 30 H 0.127 0.873 31 C -0.006 4.006 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.048 0.952 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.244 -18.977 -11.127 24.266 hybrid contribution 0.203 1.671 -0.659 1.808 sum 10.447 -17.306 -11.786 23.400 Atomic orbital electron populations 1.70023 1.05287 1.25845 1.53504 1.25053 0.95349 0.98505 1.00678 0.86314 0.78876 0.83062 0.78184 1.20969 1.21523 1.20771 1.19152 0.92628 0.84462 1.42434 0.91373 1.44063 1.33563 1.00987 1.53146 1.21442 0.89139 0.98310 0.89748 1.23323 0.98999 0.84898 0.96577 1.87794 1.41230 1.32594 1.69277 1.22793 0.87494 0.93801 0.95291 0.92425 1.21419 1.01668 0.87822 0.88379 1.45958 1.71731 1.08821 1.10781 1.20694 0.76818 0.82569 0.90926 1.90723 1.50404 1.75295 1.23754 1.22964 0.99147 0.84009 0.93490 0.87711 1.88671 1.32707 1.25712 1.79713 1.23411 0.84755 0.98351 0.95448 1.22876 0.98391 0.95642 1.00484 0.88336 1.21813 0.89563 0.99023 0.90113 1.88143 1.61841 1.25711 1.53549 1.22597 0.94499 0.83341 1.01139 1.22426 0.95882 1.02741 0.99337 1.22828 0.93794 0.97253 0.98622 0.87339 1.21446 0.98959 0.87234 0.92945 0.93391 0.88759 0.95352 0.94139 0.90035 0.90642 0.90172 0.76441 0.91001 0.89132 0.92570 0.88463 0.92579 0.88309 0.89644 0.89774 0.95213 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.14 55.49 0.62 -24.99 16 2 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.52 3.05 -171.82 -0.52 -15.04 16 10 C 0.14 3.24 5.45 -3.54 -0.02 3.22 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -6.99 10.33 -35.23 -0.36 -7.35 16 13 C 0.07 1.10 2.81 -26.58 -0.07 1.02 16 14 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 15 C 0.13 1.90 5.34 -4.04 -0.02 1.88 16 16 N -0.72 -8.84 4.69 -60.29 -0.28 -9.12 16 17 C 0.50 6.85 5.02 -10.98 -0.06 6.80 16 18 O -0.53 -9.49 16.33 -14.01 -0.23 -9.72 16 19 C 0.07 0.68 3.73 -26.64 -0.10 0.58 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 21 O -0.35 -4.39 10.61 -54.81 -0.58 -4.98 16 22 C 0.06 0.52 6.72 37.80 0.25 0.77 16 23 C -0.16 -1.04 3.13 -90.06 -0.28 -1.32 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 C 0.07 0.45 6.17 36.08 0.22 0.67 16 26 O -0.37 -3.36 10.47 -35.23 -0.37 -3.73 16 27 C 0.06 0.48 6.82 37.02 0.25 0.73 16 28 C -0.17 -1.50 3.91 -26.82 -0.10 -1.60 16 29 C -0.11 -0.81 3.63 -88.33 -0.32 -1.13 16 30 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 31 C 0.12 2.46 6.03 -3.52 -0.02 2.44 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 40 H 0.07 0.76 7.17 -51.92 -0.37 0.39 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.28 8.13 -51.93 -0.42 -0.14 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 45 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 46 H 0.09 0.78 7.12 -51.93 -0.37 0.41 16 47 H 0.08 1.01 6.22 -51.93 -0.32 0.69 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -33.36 379.21 -9.32 -42.68 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.03 Total: 2.46 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.24 Total: 8.05 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.19 Total: -49.15 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -1.54 Total: -25.78 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.36 -9.32 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035454978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.097 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds