Wall clock time and date at job start Sat Apr 11 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47279 * 274.14516 * 3 2 1 5 5 H 1.48505 * 109.47048 * 34.14535 * 3 2 1 6 6 H 1.48500 * 109.46970 * 154.14376 * 3 2 1 7 7 C 1.38814 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99809 * 195.97997 * 7 2 1 9 9 N 1.36940 * 119.99809 * 15.97613 * 7 2 1 10 10 C 1.47344 * 121.30715 * 27.34351 * 9 7 2 11 11 C 1.53195 * 108.80244 * 129.73304 * 10 9 7 12 12 O 1.43145 * 109.73616 * 51.21124 * 11 10 9 13 13 C 1.42597 * 113.63792 * 298.30948 * 12 11 10 14 14 H 1.08999 * 108.96471 * 304.15466 * 13 12 11 15 15 C 1.52788 * 111.11727 * 183.60970 * 13 12 11 16 16 C 1.53366 * 108.81624 * 177.47133 * 15 13 12 17 17 N 1.46514 * 108.79255 * 54.89468 * 16 15 13 18 18 C 1.34771 * 120.86313 * 127.36907 * 17 16 15 19 19 O 1.21286 * 119.99643 * 178.78105 * 18 17 16 20 20 C 1.50698 * 120.00452 * 358.78709 * 18 17 16 21 21 C 1.53003 * 109.47506 * 179.97438 * 20 18 17 22 22 O 1.42964 * 109.47071 * 295.00211 * 21 20 18 23 23 C 1.43087 * 113.76972 * 181.20316 * 22 21 20 24 24 C 1.53260 * 108.94372 * 57.96790 * 23 22 21 25 25 C 1.53259 * 108.84725 * 305.47543 * 24 23 22 26 26 O 1.42965 * 109.47043 * 174.99763 * 21 20 18 27 27 C 1.47123 * 118.71301 * 306.17389 * 17 16 15 28 28 C 1.46874 * 121.30211 * 207.32059 * 9 7 2 29 29 H 1.08998 * 109.65318 * 112.37322 * 28 9 7 30 30 H 0.96998 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09008 * 109.58579 * 249.53113 * 10 9 7 32 32 H 1.09007 * 109.58315 * 9.80001 * 10 9 7 33 33 H 1.08996 * 109.42606 * 171.29298 * 11 10 9 34 34 H 1.09003 * 109.42529 * 291.18715 * 11 10 9 35 35 H 1.09001 * 109.57851 * 297.27575 * 15 13 12 36 36 H 1.08999 * 109.57264 * 57.67386 * 15 13 12 37 37 H 1.09004 * 109.50343 * 173.76723 * 16 15 13 38 38 H 1.08995 * 109.51228 * 293.90354 * 16 15 13 39 39 H 1.08999 * 109.46805 * 299.99892 * 20 18 17 40 40 H 1.08998 * 109.47300 * 59.99597 * 20 18 17 41 41 H 1.09001 * 109.46605 * 54.99960 * 21 20 18 42 42 H 1.08995 * 109.56155 * 298.12657 * 23 22 21 43 43 H 1.08995 * 109.65061 * 177.85433 * 23 22 21 44 44 H 1.09000 * 109.57984 * 185.66810 * 24 23 22 45 45 H 1.09004 * 109.68504 * 65.34674 * 24 23 22 46 46 H 1.09003 * 109.56174 * 294.68711 * 25 24 23 47 47 H 1.08999 * 109.56478 * 174.35653 * 25 24 23 48 48 H 1.08998 * 109.73053 * 294.73618 * 27 17 16 49 49 H 1.09003 * 109.72950 * 174.06104 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4100 2.0970 -1.3964 5 1 1.4941 2.6258 0.7859 6 1 3.5888 1.4165 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0590 -1.2203 0.2569 9 7 1.3653 -2.3650 -0.3275 10 6 0.1928 -2.3654 -1.2198 11 6 0.4086 -3.4110 -2.3183 12 8 0.7684 -4.6647 -1.7285 13 6 1.9863 -4.6197 -0.9881 14 1 2.7819 -4.2535 -1.6369 15 6 2.3607 -6.0035 -0.4597 16 6 3.7055 -5.9067 0.2712 17 7 3.6076 -4.8730 1.3049 18 6 3.9444 -5.1387 2.5825 19 8 3.8783 -4.2651 3.4212 20 6 4.4032 -6.5211 2.9689 21 6 4.7218 -6.5532 4.4651 22 8 5.8344 -5.6965 4.7338 23 6 6.2293 -5.6784 6.1090 24 6 6.5765 -7.1059 6.5457 25 6 5.3861 -8.0210 6.2385 26 8 5.0447 -7.8902 4.8550 27 6 3.1585 -3.5265 0.9176 28 6 1.8155 -3.6609 0.1972 29 1 1.0686 -4.0574 0.8850 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7013 -2.6151 -0.6483 32 1 0.0754 -1.3792 -1.6692 33 1 -0.5111 -3.5304 -2.8909 34 1 1.2082 -3.0805 -2.9814 35 1 1.5931 -6.3504 0.2320 36 1 2.4470 -6.7013 -1.2926 37 1 3.9305 -6.8611 0.7474 38 1 4.4913 -5.6614 -0.4432 39 1 3.6141 -7.2403 2.7496 40 1 5.2976 -6.7789 2.4018 41 1 3.8543 -6.2098 5.0286 42 1 5.4096 -5.2993 6.7192 43 1 7.1021 -5.0371 6.2313 44 1 6.7817 -7.1207 7.6162 45 1 7.4543 -7.4533 6.0009 46 1 4.5343 -7.7306 6.8536 47 1 5.6563 -9.0552 6.4514 48 1 3.8904 -3.0724 0.2497 49 1 3.0384 -2.9086 1.8075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074222707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:07 Heat of formation + Delta-G solvation = -138.004332 kcal Electronic energy + Delta-G solvation = -31615.670905 eV Core-core repulsion = 27350.891235 eV Total energy + Delta-G solvation = -4264.779670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.47177 -39.76960 -38.47448 -36.09637 -35.77369 -34.70300 -33.42745 -31.91233 -31.37703 -30.46012 -29.58501 -27.08276 -26.19075 -25.34607 -23.92803 -23.61485 -21.96908 -21.44431 -21.19729 -19.70189 -18.86461 -17.78166 -17.01757 -16.89879 -16.48064 -16.19644 -15.54158 -15.42671 -15.31736 -15.02981 -14.94567 -14.76347 -14.49827 -13.94578 -13.81678 -13.49524 -13.38866 -13.04680 -13.04349 -12.88966 -12.69260 -12.50612 -12.04343 -11.85431 -11.77048 -11.34806 -11.31313 -11.28983 -11.00942 -10.94772 -10.80480 -10.60272 -10.24997 -10.21663 -10.19624 -9.98166 -9.82480 -9.62158 -9.54872 -8.98640 -8.53134 -8.33988 -6.73228 -5.83509 -3.28627 2.82214 2.89830 3.36284 3.43766 3.45314 3.50030 3.56353 4.24823 4.43825 4.44769 4.46373 4.59040 4.70154 4.81701 4.87734 4.98076 5.05788 5.15421 5.19781 5.28313 5.30893 5.37315 5.41122 5.45479 5.49314 5.55166 5.59815 5.71065 5.75713 5.76246 5.91028 5.95107 6.10669 6.15725 6.25489 6.33250 6.47253 6.62824 6.66257 6.71658 6.88014 7.01222 7.12600 7.49898 7.61842 7.73020 7.89234 8.32475 8.38510 9.10468 9.73839 10.31481 11.24657 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003191 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.151781 B = 8771.219140 C =10373.466627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.258 4.258 8 H 0.073 0.927 9 N -0.588 5.588 10 C 0.143 3.857 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.111 3.889 17 N -0.611 5.611 18 C 0.521 3.479 19 O -0.526 6.526 20 C -0.127 4.127 21 C 0.264 3.736 22 O -0.376 6.376 23 C 0.058 3.942 24 C -0.193 4.193 25 C 0.059 3.941 26 O -0.396 6.396 27 C 0.124 3.876 28 C 0.138 3.862 29 H 0.036 0.964 30 H 0.255 0.745 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -17.294 6.000 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.163 4.163 16 C -0.013 4.013 17 N -0.345 5.345 18 C 0.308 3.692 19 O -0.402 6.402 20 C -0.167 4.167 21 C 0.168 3.832 22 O -0.296 6.296 23 C -0.019 4.019 24 C -0.231 4.231 25 C -0.017 4.017 26 O -0.317 6.317 27 C 0.002 3.998 28 C 0.030 3.970 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.090 0.910 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.810 -16.850 6.186 20.455 hybrid contribution 0.343 1.167 0.340 1.263 sum 10.152 -15.683 6.527 19.789 Atomic orbital electron populations 1.70029 1.05287 1.25648 1.53534 1.25070 0.95321 0.98479 1.00413 0.86249 0.79301 0.83545 0.77579 1.21415 1.21666 1.20190 1.19163 0.92469 0.84154 1.42901 0.90983 1.44028 1.33927 1.00833 1.52437 1.21432 0.89003 0.97991 0.89863 1.23325 0.98948 0.85168 0.96388 1.87734 1.41130 1.32809 1.69233 1.22438 0.87051 0.94943 0.93885 0.92998 1.21864 0.96953 0.97136 1.00394 1.21664 0.97483 0.91379 0.90734 1.48121 1.65960 1.12940 1.07495 1.20059 0.77501 0.89541 0.82140 1.90744 1.52646 1.47751 1.49080 1.21497 1.04270 0.96703 0.94190 1.22897 0.88661 0.76760 0.94842 1.88186 1.50654 1.64866 1.25908 1.22604 1.00641 0.95711 0.82943 1.22814 1.00131 0.97327 1.02853 1.22630 0.96104 1.00752 0.82237 1.88045 1.88530 1.28884 1.26274 1.21724 0.95344 0.81449 1.01240 1.21277 0.94261 0.88561 0.92926 0.94647 0.93518 0.95420 0.88731 0.90070 0.94115 0.90808 0.90247 0.89626 0.90923 0.86675 0.87346 0.91642 0.92699 0.88364 0.89805 0.90058 0.92729 0.88315 0.91044 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.19 55.49 0.62 -25.33 16 2 C 0.01 0.17 4.97 -17.43 -0.09 0.09 16 3 Si 0.90 21.69 29.58 -169.99 -5.03 16.67 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.93 8.90 -15.06 -0.13 -7.06 16 8 H 0.07 1.90 6.33 -52.49 -0.33 1.56 16 9 N -0.59 -14.64 3.04 -164.35 -0.50 -15.14 16 10 C 0.14 3.41 5.43 -3.48 -0.02 3.39 16 11 C 0.04 0.77 6.95 37.26 0.26 1.03 16 12 O -0.39 -7.62 10.49 -35.23 -0.37 -7.99 16 13 C 0.08 1.37 2.49 -26.63 -0.07 1.31 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 15 C -0.12 -1.67 5.81 -26.65 -0.15 -1.82 16 16 C 0.11 1.29 6.35 -3.84 -0.02 1.27 16 17 N -0.61 -9.58 2.95 -172.96 -0.51 -10.09 16 18 C 0.52 8.37 7.58 -10.99 -0.08 8.28 16 19 O -0.53 -10.68 14.82 -8.84 -0.13 -10.81 16 20 C -0.13 -1.50 4.13 -27.88 -0.12 -1.61 16 21 C 0.26 3.38 2.80 37.16 0.10 3.49 16 22 O -0.38 -5.33 9.77 -64.75 -0.63 -5.96 16 23 C 0.06 0.60 6.96 37.29 0.26 0.86 16 24 C -0.19 -1.52 6.35 -26.46 -0.17 -1.69 16 25 C 0.06 0.50 6.96 37.29 0.26 0.76 16 26 O -0.40 -4.53 10.54 -59.03 -0.62 -5.15 16 27 C 0.12 2.44 4.49 -3.71 -0.02 2.42 16 28 C 0.14 2.92 3.00 -67.52 -0.20 2.72 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.09 2.45 6.23 -51.93 -0.32 2.13 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.73 5.90 -51.93 -0.31 0.42 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.12 1.08 7.71 -51.93 -0.40 0.68 16 40 H 0.11 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.41 7.42 -51.93 -0.39 1.02 16 49 H 0.10 2.34 6.83 -51.93 -0.35 1.99 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -33.47 375.46 -9.68 -43.16 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.98 Total: 1.56 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.19 Total: 13.42 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.39 Total: -50.56 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.76 Total: -29.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.47 -9.68 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.849 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds