Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48499 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47055 * 299.99848 * 3 2 1 6 6 H 1.48497 * 109.47010 * 59.99864 * 3 2 1 7 7 C 1.38817 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99923 * 196.93036 * 7 2 1 9 9 N 1.36932 * 119.99790 * 16.93219 * 7 2 1 10 10 C 1.47152 * 120.98298 * 206.22691 * 9 7 2 11 11 C 1.53292 * 108.38702 * 230.51653 * 10 9 7 12 12 O 1.42957 * 109.22114 * 307.69405 * 11 10 9 13 13 C 1.42960 * 114.16777 * 62.58519 * 12 11 10 14 14 H 1.08994 * 109.51356 * 57.34019 * 13 12 11 15 15 C 1.53004 * 109.51426 * 177.44513 * 13 12 11 16 16 N 1.46500 * 109.46659 * 299.89615 * 15 13 12 17 17 C 1.34780 * 119.99710 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00155 * 179.97438 * 17 16 15 20 20 H 1.09006 * 109.85865 * 304.02953 * 19 17 16 21 21 O 1.43350 * 109.87008 * 182.90952 * 19 17 16 22 22 C 1.43974 * 109.98031 * 240.53338 * 21 19 17 23 23 C 1.53995 * 104.53244 * 336.37466 * 22 21 19 24 24 H 1.09002 * 109.50428 * 281.36501 * 23 22 21 25 25 C 1.50956 * 112.60833 * 159.02755 * 23 22 21 26 26 O 1.42677 * 111.78992 * 293.72081 * 25 23 22 27 27 C 1.43257 * 112.52800 * 299.93009 * 26 25 23 28 28 C 1.52723 * 108.25992 * 65.60579 * 27 26 25 29 29 C 1.53126 * 110.61250 * 299.79693 * 28 27 26 30 30 H 1.08996 * 112.28003 * 283.03609 * 29 28 27 31 31 C 1.47156 * 120.98602 * 26.20671 * 9 7 2 32 32 H 0.97002 * 119.99840 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.68519 * 110.78662 * 10 9 7 34 34 H 1.09004 * 109.71059 * 350.25882 * 10 9 7 35 35 H 1.09008 * 109.51244 * 187.77493 * 11 10 9 36 36 H 1.08991 * 109.55705 * 67.64732 * 11 10 9 37 37 H 1.08996 * 109.47044 * 59.89594 * 15 13 12 38 38 H 1.09001 * 109.46702 * 179.89858 * 15 13 12 39 39 H 0.96997 * 120.00253 * 359.97438 * 16 15 13 40 40 H 1.09005 * 110.42791 * 217.60687 * 22 21 19 41 41 H 1.08998 * 110.53035 * 95.18522 * 22 21 19 42 42 H 1.09002 * 109.01874 * 173.12197 * 25 23 22 43 43 H 1.09003 * 108.95701 * 54.27207 * 25 23 22 44 44 H 1.08995 * 109.70984 * 305.91144 * 27 26 25 45 45 H 1.09002 * 109.70837 * 185.29235 * 27 26 25 46 46 H 1.09005 * 109.24647 * 179.51308 * 28 27 26 47 47 H 1.08991 * 109.22260 * 60.07273 * 28 27 26 48 48 H 1.08997 * 109.67493 * 9.76237 * 31 9 7 49 49 H 1.09001 * 109.67969 * 249.20990 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2224 0.2729 9 7 1.3700 -2.3625 -0.3443 10 6 1.8340 -3.6634 0.1633 11 6 1.9813 -4.6213 -1.0244 12 8 0.7650 -4.6302 -1.7755 13 6 0.4244 -3.3675 -2.3529 14 1 1.2378 -3.0295 -2.9949 15 6 -0.8540 -3.5123 -3.1809 16 7 -0.6359 -4.4917 -4.2484 17 6 -1.6313 -4.7832 -5.1091 18 8 -2.7073 -4.2344 -5.0002 19 6 -1.4069 -5.7902 -6.2076 20 1 -0.5492 -5.4943 -6.8116 21 8 -2.5771 -5.8825 -7.0304 22 6 -3.0987 -7.2240 -6.9953 23 6 -1.8913 -8.0980 -6.6083 24 1 -1.2597 -8.2541 -7.4829 25 6 -2.3013 -9.4316 -6.0321 26 8 -2.9651 -9.2851 -4.7777 27 6 -2.1425 -8.6490 -3.7924 28 6 -1.8806 -7.2132 -4.2423 29 6 -1.1602 -7.1946 -5.5934 30 1 -0.1002 -7.4305 -5.4999 31 6 0.1974 -2.3454 -1.2332 32 1 -0.4850 0.8401 -0.0004 33 1 1.1059 -4.0630 0.8692 34 1 2.7973 -3.5423 0.6590 35 1 2.1902 -5.6264 -0.6578 36 1 2.8005 -4.2888 -1.6618 37 1 -1.6668 -3.8503 -2.5382 38 1 -1.1140 -2.5488 -3.6193 39 1 0.2250 -4.9298 -4.3362 40 1 -3.4770 -7.5109 -7.9765 41 1 -3.8854 -7.3088 -6.2457 42 1 -1.4124 -10.0472 -5.8938 43 1 -2.9719 -9.9291 -6.7328 44 1 -1.1973 -9.1840 -3.7017 45 1 -2.6568 -8.6449 -2.8313 46 1 -1.2621 -6.7108 -3.4984 47 1 -2.8306 -6.6870 -4.3343 48 1 0.0770 -1.3509 -1.6628 49 1 -0.6956 -2.6122 -0.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035454981.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = -165.685256 kcal Electronic energy + Delta-G solvation = -31536.229679 eV Core-core repulsion = 27270.249674 eV Total energy + Delta-G solvation = -4265.980005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27036 -40.48296 -39.78128 -38.47601 -36.47505 -35.88497 -34.30363 -33.26828 -32.99418 -32.33555 -30.12995 -28.98316 -27.19482 -26.43275 -25.11938 -24.59844 -24.22620 -23.10313 -21.68585 -20.99403 -20.56262 -18.95242 -18.44295 -18.01504 -17.63312 -17.31611 -17.13402 -16.91636 -16.75737 -16.21079 -16.09925 -15.95442 -15.55132 -15.46871 -15.43112 -15.04164 -14.70585 -14.58979 -14.45468 -14.15063 -13.80867 -13.77119 -13.21171 -13.07605 -13.04558 -13.01836 -12.71411 -12.64183 -12.51508 -12.19449 -12.07620 -12.04038 -11.88820 -11.72818 -11.31262 -11.28469 -11.16073 -10.83762 -10.59449 -10.55760 -10.35761 -10.14433 -8.77141 -7.92966 -5.40456 1.44367 1.46549 1.53132 1.56899 1.92165 2.46139 2.76753 2.81891 2.98818 3.16228 3.22070 3.46464 3.53741 3.60563 3.88788 3.94775 4.03660 4.05639 4.05864 4.20104 4.26578 4.30448 4.36325 4.45698 4.51123 4.51429 4.59172 4.61480 4.66985 4.68253 4.70201 4.78214 4.82134 4.85363 4.97171 4.97827 5.07147 5.12211 5.21914 5.22840 5.33359 5.51593 5.58945 5.78670 6.20800 6.25227 6.31580 6.53107 7.03759 7.20847 7.73248 8.26332 9.12807 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002677 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.764227 B =10458.377199 C =11247.535578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.058 3.942 12 O -0.385 6.385 13 C 0.081 3.919 14 H 0.067 0.933 15 C 0.145 3.855 16 N -0.702 5.702 17 C 0.501 3.499 18 O -0.583 6.583 19 C 0.066 3.934 20 H 0.137 0.863 21 O -0.382 6.382 22 C 0.049 3.951 23 C -0.143 4.143 24 H 0.128 0.872 25 C 0.066 3.934 26 O -0.400 6.400 27 C 0.064 3.936 28 C -0.163 4.163 29 C -0.095 4.095 30 H 0.148 0.852 31 C 0.159 3.841 32 H 0.251 0.749 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.064 0.936 49 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 -22.172 -14.898 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.393 4.393 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.019 4.019 12 O -0.305 6.305 13 C 0.021 3.979 14 H 0.085 0.915 15 C 0.020 3.980 16 N -0.356 5.356 17 C 0.288 3.712 18 O -0.462 6.462 19 C 0.005 3.995 20 H 0.154 0.846 21 O -0.300 6.300 22 C -0.026 4.026 23 C -0.161 4.161 24 H 0.146 0.854 25 C -0.010 4.010 26 O -0.319 6.319 27 C -0.013 4.013 28 C -0.201 4.201 29 C -0.113 4.113 30 H 0.165 0.835 31 C 0.032 3.968 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.128 0.872 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 1.968 -21.704 -14.903 26.402 hybrid contribution 0.422 1.776 0.774 1.983 sum 2.390 -19.928 -14.129 24.546 Atomic orbital electron populations 1.70193 1.06808 1.25974 1.55269 1.25858 0.96056 1.01751 1.01136 0.85176 0.78774 0.79596 0.76717 1.18591 1.21705 1.22132 1.19590 0.93075 0.85497 1.41152 0.90677 1.44365 1.33645 1.02500 1.53384 1.21850 0.98482 0.86461 0.95694 1.23079 0.85839 1.00693 0.92302 1.87776 1.43010 1.30323 1.69350 1.22683 0.95679 0.85517 0.94010 0.91494 1.21038 0.96331 0.92644 0.88006 1.45732 1.16214 1.43560 1.30072 1.21531 0.83609 0.82919 0.83106 1.90705 1.27291 1.54207 1.74016 1.23121 0.90611 0.94931 0.90817 0.84621 1.88563 1.43737 1.31667 1.66042 1.23489 0.96347 0.80292 1.02506 1.22736 0.97061 0.96311 1.00017 0.85391 1.22094 0.99355 0.94270 0.85321 1.88130 1.41903 1.79919 1.21906 1.22594 0.96222 0.90747 0.91711 1.22344 1.00468 0.99320 0.97923 1.22823 1.03129 0.91093 0.94262 0.83473 1.21078 0.88212 0.97558 0.89962 0.94033 0.96829 0.90965 0.85834 0.92583 0.92786 0.91315 0.74553 0.87129 0.93989 0.90113 0.87151 0.89993 0.89270 0.89976 0.94321 0.91739 0.98503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 11.14 21.65 0.24 -55.23 16 2 C -0.05 -2.90 4.95 84.86 0.42 -2.48 16 3 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.26 -14.09 9.65 84.04 0.81 -13.28 16 8 H 0.08 3.85 7.88 -2.91 -0.02 3.82 16 9 N -0.61 -30.14 3.05 -697.52 -2.13 -32.27 16 10 C 0.10 3.90 6.73 86.35 0.58 4.48 16 11 C 0.06 1.71 6.98 72.08 0.50 2.21 16 12 O -0.39 -12.42 10.13 -148.98 -1.51 -13.93 16 13 C 0.08 2.89 2.86 30.70 0.09 2.98 16 14 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 4.92 5.37 86.38 0.46 5.38 16 16 N -0.70 -18.38 4.46 -463.06 -2.07 -20.45 16 17 C 0.50 14.78 5.00 87.66 0.44 15.21 16 18 O -0.58 -23.91 16.34 15.74 0.26 -23.65 16 19 C 0.07 1.36 3.74 30.62 0.11 1.48 16 20 H 0.14 1.93 8.14 -2.38 -0.02 1.91 16 21 O -0.38 -9.92 10.58 -130.21 -1.38 -11.30 16 22 C 0.05 0.93 6.78 72.32 0.49 1.42 16 23 C -0.14 -1.62 3.02 -10.69 -0.03 -1.66 16 24 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 25 C 0.07 0.70 6.17 71.32 0.44 1.14 16 26 O -0.40 -7.35 10.58 -148.98 -1.58 -8.93 16 27 C 0.06 1.07 6.82 71.89 0.49 1.56 16 28 C -0.16 -3.27 3.94 30.54 0.12 -3.15 16 29 C -0.09 -1.31 3.61 -9.54 -0.03 -1.35 16 30 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 31 C 0.16 7.58 4.74 86.35 0.41 7.99 16 32 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.07 2.62 7.96 -2.38 -0.02 2.60 16 35 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.42 8.11 8.35 -92.71 -0.77 7.34 16 40 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.04 1.01 7.49 -2.39 -0.02 0.99 16 42 H 0.08 0.50 8.13 -2.39 -0.02 0.48 16 43 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.77 7.03 -2.38 -0.02 1.76 16 47 H 0.04 1.12 6.38 -2.39 -0.02 1.10 16 48 H 0.06 3.48 6.14 -2.39 -0.01 3.47 16 49 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -77.79 379.20 -0.65 -78.44 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.18 Total: 19.18 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.30 Total: 21.94 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -3.95 Total: -107.95 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -4.21 Total: -57.81 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.79 -0.65 -78.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035454981.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.242 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds