Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47279 * 274.14516 * 3 2 1 5 5 H 1.48505 * 109.47048 * 34.14535 * 3 2 1 6 6 H 1.48500 * 109.46970 * 154.14376 * 3 2 1 7 7 C 1.38814 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99809 * 195.97997 * 7 2 1 9 9 N 1.36940 * 119.99809 * 15.97613 * 7 2 1 10 10 C 1.47344 * 121.30715 * 27.34351 * 9 7 2 11 11 C 1.53195 * 108.80244 * 129.73304 * 10 9 7 12 12 O 1.43145 * 109.73616 * 51.21124 * 11 10 9 13 13 C 1.42597 * 113.63792 * 298.30948 * 12 11 10 14 14 H 1.08999 * 108.96471 * 304.15466 * 13 12 11 15 15 C 1.52788 * 111.11727 * 183.60970 * 13 12 11 16 16 C 1.53366 * 108.81624 * 177.47133 * 15 13 12 17 17 N 1.46514 * 108.79255 * 54.89468 * 16 15 13 18 18 C 1.34771 * 120.86313 * 127.36907 * 17 16 15 19 19 O 1.21286 * 119.99643 * 178.78105 * 18 17 16 20 20 C 1.50698 * 120.00452 * 358.78709 * 18 17 16 21 21 C 1.53003 * 109.47506 * 179.97438 * 20 18 17 22 22 O 1.42964 * 109.47071 * 295.00211 * 21 20 18 23 23 C 1.43087 * 113.76972 * 181.20316 * 22 21 20 24 24 C 1.53260 * 108.94372 * 57.96790 * 23 22 21 25 25 C 1.53259 * 108.84725 * 305.47543 * 24 23 22 26 26 O 1.42965 * 109.47043 * 174.99763 * 21 20 18 27 27 C 1.47123 * 118.71301 * 306.17389 * 17 16 15 28 28 C 1.46874 * 121.30211 * 207.32059 * 9 7 2 29 29 H 1.08998 * 109.65318 * 112.37322 * 28 9 7 30 30 H 0.96998 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09008 * 109.58579 * 249.53113 * 10 9 7 32 32 H 1.09007 * 109.58315 * 9.80001 * 10 9 7 33 33 H 1.08996 * 109.42606 * 171.29298 * 11 10 9 34 34 H 1.09003 * 109.42529 * 291.18715 * 11 10 9 35 35 H 1.09001 * 109.57851 * 297.27575 * 15 13 12 36 36 H 1.08999 * 109.57264 * 57.67386 * 15 13 12 37 37 H 1.09004 * 109.50343 * 173.76723 * 16 15 13 38 38 H 1.08995 * 109.51228 * 293.90354 * 16 15 13 39 39 H 1.08999 * 109.46805 * 299.99892 * 20 18 17 40 40 H 1.08998 * 109.47300 * 59.99597 * 20 18 17 41 41 H 1.09001 * 109.46605 * 54.99960 * 21 20 18 42 42 H 1.08995 * 109.56155 * 298.12657 * 23 22 21 43 43 H 1.08995 * 109.65061 * 177.85433 * 23 22 21 44 44 H 1.09000 * 109.57984 * 185.66810 * 24 23 22 45 45 H 1.09004 * 109.68504 * 65.34674 * 24 23 22 46 46 H 1.09003 * 109.56174 * 294.68711 * 25 24 23 47 47 H 1.08999 * 109.56478 * 174.35653 * 25 24 23 48 48 H 1.08998 * 109.73053 * 294.73618 * 27 17 16 49 49 H 1.09003 * 109.72950 * 174.06104 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4100 2.0970 -1.3964 5 1 1.4941 2.6258 0.7859 6 1 3.5888 1.4165 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0590 -1.2203 0.2569 9 7 1.3653 -2.3650 -0.3275 10 6 0.1928 -2.3654 -1.2198 11 6 0.4086 -3.4110 -2.3183 12 8 0.7684 -4.6647 -1.7285 13 6 1.9863 -4.6197 -0.9881 14 1 2.7819 -4.2535 -1.6369 15 6 2.3607 -6.0035 -0.4597 16 6 3.7055 -5.9067 0.2712 17 7 3.6076 -4.8730 1.3049 18 6 3.9444 -5.1387 2.5825 19 8 3.8783 -4.2651 3.4212 20 6 4.4032 -6.5211 2.9689 21 6 4.7218 -6.5532 4.4651 22 8 5.8344 -5.6965 4.7338 23 6 6.2293 -5.6784 6.1090 24 6 6.5765 -7.1059 6.5457 25 6 5.3861 -8.0210 6.2385 26 8 5.0447 -7.8902 4.8550 27 6 3.1585 -3.5265 0.9176 28 6 1.8155 -3.6609 0.1972 29 1 1.0686 -4.0574 0.8850 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7013 -2.6151 -0.6483 32 1 0.0754 -1.3792 -1.6692 33 1 -0.5111 -3.5304 -2.8909 34 1 1.2082 -3.0805 -2.9814 35 1 1.5931 -6.3504 0.2320 36 1 2.4470 -6.7013 -1.2926 37 1 3.9305 -6.8611 0.7474 38 1 4.4913 -5.6614 -0.4432 39 1 3.6141 -7.2403 2.7496 40 1 5.2976 -6.7789 2.4018 41 1 3.8543 -6.2098 5.0286 42 1 5.4096 -5.2993 6.7192 43 1 7.1021 -5.0371 6.2313 44 1 6.7817 -7.1207 7.6162 45 1 7.4543 -7.4533 6.0009 46 1 4.5343 -7.7306 6.8536 47 1 5.6563 -9.0552 6.4514 48 1 3.8904 -3.0724 0.2497 49 1 3.0384 -2.9086 1.8075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074222707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = -161.610440 kcal Electronic energy + Delta-G solvation = -31616.694543 eV Core-core repulsion = 27350.891235 eV Total energy + Delta-G solvation = -4265.803308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.65678 -40.86632 -39.91232 -37.45922 -36.66705 -36.54131 -34.32188 -33.48726 -32.98860 -31.72738 -30.88819 -28.88761 -26.95480 -26.83452 -25.47475 -24.78123 -23.48046 -22.74917 -22.11446 -21.41719 -20.08036 -18.82002 -18.70436 -18.07639 -17.44367 -17.36900 -17.09320 -16.84980 -16.60523 -16.34925 -16.17628 -15.75215 -15.71911 -15.52689 -15.45352 -14.84731 -14.69886 -14.50655 -14.29372 -14.03163 -13.96321 -13.73503 -13.32830 -13.07719 -12.98066 -12.85209 -12.70937 -12.42168 -12.37627 -12.35189 -12.11177 -12.08473 -12.02627 -11.90285 -11.72710 -11.24624 -11.00894 -10.87673 -10.76162 -10.68386 -10.52677 -9.69849 -8.75948 -7.93415 -5.41788 1.42980 1.44062 1.53324 1.59156 1.75179 2.44287 2.62869 2.64123 2.84370 3.21431 3.44279 3.53730 3.75769 3.78652 3.80539 3.86346 3.94723 4.05383 4.11290 4.19765 4.22426 4.28887 4.39609 4.40670 4.43778 4.45728 4.50630 4.56515 4.59198 4.66419 4.73671 4.82284 4.83740 4.84881 4.88064 5.01442 5.10973 5.11811 5.12806 5.32324 5.44005 5.52614 5.60573 5.82371 6.14792 6.24684 6.33617 6.40158 7.02995 7.13637 7.70756 8.25861 9.12771 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003191 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.151781 B = 8771.219140 C =10373.466627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.606 5.606 10 C 0.147 3.853 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.056 0.944 15 C -0.116 4.116 16 C 0.107 3.893 17 N -0.609 5.609 18 C 0.515 3.485 19 O -0.580 6.580 20 C -0.115 4.115 21 C 0.263 3.737 22 O -0.405 6.405 23 C 0.045 3.955 24 C -0.183 4.183 25 C 0.048 3.952 26 O -0.401 6.401 27 C 0.139 3.861 28 C 0.135 3.865 29 H 0.004 0.996 30 H 0.251 0.749 31 H -0.004 1.004 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.125 0.875 48 H 0.070 0.930 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 -20.463 5.193 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.091 0.909 9 N -0.331 5.331 10 C 0.021 3.979 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.020 3.980 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.014 4.014 17 N -0.343 5.343 18 C 0.304 3.696 19 O -0.459 6.459 20 C -0.154 4.154 21 C 0.167 3.833 22 O -0.326 6.326 23 C -0.031 4.031 24 C -0.221 4.221 25 C -0.028 4.028 26 O -0.322 6.322 27 C 0.016 3.984 28 C 0.027 3.973 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.014 0.986 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.112 0.888 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.143 0.857 48 H 0.088 0.912 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.957 -20.084 5.360 23.981 hybrid contribution -0.328 2.125 0.700 2.262 sum 11.629 -17.959 6.060 22.237 Atomic orbital electron populations 1.70182 1.06644 1.25970 1.55273 1.25827 0.96084 1.01529 1.00909 0.85266 0.78075 0.79549 0.77678 1.20506 1.22266 1.19594 1.19449 0.92715 0.85181 1.41735 0.90920 1.44330 1.33970 1.01781 1.53037 1.21301 0.87715 0.98288 0.90594 1.23161 1.00709 0.83940 0.94700 1.87745 1.41982 1.32182 1.69181 1.22549 0.86543 0.96915 0.91953 0.92591 1.21909 0.97579 0.94489 1.01507 1.22069 0.97108 0.91956 0.90261 1.48191 1.65341 1.12088 1.08652 1.20903 0.76356 0.90863 0.81463 1.90723 1.54823 1.49798 1.50591 1.21512 1.06133 0.93854 0.93923 1.22802 0.87867 0.77360 0.95266 1.88142 1.51037 1.65644 1.27822 1.22847 1.00744 0.97925 0.81623 1.22753 0.99792 0.95112 1.04428 1.22948 0.96507 1.02385 0.80922 1.88014 1.88578 1.27571 1.28005 1.21212 0.94634 0.83691 0.98878 1.21432 0.93905 0.87691 0.94233 0.97827 0.93970 0.98628 0.91253 0.87280 0.93178 0.91267 0.86655 0.85138 0.88793 0.83476 0.84805 0.93575 0.93254 0.87647 0.87180 0.90034 0.92323 0.85725 0.91202 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 11.19 21.65 0.24 -56.07 16 2 C -0.05 -2.72 4.97 84.86 0.42 -2.30 16 3 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.26 -14.56 8.90 84.03 0.75 -13.81 16 8 H 0.07 3.96 6.33 -2.91 -0.02 3.95 16 9 N -0.61 -31.35 3.04 -673.87 -2.05 -33.40 16 10 C 0.15 7.27 5.43 86.28 0.47 7.73 16 11 C 0.05 2.02 6.95 72.05 0.50 2.52 16 12 O -0.39 -14.64 10.49 -148.98 -1.56 -16.20 16 13 C 0.08 2.72 2.49 30.66 0.08 2.80 16 14 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 15 C -0.12 -2.67 5.81 30.65 0.18 -2.50 16 16 C 0.11 2.05 6.35 86.50 0.55 2.60 16 17 N -0.61 -18.41 2.95 -819.50 -2.42 -20.83 16 18 C 0.51 16.26 7.58 87.66 0.66 16.92 16 19 O -0.58 -24.54 14.82 10.71 0.16 -24.38 16 20 C -0.12 -2.41 4.13 29.85 0.12 -2.29 16 21 C 0.26 6.45 2.80 71.98 0.20 6.65 16 22 O -0.41 -11.35 9.77 -120.76 -1.18 -12.53 16 23 C 0.04 0.91 6.96 72.07 0.50 1.41 16 24 C -0.18 -2.50 6.35 30.77 0.20 -2.31 16 25 C 0.05 0.69 6.96 72.07 0.50 1.20 16 26 O -0.40 -8.20 10.54 -126.22 -1.33 -9.53 16 27 C 0.14 5.64 4.49 86.26 0.39 6.02 16 28 C 0.13 5.86 3.00 45.05 0.14 6.00 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 32 H 0.07 3.76 6.23 -2.38 -0.01 3.75 16 33 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.13 1.42 5.90 -2.38 -0.01 1.41 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.15 2.13 7.71 -2.39 -0.02 2.12 16 40 H 0.13 2.18 7.92 -2.39 -0.02 2.16 16 41 H 0.05 1.28 7.95 -2.39 -0.02 1.26 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 2.81 7.42 -2.39 -0.02 2.79 16 49 H 0.06 2.83 6.83 -2.39 -0.02 2.82 16 Total: -1.00 -79.00 375.46 0.48 -78.51 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.94 Total: 15.82 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 5.65 Total: 30.65 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.22 Total: -110.29 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -3.91 Total: -62.64 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.00 0.48 -78.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.098 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds