Wall clock time and date at job start Sat Apr 11 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47284 * 271.97022 * 3 2 1 5 5 H 1.48504 * 109.47424 * 31.97199 * 3 2 1 6 6 H 1.48502 * 109.47377 * 151.97042 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 339.69386 * 7 2 1 9 9 N 1.36937 * 120.00000 * 159.68880 * 7 2 1 10 10 C 1.47166 * 121.22526 * 333.94206 * 9 7 2 11 11 C 1.53227 * 108.70140 * 230.93773 * 10 9 7 12 12 O 1.43068 * 109.44616 * 308.41841 * 11 10 9 13 13 C 1.42686 * 113.87221 * 61.65185 * 12 11 10 14 14 H 1.09001 * 108.39413 * 55.27086 * 13 12 11 15 15 C 1.52507 * 110.62692 * 174.64586 * 13 12 11 16 16 C 1.53596 * 109.72904 * 61.16687 * 15 13 12 17 17 N 1.46979 * 108.21066 * 54.74312 * 16 15 13 18 18 C 1.34768 * 120.71792 * 125.44287 * 17 16 15 19 19 O 1.21287 * 120.00059 * 179.72387 * 18 17 16 20 20 C 1.50703 * 120.00462 * 359.72424 * 18 17 16 21 21 C 1.52996 * 109.47451 * 179.97438 * 20 18 17 22 22 O 1.42964 * 109.47172 * 174.99673 * 21 20 18 23 23 C 1.43091 * 113.77033 * 178.79307 * 22 21 20 24 24 C 1.53258 * 108.94743 * 302.03570 * 23 22 21 25 25 C 1.53263 * 108.94985 * 54.45878 * 24 23 22 26 26 O 1.42969 * 109.47571 * 295.00263 * 21 20 18 27 27 C 1.46793 * 118.55998 * 305.17584 * 17 16 15 28 28 C 1.47597 * 121.22142 * 153.94157 * 9 7 2 29 29 H 1.08993 * 111.16934 * 7.20643 * 28 9 7 30 30 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.59909 * 111.17681 * 10 9 7 32 32 H 1.09002 * 109.72992 * 350.78108 * 10 9 7 33 33 H 1.09007 * 109.47395 * 188.41983 * 11 10 9 34 34 H 1.09001 * 109.47823 * 68.41416 * 11 10 9 35 35 H 1.08997 * 109.42003 * 181.39024 * 15 13 12 36 36 H 1.09006 * 109.41105 * 301.25940 * 15 13 12 37 37 H 1.09006 * 109.79331 * 295.11121 * 16 15 13 38 38 H 1.08999 * 109.72819 * 174.34088 * 16 15 13 39 39 H 1.09002 * 109.46538 * 59.99489 * 20 18 17 40 40 H 1.08995 * 109.46713 * 300.00284 * 20 18 17 41 41 H 1.09007 * 109.47104 * 55.00038 * 21 20 18 42 42 H 1.08998 * 109.56160 * 182.19143 * 23 22 21 43 43 H 1.09004 * 109.55415 * 61.87248 * 23 22 21 44 44 H 1.08997 * 109.57838 * 174.32720 * 24 23 22 45 45 H 1.08997 * 109.57368 * 294.58747 * 24 23 22 46 46 H 1.09001 * 109.55959 * 65.37837 * 25 24 23 47 47 H 1.08993 * 109.55880 * 185.70782 * 25 24 23 48 48 H 1.09000 * 109.52108 * 174.44379 * 27 17 16 49 49 H 1.09003 * 109.51642 * 294.56665 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4561 2.0704 -1.3992 5 1 1.4692 2.6403 0.7413 6 1 3.5680 1.4284 0.6579 7 6 2.0102 -1.2022 0.0005 8 1 1.5205 -2.1082 0.3255 9 7 3.3157 -1.2392 -0.4111 10 6 3.8465 -0.2432 -1.3555 11 6 4.5523 -0.9783 -2.4997 12 8 5.4909 -1.9126 -1.9583 13 6 4.8956 -2.9261 -1.1495 14 1 4.1263 -3.4274 -1.7370 15 6 5.9385 -3.9530 -0.7209 16 6 7.0298 -3.2663 0.1138 17 7 6.3806 -2.5636 1.2296 18 6 6.7557 -2.7984 2.5025 19 8 6.2146 -2.2074 3.4130 20 6 7.8476 -3.7952 2.7948 21 6 8.0777 -3.8713 4.3054 22 8 9.0296 -4.8990 4.5913 23 6 9.3348 -5.0316 5.9829 24 6 9.8676 -3.6929 6.5053 25 6 8.8524 -2.5920 6.1796 26 8 8.5756 -2.6163 4.7756 27 6 5.3189 -1.5961 0.9270 28 6 4.2423 -2.2797 0.0762 29 1 3.7161 -3.0311 0.6647 30 1 -0.4850 0.8401 -0.0004 31 1 4.5581 0.4041 -0.8428 32 1 3.0290 0.3567 -1.7556 33 1 5.0775 -0.2569 -3.1259 34 1 3.8143 -1.5108 -3.0997 35 1 5.4588 -4.7300 -0.1257 36 1 6.3904 -4.4014 -1.6058 37 1 7.5717 -2.5505 -0.5044 38 1 7.7200 -4.0144 0.5039 39 1 8.7679 -3.4805 2.3027 40 1 7.5532 -4.7761 2.4218 41 1 7.1362 -4.0989 4.8054 42 1 10.0921 -5.8037 6.1185 43 1 8.4321 -5.3036 6.5301 44 1 10.0085 -3.7520 7.5845 45 1 10.8192 -3.4661 6.0246 46 1 7.9310 -2.7694 6.7344 47 1 9.2652 -1.6217 6.4554 48 1 4.8760 -1.2387 1.8566 49 1 5.7394 -0.7544 0.3766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074222708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:11 Heat of formation + Delta-G solvation = -156.494727 kcal Electronic energy + Delta-G solvation = -31858.482679 eV Core-core repulsion = 27592.901206 eV Total energy + Delta-G solvation = -4265.581474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70963 -40.94275 -39.95410 -37.21759 -36.67155 -36.60132 -34.31547 -33.79036 -33.20411 -31.79412 -30.84910 -29.38826 -26.94804 -26.50110 -25.67295 -24.82191 -24.21231 -22.98996 -22.13216 -20.98656 -19.77272 -19.02970 -18.74686 -18.02206 -17.57114 -17.48927 -17.20765 -17.04231 -16.80380 -16.45487 -16.00912 -15.88294 -15.74481 -15.71313 -15.59189 -14.87283 -14.61901 -14.50255 -14.29986 -14.15613 -13.98986 -13.86838 -13.71377 -13.28822 -13.24404 -12.96698 -12.79001 -12.43724 -12.40792 -12.20212 -12.14382 -12.08878 -11.97266 -11.89677 -11.56240 -11.34061 -11.10663 -11.01360 -10.86185 -10.68504 -10.46931 -9.74764 -8.94764 -8.25008 -5.58054 1.20002 1.35977 1.43101 1.60970 1.78497 2.32265 2.61263 2.63962 2.80159 2.96856 3.15823 3.53179 3.74662 3.77921 3.78489 3.83489 3.96908 3.99537 4.09277 4.13052 4.20187 4.22392 4.25364 4.34270 4.39313 4.40507 4.43646 4.49493 4.60270 4.61861 4.69877 4.78677 4.81420 4.82685 4.84193 4.86952 4.94060 5.00960 5.10261 5.12963 5.28589 5.45824 5.72734 5.82265 6.03477 6.14725 6.23834 6.44464 6.75270 7.16030 7.47722 7.88169 8.94645 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016072 B = 0.003175 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.754833 B = 8815.834358 C = 9821.221249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.028 4.028 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.311 1.311 6 H -0.272 1.272 7 C -0.248 4.248 8 H 0.055 0.945 9 N -0.614 5.614 10 C 0.081 3.919 11 C 0.059 3.941 12 O -0.376 6.376 13 C 0.084 3.916 14 H 0.051 0.949 15 C -0.116 4.116 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.512 3.488 19 O -0.584 6.584 20 C -0.114 4.114 21 C 0.263 3.737 22 O -0.401 6.401 23 C 0.049 3.951 24 C -0.184 4.184 25 C 0.045 3.955 26 O -0.408 6.408 27 C 0.118 3.882 28 C 0.136 3.864 29 H 0.067 0.933 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.048 0.952 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.105 0.895 48 H 0.047 0.953 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.113 -12.382 4.058 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.224 4.224 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.240 1.240 6 H -0.198 1.198 7 C -0.378 4.378 8 H 0.073 0.927 9 N -0.339 5.339 10 C -0.043 4.043 11 C -0.019 4.019 12 O -0.294 6.294 13 C 0.024 3.976 14 H 0.069 0.931 15 C -0.154 4.154 16 C -0.014 4.014 17 N -0.338 5.338 18 C 0.302 3.698 19 O -0.464 6.464 20 C -0.153 4.153 21 C 0.167 3.833 22 O -0.322 6.322 23 C -0.027 4.027 24 C -0.221 4.221 25 C -0.031 4.031 26 O -0.329 6.329 27 C -0.008 4.008 28 C 0.028 3.972 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.123 0.877 48 H 0.066 0.934 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 23.977 -11.935 4.224 27.114 hybrid contribution -1.232 1.481 0.854 2.108 sum 22.745 -10.454 5.078 25.542 Atomic orbital electron populations 1.69933 1.07216 1.27338 1.55276 1.25817 0.95815 1.00637 1.00094 0.86017 0.78278 0.80543 0.78094 1.18843 1.23956 1.19768 1.18796 0.85845 0.93712 1.39420 0.92744 1.44656 1.07240 1.32724 1.49235 1.22129 0.97414 0.92758 0.92037 1.23001 0.92536 0.92288 0.94111 1.87762 1.33902 1.41112 1.66670 1.22308 0.95827 0.88832 0.90608 0.93127 1.21946 0.95685 0.96007 1.01761 1.22152 0.95144 0.97065 0.87074 1.48219 1.36885 1.42098 1.06616 1.20914 0.83781 0.83184 0.81940 1.90715 1.57538 1.52448 1.45728 1.21503 0.98882 1.01145 0.93813 1.22823 0.89207 0.76676 0.94583 1.88012 1.63228 1.54097 1.26839 1.22939 1.01338 0.98011 0.80428 1.22752 0.99751 0.95427 1.04192 1.22855 0.98150 1.01242 0.80846 1.88138 1.85220 1.34355 1.25142 1.21743 0.88392 0.91907 0.98712 1.21746 0.89599 0.91146 0.94671 0.91429 0.92735 0.94910 0.91727 0.86065 0.92998 0.88835 0.86692 0.90112 0.85567 0.85268 0.83244 0.93432 0.85727 0.92250 0.87179 0.90127 0.93217 0.87729 0.93431 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.97 21.65 0.30 -60.11 16 2 C -0.03 -1.68 5.26 84.86 0.45 -1.23 16 3 Si 0.94 47.69 24.31 68.60 1.67 49.36 16 4 H -0.26 -12.09 6.58 99.48 0.65 -11.43 16 5 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.27 -13.78 6.57 99.48 0.65 -13.13 16 7 C -0.25 -14.32 10.16 84.03 0.85 -13.47 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.61 -29.24 2.50 -672.38 -1.68 -30.92 16 10 C 0.08 3.42 3.86 86.33 0.33 3.75 16 11 C 0.06 1.90 6.97 72.06 0.50 2.40 16 12 O -0.38 -11.53 9.59 -148.98 -1.43 -12.96 16 13 C 0.08 2.53 2.73 30.50 0.08 2.61 16 14 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 15 C -0.12 -2.25 5.84 30.63 0.18 -2.07 16 16 C 0.11 2.02 6.20 86.49 0.54 2.55 16 17 N -0.61 -17.74 2.95 -818.10 -2.42 -20.16 16 18 C 0.51 15.79 7.58 87.66 0.66 16.45 16 19 O -0.58 -24.28 14.83 10.71 0.16 -24.12 16 20 C -0.11 -2.33 4.13 29.85 0.12 -2.21 16 21 C 0.26 6.31 2.80 71.98 0.20 6.52 16 22 O -0.40 -8.01 10.54 -126.22 -1.33 -9.34 16 23 C 0.05 0.68 6.96 72.07 0.50 1.18 16 24 C -0.18 -2.47 6.35 30.77 0.20 -2.28 16 25 C 0.05 0.91 6.97 72.07 0.50 1.41 16 26 O -0.41 -11.35 9.77 -120.76 -1.18 -12.53 16 27 C 0.12 4.58 5.62 86.43 0.49 5.07 16 28 C 0.14 5.35 3.00 44.95 0.13 5.48 16 29 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 30 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.03 1.40 5.95 -2.38 -0.01 1.38 16 32 H 0.06 2.94 4.58 -2.39 -0.01 2.93 16 33 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.56 7.94 -2.38 -0.02 1.54 16 38 H 0.13 1.34 5.94 -2.39 -0.01 1.32 16 39 H 0.13 2.14 7.92 -2.39 -0.02 2.13 16 40 H 0.15 1.99 7.72 -2.39 -0.02 1.97 16 41 H 0.05 1.28 7.96 -2.38 -0.02 1.26 16 42 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 2.24 7.00 -2.39 -0.02 2.23 16 49 H 0.06 2.29 6.57 -2.39 -0.02 2.28 16 Total: -1.00 -80.60 368.65 0.68 -79.92 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.84 Total: 14.69 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 5.74 Total: 26.17 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -3.80 Total: -111.19 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -3.78 Total: -58.94 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.67 Total: 49.36 kcal Total: -80.60 0.68 -79.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.575 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds