Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48497 * 109.47045 * 240.00125 * 3 2 1 5 5 H 1.48502 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47544 * 119.99920 * 3 2 1 7 7 C 1.38814 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 196.90792 * 7 2 1 9 9 N 1.36939 * 119.99680 * 16.91497 * 7 2 1 10 10 C 1.47155 * 120.98449 * 26.23370 * 9 7 2 11 11 C 1.53287 * 108.38429 * 129.45146 * 10 9 7 12 12 O 1.42962 * 109.22505 * 52.30075 * 11 10 9 13 13 C 1.42963 * 114.16744 * 297.42215 * 12 11 10 14 14 H 1.08994 * 109.51052 * 302.59875 * 13 12 11 15 15 C 1.52999 * 109.51304 * 182.50206 * 13 12 11 16 16 N 1.46501 * 109.47337 * 65.09951 * 15 13 12 17 17 C 1.34777 * 119.99959 * 180.02562 * 16 15 13 18 18 O 1.21273 * 120.00372 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99583 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.89279 * 304.59986 * 19 17 16 21 21 O 1.43549 * 109.89771 * 183.54451 * 19 17 16 22 22 C 1.44100 * 109.79220 * 240.44197 * 21 19 17 23 23 C 1.54234 * 104.35206 * 335.23961 * 22 21 19 24 24 H 1.09002 * 109.92646 * 283.11230 * 23 22 21 25 25 C 1.50857 * 112.40440 * 159.67018 * 23 22 21 26 26 O 1.42678 * 111.77661 * 295.96990 * 25 23 22 27 27 C 1.43228 * 112.61159 * 299.64252 * 26 25 23 28 28 C 1.52727 * 108.32074 * 65.29653 * 27 26 25 29 29 C 1.53103 * 110.57014 * 299.87952 * 28 27 26 30 30 H 1.08996 * 112.39091 * 283.49265 * 29 28 27 31 31 C 1.47165 * 120.93804 * 206.18943 * 9 7 2 32 32 H 0.97001 * 120.00187 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.67745 * 9.72776 * 10 9 7 34 34 H 1.09002 * 109.71189 * 249.19369 * 10 9 7 35 35 H 1.08998 * 109.51624 * 292.37765 * 11 10 9 36 36 H 1.08998 * 109.55569 * 172.24914 * 11 10 9 37 37 H 1.09003 * 109.47076 * 305.10229 * 15 13 12 38 38 H 1.09002 * 109.47408 * 185.10325 * 15 13 12 39 39 H 0.96996 * 119.99701 * 359.97438 * 16 15 13 40 40 H 1.09007 * 110.47954 * 93.98813 * 22 21 19 41 41 H 1.08998 * 110.48171 * 216.48655 * 22 21 19 42 42 H 1.08994 * 109.05882 * 175.33332 * 25 23 22 43 43 H 1.09005 * 108.86759 * 56.47901 * 25 23 22 44 44 H 1.09002 * 109.69437 * 305.58562 * 27 26 25 45 45 H 1.09008 * 109.73000 * 185.02480 * 27 26 25 46 46 H 1.09001 * 109.25443 * 179.60099 * 28 27 26 47 47 H 1.08995 * 109.25649 * 60.16599 * 28 27 26 48 48 H 1.08998 * 109.64809 * 110.80522 * 31 9 7 49 49 H 1.09000 * 109.73005 * 350.24060 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2222 0.2726 9 7 1.3700 -2.3625 -0.3440 10 6 0.1975 -2.3456 -1.2330 11 6 0.4249 -3.3675 -2.3527 12 8 0.7658 -4.6302 -1.7755 13 6 1.9820 -4.6211 -1.0241 14 1 2.8011 -4.2883 -1.6615 15 6 2.2755 -6.0318 -0.5097 16 7 2.5308 -6.9222 -1.6446 17 6 2.8132 -8.2226 -1.4307 18 8 2.8566 -8.6555 -0.2987 19 6 3.0764 -9.1384 -2.5983 20 1 2.2369 -9.1048 -3.2926 21 8 3.2706 -10.4819 -2.1313 22 6 4.5855 -10.9415 -2.5006 23 6 4.9563 -10.0901 -3.7320 24 1 4.4329 -10.4627 -4.6126 25 6 6.4440 -10.0544 -3.9796 26 8 7.1434 -9.4190 -2.9105 27 6 6.7346 -8.0602 -2.7157 28 6 5.2759 -8.0579 -2.2630 29 6 4.3831 -8.7111 -3.3215 30 1 4.1982 -8.0542 -4.1714 31 6 1.8355 -3.6630 0.1637 32 1 -0.4850 0.8400 0.0004 33 1 0.0769 -1.3511 -1.6626 34 1 -0.6959 -2.6124 -0.6684 35 1 1.2383 -3.0293 -2.9947 36 1 -0.4857 -3.4709 -2.9428 37 1 1.4178 -6.3986 0.0542 38 1 3.1522 -6.0075 0.1375 39 1 2.4957 -6.5761 -2.5501 40 1 5.2924 -10.7667 -1.6894 41 1 4.5603 -11.9993 -2.7620 42 1 6.6380 -9.5107 -4.9041 43 1 6.8084 -11.0763 -4.0851 44 1 6.8295 -7.5102 -3.6520 45 1 7.3571 -7.5945 -1.9516 46 1 4.9508 -7.0299 -2.1032 47 1 5.1889 -8.6113 -1.3280 48 1 1.1078 -4.0626 0.8700 49 1 2.7993 -3.5414 0.6582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035454978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = -165.346326 kcal Electronic energy + Delta-G solvation = -31197.334568 eV Core-core repulsion = 26931.369261 eV Total energy + Delta-G solvation = -4265.965308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25766 -40.49057 -39.78885 -38.45338 -36.51596 -35.82762 -34.27864 -33.37348 -32.90811 -32.25234 -30.17857 -29.06979 -27.11952 -26.42810 -25.03981 -24.60086 -24.24212 -23.14607 -21.73574 -20.94407 -20.56089 -18.91750 -18.41759 -18.06434 -17.60666 -17.32631 -17.10598 -16.96954 -16.68824 -16.24988 -16.11883 -15.95541 -15.66016 -15.50743 -15.30732 -15.01373 -14.70559 -14.63110 -14.44172 -14.12076 -13.78941 -13.75623 -13.23097 -13.09358 -13.07315 -12.99553 -12.66883 -12.63411 -12.54049 -12.20053 -12.10397 -12.04797 -11.87994 -11.72463 -11.34388 -11.27542 -11.17722 -10.81050 -10.61219 -10.54106 -10.35468 -10.13664 -8.76834 -7.92112 -5.39742 1.47349 1.48670 1.52962 1.56112 1.94096 2.47336 2.75169 2.82911 2.97653 3.14557 3.23006 3.46043 3.52360 3.60300 3.88854 3.94371 3.98357 4.03531 4.05611 4.19816 4.24383 4.30575 4.36159 4.46917 4.49836 4.51000 4.59034 4.62715 4.66321 4.70029 4.70588 4.75725 4.76806 4.84634 4.89400 4.97590 5.04619 5.10072 5.21919 5.23419 5.34578 5.54653 5.60551 5.77214 6.20508 6.24790 6.32287 6.52161 7.05173 7.20112 7.73186 8.26647 9.13846 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.002471 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.666110 B =11327.589425 C =12063.464745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.390 6.390 13 C 0.083 3.917 14 H 0.076 0.924 15 C 0.142 3.858 16 N -0.705 5.705 17 C 0.504 3.496 18 O -0.580 6.580 19 C 0.064 3.936 20 H 0.132 0.868 21 O -0.382 6.382 22 C 0.049 3.951 23 C -0.143 4.143 24 H 0.127 0.873 25 C 0.067 3.933 26 O -0.398 6.398 27 C 0.062 3.938 28 C -0.163 4.163 29 C -0.098 4.098 30 H 0.145 0.855 31 C 0.115 3.885 32 H 0.252 0.748 33 H 0.068 0.932 34 H -0.004 1.004 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.416 0.584 40 H 0.046 0.954 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.013 0.987 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -18.989 -15.386 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.309 6.309 13 C 0.023 3.977 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.359 5.359 17 C 0.291 3.709 18 O -0.459 6.459 19 C 0.003 3.997 20 H 0.149 0.851 21 O -0.301 6.301 22 C -0.027 4.027 23 C -0.161 4.161 24 H 0.145 0.855 25 C -0.010 4.010 26 O -0.317 6.317 27 C -0.015 4.015 28 C -0.201 4.201 29 C -0.116 4.116 30 H 0.163 0.837 31 C -0.011 4.011 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.253 0.747 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.031 0.969 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.793 -19.543 -14.342 26.957 hybrid contribution -0.276 1.775 0.432 1.847 sum 11.517 -17.768 -13.910 25.334 Atomic orbital electron populations 1.70189 1.06782 1.26174 1.55092 1.25843 0.96079 1.01682 1.00953 0.85273 0.77487 0.78775 0.78487 1.19845 1.22132 1.20277 1.19527 0.93058 0.85511 1.41652 0.90882 1.44349 1.33653 1.01837 1.53845 1.21327 0.87814 0.98545 0.90689 1.23154 1.00882 0.83478 0.94737 1.87809 1.41855 1.32048 1.69170 1.22606 0.87572 0.93786 0.93689 0.90654 1.21141 1.01113 0.87032 0.89006 1.45768 1.70997 1.08307 1.10831 1.21399 0.75377 0.82848 0.91257 1.90698 1.52789 1.76252 1.26159 1.23153 1.01649 0.82653 0.92225 0.85108 1.88640 1.34246 1.26680 1.80502 1.23548 0.83139 0.99956 0.96026 1.22886 0.99035 0.94212 0.99997 0.85541 1.22038 0.88893 0.99969 0.90096 1.88121 1.62527 1.26246 1.54843 1.22623 0.93396 0.83382 1.02084 1.22348 0.97368 1.02025 0.98331 1.22962 0.91592 0.98305 0.98749 0.83713 1.21610 0.98644 0.86422 0.94433 0.93921 0.91359 0.98610 0.92688 0.87324 0.92612 0.89703 0.74695 0.93593 0.87365 0.90301 0.87206 0.90271 0.88849 0.89845 0.93684 0.96900 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.46 11.14 21.65 0.24 -54.22 16 2 C -0.05 -2.72 4.95 84.86 0.42 -2.31 16 3 Si 0.97 43.42 29.59 68.60 2.03 45.45 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.27 -14.30 9.65 84.03 0.81 -13.49 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -30.13 3.05 -697.50 -2.13 -32.26 16 10 C 0.14 6.68 5.45 86.35 0.47 7.15 16 11 C 0.06 1.93 6.98 72.08 0.50 2.43 16 12 O -0.39 -13.20 10.33 -148.98 -1.54 -14.74 16 13 C 0.08 2.63 2.81 30.70 0.09 2.71 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.14 4.01 5.34 86.38 0.46 4.48 16 16 N -0.71 -16.14 4.69 -463.05 -2.17 -18.31 16 17 C 0.50 13.35 5.02 87.66 0.44 13.79 16 18 O -0.58 -21.56 16.33 15.71 0.26 -21.30 16 19 C 0.06 1.21 3.73 30.65 0.11 1.33 16 20 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 21 O -0.38 -9.33 10.61 -130.26 -1.38 -10.71 16 22 C 0.05 0.85 6.72 72.40 0.49 1.33 16 23 C -0.14 -1.44 3.13 -10.43 -0.03 -1.47 16 24 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 25 C 0.07 0.61 6.17 71.29 0.44 1.05 16 26 O -0.40 -6.50 10.47 -148.98 -1.56 -8.06 16 27 C 0.06 0.86 6.82 71.89 0.49 1.35 16 28 C -0.16 -2.72 3.91 30.54 0.12 -2.60 16 29 C -0.10 -1.17 3.63 -9.31 -0.03 -1.21 16 30 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 31 C 0.12 4.68 6.03 86.35 0.52 5.20 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.07 3.56 6.14 -2.39 -0.01 3.54 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.42 7.14 8.47 -92.71 -0.79 6.35 16 40 H 0.05 1.01 7.17 -2.38 -0.02 0.99 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 0.42 8.13 -2.39 -0.02 0.40 16 43 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.08 0.75 8.11 -2.39 -0.02 0.73 16 45 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.08 1.38 7.12 -2.39 -0.02 1.36 16 47 H 0.04 1.12 6.22 -2.39 -0.01 1.10 16 48 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 Total: -1.00 -75.94 379.21 -0.79 -76.73 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.17 Total: 17.67 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 5.30 Total: 19.75 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.06 Total: -104.78 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -4.23 Total: -54.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.94 -0.79 -76.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035454978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.617 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds