Wall clock time and date at job start Sat Apr 11 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47284 * 271.97022 * 3 2 1 5 5 H 1.48504 * 109.47424 * 31.97199 * 3 2 1 6 6 H 1.48502 * 109.47377 * 151.97042 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 339.69386 * 7 2 1 9 9 N 1.36937 * 120.00000 * 159.68880 * 7 2 1 10 10 C 1.47166 * 121.22526 * 333.94206 * 9 7 2 11 11 C 1.53227 * 108.70140 * 230.93773 * 10 9 7 12 12 O 1.43068 * 109.44616 * 308.41841 * 11 10 9 13 13 C 1.42686 * 113.87221 * 61.65185 * 12 11 10 14 14 H 1.09001 * 108.39413 * 55.27086 * 13 12 11 15 15 C 1.52507 * 110.62692 * 174.64586 * 13 12 11 16 16 C 1.53596 * 109.72904 * 61.16687 * 15 13 12 17 17 N 1.46979 * 108.21066 * 54.74312 * 16 15 13 18 18 C 1.34768 * 120.71792 * 125.44287 * 17 16 15 19 19 O 1.21287 * 120.00059 * 179.72387 * 18 17 16 20 20 C 1.50703 * 120.00462 * 359.72424 * 18 17 16 21 21 C 1.52996 * 109.47451 * 179.97438 * 20 18 17 22 22 O 1.42964 * 109.47172 * 174.99673 * 21 20 18 23 23 C 1.43091 * 113.77033 * 178.79307 * 22 21 20 24 24 C 1.53258 * 108.94743 * 302.03570 * 23 22 21 25 25 C 1.53263 * 108.94985 * 54.45878 * 24 23 22 26 26 O 1.42969 * 109.47571 * 295.00263 * 21 20 18 27 27 C 1.46793 * 118.55998 * 305.17584 * 17 16 15 28 28 C 1.47597 * 121.22142 * 153.94157 * 9 7 2 29 29 H 1.08993 * 111.16934 * 7.20643 * 28 9 7 30 30 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.59909 * 111.17681 * 10 9 7 32 32 H 1.09002 * 109.72992 * 350.78108 * 10 9 7 33 33 H 1.09007 * 109.47395 * 188.41983 * 11 10 9 34 34 H 1.09001 * 109.47823 * 68.41416 * 11 10 9 35 35 H 1.08997 * 109.42003 * 181.39024 * 15 13 12 36 36 H 1.09006 * 109.41105 * 301.25940 * 15 13 12 37 37 H 1.09006 * 109.79331 * 295.11121 * 16 15 13 38 38 H 1.08999 * 109.72819 * 174.34088 * 16 15 13 39 39 H 1.09002 * 109.46538 * 59.99489 * 20 18 17 40 40 H 1.08995 * 109.46713 * 300.00284 * 20 18 17 41 41 H 1.09007 * 109.47104 * 55.00038 * 21 20 18 42 42 H 1.08998 * 109.56160 * 182.19143 * 23 22 21 43 43 H 1.09004 * 109.55415 * 61.87248 * 23 22 21 44 44 H 1.08997 * 109.57838 * 174.32720 * 24 23 22 45 45 H 1.08997 * 109.57368 * 294.58747 * 24 23 22 46 46 H 1.09001 * 109.55959 * 65.37837 * 25 24 23 47 47 H 1.08993 * 109.55880 * 185.70782 * 25 24 23 48 48 H 1.09000 * 109.52108 * 174.44379 * 27 17 16 49 49 H 1.09003 * 109.51642 * 294.56665 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4561 2.0704 -1.3992 5 1 1.4692 2.6403 0.7413 6 1 3.5680 1.4284 0.6579 7 6 2.0102 -1.2022 0.0005 8 1 1.5205 -2.1082 0.3255 9 7 3.3157 -1.2392 -0.4111 10 6 3.8465 -0.2432 -1.3555 11 6 4.5523 -0.9783 -2.4997 12 8 5.4909 -1.9126 -1.9583 13 6 4.8956 -2.9261 -1.1495 14 1 4.1263 -3.4274 -1.7370 15 6 5.9385 -3.9530 -0.7209 16 6 7.0298 -3.2663 0.1138 17 7 6.3806 -2.5636 1.2296 18 6 6.7557 -2.7984 2.5025 19 8 6.2146 -2.2074 3.4130 20 6 7.8476 -3.7952 2.7948 21 6 8.0777 -3.8713 4.3054 22 8 9.0296 -4.8990 4.5913 23 6 9.3348 -5.0316 5.9829 24 6 9.8676 -3.6929 6.5053 25 6 8.8524 -2.5920 6.1796 26 8 8.5756 -2.6163 4.7756 27 6 5.3189 -1.5961 0.9270 28 6 4.2423 -2.2797 0.0762 29 1 3.7161 -3.0311 0.6647 30 1 -0.4850 0.8401 -0.0004 31 1 4.5581 0.4041 -0.8428 32 1 3.0290 0.3567 -1.7556 33 1 5.0775 -0.2569 -3.1259 34 1 3.8143 -1.5108 -3.0997 35 1 5.4588 -4.7300 -0.1257 36 1 6.3904 -4.4014 -1.6058 37 1 7.5717 -2.5505 -0.5044 38 1 7.7200 -4.0144 0.5039 39 1 8.7679 -3.4805 2.3027 40 1 7.5532 -4.7761 2.4218 41 1 7.1362 -4.0989 4.8054 42 1 10.0921 -5.8037 6.1185 43 1 8.4321 -5.3036 6.5301 44 1 10.0085 -3.7520 7.5845 45 1 10.8192 -3.4661 6.0246 46 1 7.9310 -2.7694 6.7344 47 1 9.2652 -1.6217 6.4554 48 1 4.8760 -1.2387 1.8566 49 1 5.7394 -0.7544 0.3766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074222708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:12 Heat of formation + Delta-G solvation = -131.227745 kcal Electronic energy + Delta-G solvation = -31857.387021 eV Core-core repulsion = 27592.901206 eV Total energy + Delta-G solvation = -4264.485815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.51441 -39.89582 -38.64345 -35.94841 -35.75333 -34.88696 -33.44291 -31.97700 -31.75532 -30.62046 -29.65724 -27.66660 -26.21280 -25.23613 -24.17486 -23.28524 -22.97993 -21.60475 -21.37645 -19.56407 -18.50392 -17.78218 -17.06861 -16.96014 -16.59840 -16.15435 -15.73571 -15.68833 -15.56548 -15.33687 -14.97334 -14.85530 -14.47059 -14.24644 -14.11718 -13.51615 -13.47943 -13.27030 -13.07444 -12.78759 -12.64774 -12.54399 -12.20210 -12.06483 -11.78877 -11.76004 -11.49195 -11.33635 -11.32038 -11.14347 -10.98796 -10.61097 -10.34979 -10.23630 -10.18480 -9.85741 -9.79575 -9.63178 -9.52478 -9.38196 -8.60234 -8.36545 -7.05853 -6.01935 -3.39536 2.81709 2.89945 3.26055 3.46034 3.48031 3.48755 3.55810 4.12118 4.43063 4.44446 4.46140 4.57128 4.63578 4.71356 4.80302 4.93140 5.00586 5.04668 5.07053 5.13552 5.23808 5.28650 5.32529 5.43088 5.48220 5.50250 5.55124 5.58576 5.64034 5.74246 5.80643 5.82540 5.84784 5.98924 6.01333 6.11996 6.19564 6.36468 6.50227 6.54632 6.61395 6.67197 6.78763 6.99730 7.62191 7.63962 7.79438 8.23438 8.38389 8.80230 9.61469 9.96226 11.13570 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.003175 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.754833 B = 8815.834358 C = 9821.221249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.261 4.261 8 H 0.089 0.911 9 N -0.598 5.598 10 C 0.087 3.913 11 C 0.050 3.950 12 O -0.384 6.384 13 C 0.079 3.921 14 H 0.058 0.942 15 C -0.123 4.123 16 C 0.110 3.890 17 N -0.607 5.607 18 C 0.518 3.482 19 O -0.531 6.531 20 C -0.126 4.126 21 C 0.264 3.736 22 O -0.396 6.396 23 C 0.059 3.941 24 C -0.193 4.193 25 C 0.058 3.942 26 O -0.377 6.377 27 C 0.102 3.898 28 C 0.140 3.860 29 H 0.085 0.915 30 H 0.264 0.736 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.117 -10.674 5.215 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.106 0.894 9 N -0.322 5.322 10 C -0.038 4.038 11 C -0.028 4.028 12 O -0.303 6.303 13 C 0.019 3.981 14 H 0.076 0.924 15 C -0.161 4.161 16 C -0.013 4.013 17 N -0.341 5.341 18 C 0.305 3.695 19 O -0.408 6.408 20 C -0.166 4.166 21 C 0.169 3.831 22 O -0.317 6.317 23 C -0.017 4.017 24 C -0.231 4.231 25 C -0.019 4.019 26 O -0.297 6.297 27 C -0.021 4.021 28 C 0.031 3.969 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.905 -10.186 5.419 23.007 hybrid contribution 0.002 1.045 0.403 1.120 sum 19.907 -9.141 5.821 22.666 Atomic orbital electron populations 1.69815 1.05689 1.26719 1.52480 1.25245 0.95239 0.97563 0.99201 0.87004 0.80191 0.84602 0.77052 1.21557 1.22921 1.19371 1.18880 0.83918 0.94983 1.41106 0.89353 1.44553 1.07976 1.31459 1.48191 1.22043 0.97843 0.92768 0.91140 1.23053 0.92199 0.91830 0.95703 1.87736 1.34306 1.41263 1.66971 1.22280 0.94385 0.88560 0.92852 0.92419 1.21884 0.96827 0.97292 1.00134 1.21795 0.94898 0.96305 0.88284 1.48171 1.37880 1.42749 1.05283 1.20100 0.83548 0.83199 0.82680 1.90734 1.55578 1.50357 1.44100 1.21490 1.00038 1.01037 0.94013 1.22901 0.89493 0.76591 0.94141 1.88043 1.63814 1.54853 1.25032 1.22624 1.00269 0.97083 0.81726 1.22811 1.00976 0.96817 1.02535 1.22615 0.97387 0.99595 0.82272 1.88182 1.84975 1.33267 1.23279 1.22288 0.87391 0.91212 1.01236 1.21597 0.90121 0.92338 0.92805 0.89722 0.92594 0.94731 0.89960 0.89628 0.92998 0.90117 0.90160 0.90447 0.90048 0.87419 0.86733 0.91672 0.88300 0.92730 0.89795 0.90073 0.92717 0.88373 0.89082 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.97 55.49 0.78 -26.74 16 2 C 0.03 0.77 5.26 -17.43 -0.09 0.68 16 3 Si 0.88 22.33 24.31 -169.99 -4.13 18.20 16 4 H -0.29 -6.91 6.58 56.52 0.37 -6.54 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.79 6.57 56.52 0.37 -6.42 16 7 C -0.26 -7.19 10.16 -15.06 -0.15 -7.34 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.60 -13.93 2.50 -163.87 -0.41 -14.34 16 10 C 0.09 1.86 3.86 -3.56 -0.01 1.85 16 11 C 0.05 0.88 6.97 37.27 0.26 1.14 16 12 O -0.38 -6.48 9.59 -35.23 -0.34 -6.82 16 13 C 0.08 1.27 2.73 -26.88 -0.07 1.20 16 14 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 15 C -0.12 -1.45 5.84 -26.67 -0.16 -1.61 16 16 C 0.11 1.28 6.20 -3.47 -0.02 1.26 16 17 N -0.61 -9.34 2.95 -172.51 -0.51 -9.85 16 18 C 0.52 8.19 7.58 -10.99 -0.08 8.11 16 19 O -0.53 -10.65 14.83 -8.84 -0.13 -10.78 16 20 C -0.13 -1.46 4.13 -27.88 -0.12 -1.58 16 21 C 0.26 3.34 2.80 37.16 0.10 3.45 16 22 O -0.40 -4.46 10.54 -59.03 -0.62 -5.08 16 23 C 0.06 0.49 6.96 37.29 0.26 0.75 16 24 C -0.19 -1.51 6.35 -26.46 -0.17 -1.68 16 25 C 0.06 0.60 6.97 37.29 0.26 0.86 16 26 O -0.38 -5.32 9.77 -64.75 -0.63 -5.95 16 27 C 0.10 1.96 5.62 -3.72 -0.02 1.94 16 28 C 0.14 2.72 3.00 -67.07 -0.20 2.52 16 29 H 0.08 1.71 8.03 -51.93 -0.42 1.29 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.03 0.75 5.95 -51.93 -0.31 0.44 16 32 H 0.08 1.89 4.58 -51.93 -0.24 1.65 16 33 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 34 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.08 0.68 5.94 -51.93 -0.31 0.37 16 39 H 0.11 1.12 7.92 -51.93 -0.41 0.71 16 40 H 0.11 1.03 7.72 -51.93 -0.40 0.63 16 41 H 0.07 0.87 7.96 -51.92 -0.41 0.46 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 49 H 0.07 1.32 6.57 -51.93 -0.34 0.97 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -34.16 368.65 -8.54 -42.70 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.88 Total: 1.57 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.21 Total: 11.55 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.14 Total: -50.93 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.72 Total: -28.64 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.13 Total: 18.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.16 -8.54 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.527 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds