Wall clock time and date at job start Sat Apr 11 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00293 * 3 2 1 6 6 H 1.48504 * 109.47096 * 59.99581 * 3 2 1 7 7 C 1.38812 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00327 * 196.90338 * 7 2 1 9 9 N 1.36937 * 119.99585 * 16.90622 * 7 2 1 10 10 C 1.47165 * 121.20887 * 26.13266 * 9 7 2 11 11 C 1.53228 * 108.70518 * 129.07366 * 10 9 7 12 12 O 1.43094 * 109.41332 * 51.63146 * 11 10 9 13 13 C 1.42663 * 113.87146 * 298.31770 * 12 11 10 14 14 H 1.09000 * 108.89323 * 304.39117 * 13 12 11 15 15 C 1.52495 * 110.67759 * 185.42035 * 13 12 11 16 16 C 1.52713 * 109.90011 * 298.31650 * 15 13 12 17 17 N 1.46985 * 108.68869 * 305.72489 * 16 15 13 18 18 C 1.34780 * 120.74161 * 234.57951 * 17 16 15 19 19 O 1.21287 * 119.99724 * 179.72097 * 18 17 16 20 20 C 1.50694 * 119.99985 * 359.72268 * 18 17 16 21 21 C 1.53002 * 109.47244 * 180.02562 * 20 18 17 22 22 O 1.42969 * 109.46651 * 294.99943 * 21 20 18 23 23 C 1.43093 * 113.76464 * 181.20330 * 22 21 20 24 24 C 1.53261 * 108.94537 * 57.97069 * 23 22 21 25 25 C 1.53262 * 108.84203 * 305.47571 * 24 23 22 26 26 O 1.42962 * 109.47205 * 174.99552 * 21 20 18 27 27 C 1.46808 * 118.51571 * 54.30565 * 17 16 15 28 28 C 1.47585 * 121.20398 * 206.11589 * 9 7 2 29 29 H 1.09000 * 110.28185 * 353.11485 * 28 9 7 30 30 H 0.96997 * 120.00106 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.59953 * 248.83842 * 10 9 7 32 32 H 1.09000 * 109.59792 * 9.31112 * 10 9 7 33 33 H 1.08994 * 109.48548 * 171.61771 * 11 10 9 34 34 H 1.09004 * 109.47974 * 291.65709 * 11 10 9 35 35 H 1.09000 * 109.41082 * 58.54932 * 15 13 12 36 36 H 1.09002 * 109.41204 * 178.40444 * 15 13 12 37 37 H 1.09005 * 109.55959 * 185.94336 * 16 15 13 38 38 H 1.09002 * 109.48717 * 65.46846 * 16 15 13 39 39 H 1.09002 * 109.46686 * 299.99660 * 20 18 17 40 40 H 1.08996 * 109.47288 * 59.99886 * 20 18 17 41 41 H 1.09000 * 109.47071 * 54.99261 * 21 20 18 42 42 H 1.09000 * 109.56329 * 298.13144 * 23 22 21 43 43 H 1.08997 * 109.55711 * 177.80306 * 23 22 21 44 44 H 1.08995 * 109.57833 * 185.66595 * 24 23 22 45 45 H 1.09009 * 109.57630 * 65.27583 * 24 23 22 46 46 H 1.09000 * 109.55473 * 294.68042 * 25 24 23 47 47 H 1.09000 * 109.55586 * 174.36088 * 25 24 23 48 48 H 1.08997 * 109.52276 * 65.80184 * 27 17 16 49 49 H 1.09006 * 109.52147 * 185.92762 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2222 0.2725 9 7 1.3700 -2.3625 -0.3438 10 6 0.1956 -2.3512 -1.2306 11 6 0.4208 -3.3649 -2.3574 12 8 0.7866 -4.6285 -1.7942 13 6 2.0012 -4.5975 -1.0466 14 1 2.7970 -4.2089 -1.6820 15 6 2.3909 -6.0007 -0.5942 16 6 1.3094 -6.5711 0.3208 17 7 1.0759 -5.6247 1.4209 18 6 1.1636 -6.0254 2.7047 19 8 0.9732 -5.2319 3.6020 20 6 1.4982 -7.4593 3.0253 21 6 1.5342 -7.6476 4.5432 22 8 2.6055 -6.8771 5.0936 23 6 2.7405 -7.0081 6.5121 24 6 2.9546 -8.4859 6.8572 25 6 1.8121 -9.3068 6.2492 26 8 1.7360 -9.0299 4.8474 27 6 0.7511 -4.2317 1.0900 28 6 1.8329 -3.6700 0.1606 29 1 2.7726 -3.5553 0.7009 30 1 -0.4850 0.8400 0.0004 31 1 -0.6935 -2.6266 -0.6634 32 1 0.0674 -1.3554 -1.6549 33 1 -0.4968 -3.4763 -2.9350 34 1 1.2203 -3.0123 -3.0090 35 1 2.5052 -6.6439 -1.4667 36 1 3.3345 -5.9569 -0.0502 37 1 1.6404 -7.5279 0.7247 38 1 0.3886 -6.7082 -0.2463 39 1 0.7395 -8.1140 2.5963 40 1 2.4725 -7.7079 2.6047 41 1 0.5894 -7.3151 4.9731 42 1 1.8350 -6.6470 6.9998 43 1 3.5970 -6.4262 6.8523 44 1 2.9583 -8.6112 7.9400 45 1 3.9059 -8.8230 6.4453 46 1 0.8715 -9.0327 6.7269 47 1 2.0048 -10.3688 6.4014 48 1 -0.2161 -4.1924 0.5889 49 1 0.7118 -3.6398 2.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074222709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:17 Heat of formation + Delta-G solvation = -137.617220 kcal Electronic energy + Delta-G solvation = -31786.699615 eV Core-core repulsion = 27521.936732 eV Total energy + Delta-G solvation = -4264.762884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40672 -39.75618 -38.44001 -35.83509 -35.64754 -34.64145 -33.37864 -31.84092 -31.50175 -30.38736 -29.29993 -27.36293 -26.15777 -25.11274 -23.99496 -23.32338 -22.58825 -21.45776 -21.29770 -19.36909 -18.24319 -17.72524 -16.97891 -16.87629 -16.52525 -16.03407 -15.52734 -15.42570 -15.24862 -15.01875 -14.91664 -14.83820 -14.42657 -14.13357 -13.72959 -13.45610 -13.36956 -13.13309 -13.02593 -12.67492 -12.42221 -12.29331 -12.09833 -11.85965 -11.73826 -11.32091 -11.28327 -11.26776 -11.05676 -10.90728 -10.74963 -10.56830 -10.22012 -10.18079 -10.16016 -9.98154 -9.78633 -9.61715 -9.44524 -8.98993 -8.58428 -8.19694 -6.75027 -5.85239 -3.28640 2.91896 3.00720 3.34654 3.42745 3.44916 3.55431 3.65909 4.33576 4.42533 4.47520 4.49260 4.65655 4.75598 4.84731 4.94161 5.06976 5.09125 5.18167 5.18744 5.30807 5.34147 5.36685 5.46363 5.49518 5.54824 5.61680 5.67407 5.78674 5.80031 5.82134 6.04004 6.06721 6.10887 6.17858 6.32789 6.36607 6.45131 6.66494 6.70917 6.78771 6.98444 7.05855 7.10068 7.48957 7.72620 7.78216 7.89776 8.31095 8.50745 9.09895 9.71502 10.28694 11.22401 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003126 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.732836 B = 8953.789607 C =10277.110411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.585 5.585 10 C 0.137 3.863 11 C 0.039 3.961 12 O -0.387 6.387 13 C 0.082 3.918 14 H 0.051 0.949 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.606 5.606 18 C 0.517 3.483 19 O -0.533 6.533 20 C -0.126 4.126 21 C 0.264 3.736 22 O -0.375 6.375 23 C 0.058 3.942 24 C -0.193 4.193 25 C 0.059 3.941 26 O -0.397 6.397 27 C 0.107 3.893 28 C 0.134 3.866 29 H 0.075 0.925 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -19.365 5.664 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.306 6.306 13 C 0.023 3.977 14 H 0.069 0.931 15 C -0.163 4.163 16 C -0.012 4.012 17 N -0.340 5.340 18 C 0.303 3.697 19 O -0.409 6.409 20 C -0.166 4.166 21 C 0.169 3.831 22 O -0.295 6.295 23 C -0.019 4.019 24 C -0.231 4.231 25 C -0.017 4.017 26 O -0.318 6.318 27 C -0.017 4.017 28 C 0.026 3.974 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.116 0.884 48 H 0.086 0.914 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.945 -18.913 5.859 20.017 hybrid contribution 0.345 1.164 0.401 1.279 sum 3.290 -17.748 6.260 19.105 Atomic orbital electron populations 1.70028 1.05248 1.25616 1.53508 1.25052 0.95346 0.98487 1.00542 0.86178 0.79362 0.83672 0.77299 1.20194 1.21510 1.21606 1.19221 0.92626 0.84186 1.42255 0.91275 1.44319 1.33627 1.00709 1.52060 1.21468 0.89038 0.98612 0.89708 1.23332 0.98861 0.84915 0.96721 1.87709 1.41429 1.31997 1.69507 1.22161 0.87137 0.94656 0.93793 0.93101 1.21738 0.98714 0.96309 0.99503 1.21585 0.99560 0.91690 0.88379 1.48253 1.69273 1.11704 1.04781 1.20074 0.77530 0.89325 0.82729 1.90729 1.49761 1.55025 1.45414 1.21497 1.05501 0.96048 0.93578 1.22901 0.90162 0.76692 0.93368 1.88209 1.53216 1.67079 1.20953 1.22612 1.02315 0.95073 0.81920 1.22818 1.00775 0.97398 1.02142 1.22620 0.97303 1.00494 0.81287 1.88044 1.93303 1.26441 1.23992 1.22315 0.99673 0.78981 1.00690 1.21593 0.96708 0.87033 0.92114 0.90704 0.93516 0.95339 0.88622 0.90139 0.94108 0.90349 0.90421 0.90309 0.90549 0.86931 0.87402 0.91786 0.92761 0.88347 0.89822 0.90036 0.92806 0.88355 0.91418 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.14 55.49 0.62 -25.10 16 2 C 0.00 0.13 4.96 -17.43 -0.09 0.04 16 3 Si 0.91 21.62 29.59 -169.99 -5.03 16.59 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.89 9.69 -15.06 -0.15 -7.03 16 8 H 0.07 1.87 7.88 -52.49 -0.41 1.45 16 9 N -0.58 -14.37 2.71 -163.91 -0.44 -14.81 16 10 C 0.14 3.19 4.94 -3.56 -0.02 3.18 16 11 C 0.04 0.75 6.98 37.28 0.26 1.01 16 12 O -0.39 -7.12 9.63 -35.23 -0.34 -7.46 16 13 C 0.08 1.44 2.71 -26.90 -0.07 1.37 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.50 16 15 C -0.12 -1.64 5.80 -27.14 -0.16 -1.79 16 16 C 0.11 1.41 6.15 -3.93 -0.02 1.39 16 17 N -0.61 -10.02 2.97 -173.04 -0.51 -10.53 16 18 C 0.52 8.66 7.58 -10.99 -0.08 8.58 16 19 O -0.53 -11.19 14.84 -8.86 -0.13 -11.32 16 20 C -0.13 -1.57 4.13 -27.88 -0.12 -1.68 16 21 C 0.26 3.50 2.80 37.16 0.10 3.60 16 22 O -0.37 -5.55 9.77 -64.76 -0.63 -6.18 16 23 C 0.06 0.63 6.96 37.29 0.26 0.89 16 24 C -0.19 -1.60 6.35 -26.46 -0.17 -1.76 16 25 C 0.06 0.51 6.96 37.29 0.26 0.77 16 26 O -0.40 -4.66 10.54 -59.03 -0.62 -5.28 16 27 C 0.11 2.20 5.63 -3.72 -0.02 2.18 16 28 C 0.13 2.81 3.02 -67.10 -0.20 2.60 16 29 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 32 H 0.10 2.46 6.12 -51.93 -0.32 2.14 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 38 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 39 H 0.11 1.10 7.94 -51.93 -0.41 0.69 16 40 H 0.11 1.21 7.70 -51.93 -0.40 0.81 16 41 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 1.48 6.59 -51.93 -0.34 1.14 16 49 H 0.09 2.15 7.00 -51.93 -0.36 1.78 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -32.87 375.30 -9.61 -42.48 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.96 Total: 2.61 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -0.21 Total: 13.34 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.34 Total: -50.44 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.73 Total: -30.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.87 -9.61 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.141 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds