Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99946 * 2 1 4 4 H 1.48506 * 109.46911 * 90.00096 * 3 2 1 5 5 H 1.48504 * 109.47325 * 209.99564 * 3 2 1 6 6 H 1.48498 * 109.47550 * 329.99916 * 3 2 1 7 7 C 1.38812 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00124 * 23.03677 * 7 2 1 9 9 N 1.36932 * 120.00174 * 203.03262 * 7 2 1 10 10 C 1.47176 * 136.00176 * 9.44815 * 9 7 2 11 11 C 1.52636 * 87.94773 * 206.72438 * 10 9 7 12 12 C 1.47161 * 135.99916 * 189.81274 * 9 7 2 13 13 C 1.52792 * 114.14551 * 220.83486 * 11 10 9 14 14 N 1.47356 * 108.04485 * 178.99409 * 13 11 10 15 15 C 1.34777 * 121.05713 * 228.23048 * 14 13 11 16 16 O 1.21280 * 120.00571 * 359.97438 * 15 14 13 17 17 C 1.50710 * 119.99627 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.46866 * 180.02562 * 17 15 14 19 19 C 1.42897 * 113.99797 * 179.97438 * 18 17 15 20 20 C 1.53173 * 109.54496 * 269.55198 * 19 18 17 21 21 C 1.53090 * 109.16308 * 183.15286 * 20 19 18 22 22 O 1.42897 * 109.41842 * 57.61036 * 21 20 19 23 23 C 1.42904 * 114.09496 * 298.84388 * 22 21 20 24 24 C 1.53094 * 109.41776 * 61.15610 * 23 22 21 25 25 C 1.47131 * 117.87990 * 48.24596 * 14 13 11 26 26 C 1.53223 * 108.72910 * 307.70847 * 25 14 13 27 27 O 1.42357 * 114.14627 * 88.43617 * 11 10 9 28 28 H 0.96997 * 119.99623 * 174.66515 * 1 2 3 29 29 H 1.09002 * 113.48842 * 321.42775 * 10 9 7 30 30 H 1.09002 * 113.48977 * 91.93113 * 10 9 7 31 31 H 1.09002 * 113.49270 * 268.06803 * 12 9 7 32 32 H 1.08998 * 113.49392 * 38.52261 * 12 9 7 33 33 H 1.09001 * 109.74610 * 298.62832 * 13 11 10 34 34 H 1.09002 * 109.74700 * 59.30724 * 13 11 10 35 35 H 1.09001 * 109.46730 * 299.99571 * 17 15 14 36 36 H 1.08994 * 109.47107 * 59.99462 * 17 15 14 37 37 H 1.09001 * 109.54268 * 29.82261 * 19 18 17 38 38 H 1.09001 * 109.52374 * 303.06028 * 20 19 18 39 39 H 1.08998 * 109.52243 * 63.24804 * 20 19 18 40 40 H 1.08995 * 109.48051 * 297.62167 * 21 20 19 41 41 H 1.09005 * 109.47563 * 177.59376 * 21 20 19 42 42 H 1.09000 * 109.47771 * 301.16706 * 23 22 21 43 43 H 1.09001 * 109.48988 * 181.14751 * 23 22 21 44 44 H 1.08999 * 109.51750 * 182.48912 * 24 23 22 45 45 H 1.08991 * 109.52108 * 62.29686 * 24 23 22 46 46 H 1.09004 * 109.58915 * 67.48202 * 25 14 13 47 47 H 1.08997 * 109.59426 * 187.93310 * 25 14 13 48 48 H 1.08997 * 109.49358 * 174.15890 * 26 25 14 49 49 H 1.09003 * 109.49228 * 294.22945 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5349 -2.1004 -0.3651 9 7 3.2977 -1.2492 0.4645 10 6 4.2015 -0.3299 1.1746 11 6 5.3710 -1.0703 0.5313 12 6 4.3868 -2.2389 0.4662 13 6 6.5537 -1.3058 1.4696 14 7 7.5874 -2.0455 0.7242 15 6 8.1758 -3.1382 1.2499 16 8 7.8569 -3.5269 2.3536 17 6 9.2300 -3.8769 0.4663 18 8 9.6978 -4.9908 1.2296 19 6 10.7051 -5.7631 0.5734 20 6 10.0451 -6.8795 -0.2416 21 6 11.1335 -7.7487 -0.8769 22 8 11.9794 -8.2750 0.1475 23 6 12.6600 -7.2776 0.9117 24 6 11.6329 -6.3895 1.6190 25 6 7.9571 -1.5530 -0.6121 26 6 6.6822 -1.3895 -1.4462 27 8 5.7565 -0.5577 -0.7396 28 1 -0.4849 -0.8364 -0.0781 29 1 4.1122 0.7061 0.8475 30 1 4.1642 -0.4351 2.2589 31 1 4.4005 -2.8684 1.3560 32 1 4.4534 -2.8133 -0.4577 33 1 6.9546 -0.3489 1.8040 34 1 6.2300 -1.8906 2.3306 35 1 8.8029 -4.2331 -0.4712 36 1 10.0623 -3.2058 0.2545 37 1 11.2841 -5.1197 -0.0891 38 1 9.4262 -7.4921 0.4140 39 1 9.4256 -6.4417 -1.0243 40 1 11.7266 -7.1445 -1.5634 41 1 10.6698 -8.5702 -1.4232 42 1 13.2732 -6.6673 0.2487 43 1 13.2963 -7.7595 1.6540 44 1 12.1491 -5.6011 2.1668 45 1 11.0462 -6.9921 2.3122 46 1 8.4600 -0.5903 -0.5205 47 1 8.6206 -2.2701 -1.0953 48 1 6.9297 -0.9279 -2.4021 49 1 6.2332 -2.3675 -1.6197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053454141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = -85.455850 kcal Electronic energy + Delta-G solvation = -30804.895236 eV Core-core repulsion = 26542.394239 eV Total energy + Delta-G solvation = -4262.500997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79167 -40.06852 -39.11199 -37.55670 -36.64073 -34.71100 -32.99872 -32.47957 -31.63119 -30.61015 -29.10583 -27.70626 -25.74244 -25.55987 -24.57227 -24.05136 -23.50115 -21.53886 -20.91945 -19.65378 -19.05075 -17.91405 -17.51468 -17.11348 -16.71975 -16.61079 -16.33304 -16.25199 -15.63221 -15.48453 -15.21548 -14.85606 -14.78339 -14.42620 -14.16272 -13.96723 -13.81631 -13.53604 -13.39161 -13.17868 -12.93382 -12.83757 -12.66329 -12.24799 -11.88820 -11.76320 -11.65891 -11.38940 -11.37248 -11.23012 -10.88448 -10.81506 -10.70250 -10.44669 -10.19953 -10.00713 -9.84684 -9.77453 -9.40351 -9.06172 -8.57495 -8.55407 -7.17335 -6.32664 -3.18686 2.36282 2.43607 3.30022 3.43759 3.44443 3.57557 3.73302 3.76401 4.14229 4.22536 4.36291 4.45396 4.53919 4.55685 4.61349 4.63431 4.69175 4.73100 4.74383 4.80931 4.82570 4.88652 4.96792 5.02271 5.11955 5.12900 5.18929 5.32943 5.37143 5.51204 5.52645 5.56053 5.65942 5.66302 5.73288 5.81201 6.03694 6.15517 6.18296 6.21245 6.32658 6.48066 6.67439 6.69113 7.11316 7.16313 7.48514 7.99122 8.26361 8.97769 9.53169 10.38645 11.17761 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.002282 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.169317 B =12265.191325 C =12439.510027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.274 1.274 6 H -0.296 1.296 7 C -0.310 4.310 8 H 0.078 0.922 9 N -0.614 5.614 10 C 0.121 3.879 11 C 0.056 3.944 12 C 0.105 3.895 13 C 0.104 3.896 14 N -0.612 5.612 15 C 0.517 3.483 16 O -0.515 6.515 17 C 0.046 3.954 18 O -0.352 6.352 19 C 0.088 3.912 20 C -0.181 4.181 21 C 0.064 3.936 22 O -0.382 6.382 23 C 0.065 3.935 24 C -0.154 4.154 25 C 0.072 3.928 26 C 0.044 3.956 27 O -0.333 6.333 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.169 -9.755 -3.248 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.219 4.219 3 Si 0.888 3.112 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.224 1.224 7 C -0.436 4.436 8 H 0.096 0.904 9 N -0.342 5.342 10 C -0.005 4.005 11 C 0.014 3.986 12 C -0.022 4.022 13 C -0.019 4.019 14 N -0.348 5.348 15 C 0.304 3.696 16 O -0.390 6.390 17 C -0.034 4.034 18 O -0.270 6.270 19 C 0.030 3.970 20 C -0.219 4.219 21 C -0.013 4.013 22 O -0.300 6.300 23 C -0.012 4.012 24 C -0.192 4.192 25 C -0.051 4.051 26 C -0.033 4.033 27 O -0.251 6.251 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 28.404 -8.417 -2.537 29.733 hybrid contribution 0.266 -1.493 -0.462 1.586 sum 28.670 -9.910 -2.999 30.483 Atomic orbital electron populations 1.70946 1.05595 1.29860 1.49898 1.25746 0.96203 1.00909 0.99011 0.83887 0.74969 0.75665 0.76658 1.22097 1.20016 1.22378 1.19920 0.85244 0.96609 1.41820 0.90419 1.45647 1.11182 1.12830 1.64511 1.22536 0.85559 0.96548 0.95836 1.23075 0.91862 0.98845 0.84814 1.22851 0.86977 0.93007 0.99374 1.22171 0.87266 0.96797 0.95665 1.48127 1.40378 1.28143 1.18183 1.20138 0.82459 0.80178 0.86834 1.90742 1.62739 1.65509 1.19972 1.22279 0.96777 0.89571 0.94765 1.88089 1.56621 1.40106 1.42193 1.22171 0.88899 0.91800 0.94149 1.22766 0.99650 0.98561 1.00958 1.22562 0.90962 0.98158 0.89579 1.87961 1.61096 1.32795 1.48180 1.22591 0.93446 0.90486 0.94707 1.22300 0.97724 1.00302 0.98833 1.22493 0.98499 1.00919 0.83238 1.22921 0.88498 0.96738 0.95189 1.88028 1.61851 1.45372 1.29800 0.92799 0.92249 0.92266 0.93361 0.93683 0.90462 0.87589 0.90311 0.90301 0.91883 0.89675 0.90539 0.93042 0.88336 0.92994 0.88126 0.89975 0.89710 0.90006 0.89372 0.87621 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.39 13.70 55.49 0.76 -28.63 16 2 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 3 Si 1.06 27.10 25.33 -169.99 -4.31 22.80 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.27 -6.72 6.56 56.52 0.37 -6.35 16 6 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.31 -9.16 10.96 -15.06 -0.17 -9.33 16 8 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 9 N -0.61 -15.63 3.58 -184.98 -0.66 -16.30 16 10 C 0.12 2.62 6.58 -8.36 -0.05 2.56 16 11 C 0.06 1.01 1.27 -90.96 -0.12 0.90 16 12 C 0.10 2.17 7.91 -8.22 -0.07 2.11 16 13 C 0.10 1.53 5.84 -3.68 -0.02 1.51 16 14 N -0.61 -7.66 3.03 -172.47 -0.52 -8.19 16 15 C 0.52 6.94 7.79 -10.98 -0.09 6.86 16 16 O -0.52 -9.23 16.00 -14.35 -0.23 -9.46 16 17 C 0.05 0.43 4.60 36.01 0.17 0.59 16 18 O -0.35 -3.99 9.53 -55.14 -0.53 -4.51 16 19 C 0.09 0.69 2.70 -26.55 -0.07 0.62 16 20 C -0.18 -1.32 5.76 -26.60 -0.15 -1.48 16 21 C 0.06 0.40 6.84 37.20 0.25 0.66 16 22 O -0.38 -3.15 10.77 -35.23 -0.38 -3.53 16 23 C 0.06 0.39 6.84 37.21 0.25 0.64 16 24 C -0.15 -1.12 5.79 -26.59 -0.15 -1.27 16 25 C 0.07 0.66 6.50 -3.58 -0.02 0.63 16 26 C 0.04 0.53 6.90 37.27 0.26 0.79 16 27 O -0.33 -5.91 10.53 -35.23 -0.37 -6.28 16 28 H 0.26 8.24 8.73 -40.82 -0.36 7.89 16 29 H 0.06 1.34 3.74 -51.93 -0.19 1.15 16 30 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.05 0.99 7.93 -51.93 -0.41 0.57 16 32 H 0.04 0.93 7.36 -51.93 -0.38 0.54 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 1.68 6.90 -51.93 -0.36 1.32 16 35 H 0.08 0.57 7.54 -51.93 -0.39 0.18 16 36 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 37 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.48 7.99 -51.93 -0.42 0.07 16 40 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.50 6.03 -51.93 -0.31 0.18 16 48 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.06 0.71 7.30 -51.93 -0.38 0.33 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -38.04 381.83 -8.47 -46.50 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.92 Total: -3.30 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.07 Total: 5.13 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.42 Total: -53.12 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.51 Total: -23.78 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -4.31 Total: 22.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.04 -8.47 -46.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053454141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.951 kcal (2) G-P(sol) polarization free energy of solvation -38.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds