Wall clock time and date at job start Sat Apr 11 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48499 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47055 * 299.99848 * 3 2 1 6 6 H 1.48497 * 109.47010 * 59.99864 * 3 2 1 7 7 C 1.38817 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99923 * 196.93036 * 7 2 1 9 9 N 1.36932 * 119.99790 * 16.93219 * 7 2 1 10 10 C 1.47152 * 120.98298 * 206.22691 * 9 7 2 11 11 C 1.53292 * 108.38702 * 230.51653 * 10 9 7 12 12 O 1.42957 * 109.22114 * 307.69405 * 11 10 9 13 13 C 1.42960 * 114.16777 * 62.58519 * 12 11 10 14 14 H 1.08994 * 109.51356 * 57.34019 * 13 12 11 15 15 C 1.53004 * 109.51426 * 177.44513 * 13 12 11 16 16 N 1.46500 * 109.46659 * 299.89615 * 15 13 12 17 17 C 1.34780 * 119.99710 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00155 * 179.97438 * 17 16 15 20 20 H 1.09006 * 109.85865 * 304.02953 * 19 17 16 21 21 O 1.43350 * 109.87008 * 182.90952 * 19 17 16 22 22 C 1.43974 * 109.98031 * 240.53338 * 21 19 17 23 23 C 1.53995 * 104.53244 * 336.37466 * 22 21 19 24 24 H 1.09002 * 109.50428 * 281.36501 * 23 22 21 25 25 C 1.50956 * 112.60833 * 159.02755 * 23 22 21 26 26 O 1.42677 * 111.78992 * 293.72081 * 25 23 22 27 27 C 1.43257 * 112.52800 * 299.93009 * 26 25 23 28 28 C 1.52723 * 108.25992 * 65.60579 * 27 26 25 29 29 C 1.53126 * 110.61250 * 299.79693 * 28 27 26 30 30 H 1.08996 * 112.28003 * 283.03609 * 29 28 27 31 31 C 1.47156 * 120.98602 * 26.20671 * 9 7 2 32 32 H 0.97002 * 119.99840 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.68519 * 110.78662 * 10 9 7 34 34 H 1.09004 * 109.71059 * 350.25882 * 10 9 7 35 35 H 1.09008 * 109.51244 * 187.77493 * 11 10 9 36 36 H 1.08991 * 109.55705 * 67.64732 * 11 10 9 37 37 H 1.08996 * 109.47044 * 59.89594 * 15 13 12 38 38 H 1.09001 * 109.46702 * 179.89858 * 15 13 12 39 39 H 0.96997 * 120.00253 * 359.97438 * 16 15 13 40 40 H 1.09005 * 110.42791 * 217.60687 * 22 21 19 41 41 H 1.08998 * 110.53035 * 95.18522 * 22 21 19 42 42 H 1.09002 * 109.01874 * 173.12197 * 25 23 22 43 43 H 1.09003 * 108.95701 * 54.27207 * 25 23 22 44 44 H 1.08995 * 109.70984 * 305.91144 * 27 26 25 45 45 H 1.09002 * 109.70837 * 185.29235 * 27 26 25 46 46 H 1.09005 * 109.24647 * 179.51308 * 28 27 26 47 47 H 1.08991 * 109.22260 * 60.07273 * 28 27 26 48 48 H 1.08997 * 109.67493 * 9.76237 * 31 9 7 49 49 H 1.09001 * 109.67969 * 249.20990 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2224 0.2729 9 7 1.3700 -2.3625 -0.3443 10 6 1.8340 -3.6634 0.1633 11 6 1.9813 -4.6213 -1.0244 12 8 0.7650 -4.6302 -1.7755 13 6 0.4244 -3.3675 -2.3529 14 1 1.2378 -3.0295 -2.9949 15 6 -0.8540 -3.5123 -3.1809 16 7 -0.6359 -4.4917 -4.2484 17 6 -1.6313 -4.7832 -5.1091 18 8 -2.7073 -4.2344 -5.0002 19 6 -1.4069 -5.7902 -6.2076 20 1 -0.5492 -5.4943 -6.8116 21 8 -2.5771 -5.8825 -7.0304 22 6 -3.0987 -7.2240 -6.9953 23 6 -1.8913 -8.0980 -6.6083 24 1 -1.2597 -8.2541 -7.4829 25 6 -2.3013 -9.4316 -6.0321 26 8 -2.9651 -9.2851 -4.7777 27 6 -2.1425 -8.6490 -3.7924 28 6 -1.8806 -7.2132 -4.2423 29 6 -1.1602 -7.1946 -5.5934 30 1 -0.1002 -7.4305 -5.4999 31 6 0.1974 -2.3454 -1.2332 32 1 -0.4850 0.8401 -0.0004 33 1 1.1059 -4.0630 0.8692 34 1 2.7973 -3.5423 0.6590 35 1 2.1902 -5.6264 -0.6578 36 1 2.8005 -4.2888 -1.6618 37 1 -1.6668 -3.8503 -2.5382 38 1 -1.1140 -2.5488 -3.6193 39 1 0.2250 -4.9298 -4.3362 40 1 -3.4770 -7.5109 -7.9765 41 1 -3.8854 -7.3088 -6.2457 42 1 -1.4124 -10.0472 -5.8938 43 1 -2.9719 -9.9291 -6.7328 44 1 -1.1973 -9.1840 -3.7017 45 1 -2.6568 -8.6449 -2.8313 46 1 -1.2621 -6.7108 -3.4984 47 1 -2.8306 -6.6870 -4.3343 48 1 0.0770 -1.3509 -1.6628 49 1 -0.6956 -2.6122 -0.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035454981.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:51 Heat of formation + Delta-G solvation = -141.039314 kcal Electronic energy + Delta-G solvation = -31535.160951 eV Core-core repulsion = 27270.249674 eV Total energy + Delta-G solvation = -4264.911277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42361 -39.24692 -38.45438 -37.60431 -34.85852 -34.37710 -33.44399 -32.24717 -31.39249 -30.94519 -29.16378 -27.35676 -25.84108 -25.54239 -23.83850 -23.44580 -23.16479 -21.64219 -20.33059 -19.88493 -19.54098 -17.50268 -17.32787 -16.90189 -16.66642 -16.18432 -15.98110 -15.71615 -15.49511 -15.28474 -14.93771 -14.43628 -14.37239 -14.24920 -13.96150 -13.86408 -13.33858 -13.30600 -13.04411 -12.98142 -12.88222 -12.53998 -12.35495 -12.07170 -11.90636 -11.57436 -11.27067 -11.15000 -10.98147 -10.89921 -10.76563 -10.59421 -10.47075 -10.35213 -10.28820 -10.07136 -9.85999 -9.71801 -9.37323 -9.10141 -8.86767 -8.59779 -6.81021 -5.89008 -3.32958 2.65589 3.02095 3.31267 3.39157 3.41072 3.57214 3.64610 3.84741 4.16911 4.25627 4.39379 4.41629 4.58379 4.65937 4.82597 4.89465 4.96532 5.01600 5.14437 5.17801 5.20494 5.25336 5.31164 5.32815 5.46916 5.48896 5.53059 5.57476 5.66287 5.79808 5.80381 5.87105 5.98064 6.00266 6.06551 6.19278 6.31725 6.44555 6.56278 6.65802 6.72493 6.79763 7.01445 7.42974 7.61782 7.66699 7.77222 8.28101 8.33443 9.06028 9.69035 10.25657 11.19045 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002677 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.764227 B =10458.377199 C =11247.535578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.051 3.949 12 O -0.390 6.390 13 C 0.056 3.944 14 H 0.056 0.944 15 C 0.133 3.867 16 N -0.719 5.719 17 C 0.503 3.497 18 O -0.526 6.526 19 C 0.066 3.934 20 H 0.103 0.897 21 O -0.350 6.350 22 C 0.058 3.942 23 C -0.155 4.155 24 H 0.095 0.905 25 C 0.073 3.927 26 O -0.375 6.375 27 C 0.062 3.938 28 C -0.167 4.167 29 C -0.104 4.104 30 H 0.108 0.892 31 C 0.152 3.848 32 H 0.256 0.744 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.400 0.600 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -19.445 -13.123 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.027 4.027 12 O -0.310 6.310 13 C -0.003 4.003 14 H 0.074 0.926 15 C 0.010 3.990 16 N -0.373 5.373 17 C 0.288 3.712 18 O -0.401 6.401 19 C 0.005 3.995 20 H 0.121 0.879 21 O -0.268 6.268 22 C -0.019 4.019 23 C -0.174 4.174 24 H 0.113 0.887 25 C -0.005 4.005 26 O -0.293 6.293 27 C -0.015 4.015 28 C -0.205 4.205 29 C -0.123 4.123 30 H 0.126 0.874 31 C 0.026 3.974 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.235 0.765 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.265 -18.917 -13.121 23.057 hybrid contribution 1.457 0.973 0.142 1.757 sum 0.192 -17.944 -12.978 22.146 Atomic orbital electron populations 1.70023 1.05254 1.25728 1.53451 1.25069 0.95362 0.98542 1.00632 0.86196 0.79268 0.83711 0.77429 1.20236 1.21399 1.21581 1.19218 0.92659 0.84446 1.42332 0.91304 1.44056 1.33733 1.01380 1.52651 1.21595 0.98615 0.87580 0.93953 1.22996 0.86154 0.99569 0.94020 1.87752 1.42173 1.31614 1.69454 1.23143 0.94980 0.86425 0.95793 0.92635 1.21414 0.97659 0.92401 0.87543 1.45981 1.15494 1.44482 1.31302 1.20695 0.84649 0.83101 0.82753 1.90732 1.24961 1.51939 1.72463 1.22917 0.90266 0.94565 0.91803 0.87915 1.88590 1.42693 1.29533 1.65976 1.23334 0.95671 0.80745 1.02103 1.22721 0.98330 0.97018 0.99332 0.88667 1.21834 0.98061 0.94216 0.86353 1.88151 1.40633 1.79970 1.20583 1.22599 0.95272 0.91517 0.92090 1.22448 1.02576 0.98878 0.96576 1.22678 1.01123 0.92719 0.95733 0.87431 1.21306 0.89462 0.97636 0.89010 0.93402 0.95579 0.92004 0.90059 0.93889 0.90760 0.90011 0.76548 0.89228 0.91059 0.92656 0.88547 0.92625 0.88322 0.88965 0.89976 0.88589 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.14 55.49 0.62 -25.00 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.47 3.05 -171.82 -0.52 -14.99 16 10 C 0.11 2.18 6.73 -3.54 -0.02 2.16 16 11 C 0.05 0.83 6.98 37.31 0.26 1.09 16 12 O -0.39 -6.70 10.13 -35.23 -0.36 -7.06 16 13 C 0.06 1.01 2.86 -26.57 -0.08 0.93 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 2.20 5.37 -4.04 -0.02 2.17 16 16 N -0.72 -9.67 4.46 -60.29 -0.27 -9.94 16 17 C 0.50 7.39 5.00 -10.98 -0.05 7.33 16 18 O -0.53 -10.19 16.34 -14.07 -0.23 -10.42 16 19 C 0.07 0.74 3.74 -26.69 -0.10 0.64 16 20 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 21 O -0.35 -4.66 10.58 -54.86 -0.58 -5.24 16 22 C 0.06 0.57 6.78 37.68 0.26 0.83 16 23 C -0.16 -1.16 3.02 -90.45 -0.27 -1.43 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 C 0.07 0.51 6.17 36.13 0.22 0.73 16 26 O -0.37 -3.73 10.58 -35.23 -0.37 -4.11 16 27 C 0.06 0.56 6.82 37.02 0.25 0.82 16 28 C -0.17 -1.75 3.94 -26.81 -0.11 -1.86 16 29 C -0.10 -0.89 3.61 -88.68 -0.32 -1.21 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 31 C 0.15 3.51 4.74 -3.53 -0.02 3.49 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 35 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.40 4.44 8.35 -40.82 -0.34 4.10 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.82 7.49 -51.93 -0.39 0.43 16 42 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.04 7.03 -51.93 -0.37 0.67 16 47 H 0.08 1.12 6.38 -51.93 -0.33 0.79 16 48 H 0.10 2.45 6.14 -51.93 -0.32 2.14 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -33.16 379.20 -9.31 -42.47 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.05 Total: 3.72 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.23 Total: 8.69 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.17 Total: -49.93 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.54 Total: -26.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.16 -9.31 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035454981.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.574 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds