Wall clock time and date at job start Sat Apr 11 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47172 * 300.00293 * 3 2 1 6 6 H 1.48504 * 109.47096 * 59.99581 * 3 2 1 7 7 C 1.38812 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00327 * 196.90338 * 7 2 1 9 9 N 1.36937 * 119.99585 * 16.90622 * 7 2 1 10 10 C 1.47165 * 121.20887 * 26.13266 * 9 7 2 11 11 C 1.53228 * 108.70518 * 129.07366 * 10 9 7 12 12 O 1.43094 * 109.41332 * 51.63146 * 11 10 9 13 13 C 1.42663 * 113.87146 * 298.31770 * 12 11 10 14 14 H 1.09000 * 108.89323 * 304.39117 * 13 12 11 15 15 C 1.52495 * 110.67759 * 185.42035 * 13 12 11 16 16 C 1.52713 * 109.90011 * 298.31650 * 15 13 12 17 17 N 1.46985 * 108.68869 * 305.72489 * 16 15 13 18 18 C 1.34780 * 120.74161 * 234.57951 * 17 16 15 19 19 O 1.21287 * 119.99724 * 179.72097 * 18 17 16 20 20 C 1.50694 * 119.99985 * 359.72268 * 18 17 16 21 21 C 1.53002 * 109.47244 * 180.02562 * 20 18 17 22 22 O 1.42969 * 109.46651 * 294.99943 * 21 20 18 23 23 C 1.43093 * 113.76464 * 181.20330 * 22 21 20 24 24 C 1.53261 * 108.94537 * 57.97069 * 23 22 21 25 25 C 1.53262 * 108.84203 * 305.47571 * 24 23 22 26 26 O 1.42962 * 109.47205 * 174.99552 * 21 20 18 27 27 C 1.46808 * 118.51571 * 54.30565 * 17 16 15 28 28 C 1.47585 * 121.20398 * 206.11589 * 9 7 2 29 29 H 1.09000 * 110.28185 * 353.11485 * 28 9 7 30 30 H 0.96997 * 120.00106 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.59953 * 248.83842 * 10 9 7 32 32 H 1.09000 * 109.59792 * 9.31112 * 10 9 7 33 33 H 1.08994 * 109.48548 * 171.61771 * 11 10 9 34 34 H 1.09004 * 109.47974 * 291.65709 * 11 10 9 35 35 H 1.09000 * 109.41082 * 58.54932 * 15 13 12 36 36 H 1.09002 * 109.41204 * 178.40444 * 15 13 12 37 37 H 1.09005 * 109.55959 * 185.94336 * 16 15 13 38 38 H 1.09002 * 109.48717 * 65.46846 * 16 15 13 39 39 H 1.09002 * 109.46686 * 299.99660 * 20 18 17 40 40 H 1.08996 * 109.47288 * 59.99886 * 20 18 17 41 41 H 1.09000 * 109.47071 * 54.99261 * 21 20 18 42 42 H 1.09000 * 109.56329 * 298.13144 * 23 22 21 43 43 H 1.08997 * 109.55711 * 177.80306 * 23 22 21 44 44 H 1.08995 * 109.57833 * 185.66595 * 24 23 22 45 45 H 1.09009 * 109.57630 * 65.27583 * 24 23 22 46 46 H 1.09000 * 109.55473 * 294.68042 * 25 24 23 47 47 H 1.09000 * 109.55586 * 174.36088 * 25 24 23 48 48 H 1.08997 * 109.52276 * 65.80184 * 27 17 16 49 49 H 1.09006 * 109.52147 * 185.92762 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2222 0.2725 9 7 1.3700 -2.3625 -0.3438 10 6 0.1956 -2.3512 -1.2306 11 6 0.4208 -3.3649 -2.3574 12 8 0.7866 -4.6285 -1.7942 13 6 2.0012 -4.5975 -1.0466 14 1 2.7970 -4.2089 -1.6820 15 6 2.3909 -6.0007 -0.5942 16 6 1.3094 -6.5711 0.3208 17 7 1.0759 -5.6247 1.4209 18 6 1.1636 -6.0254 2.7047 19 8 0.9732 -5.2319 3.6020 20 6 1.4982 -7.4593 3.0253 21 6 1.5342 -7.6476 4.5432 22 8 2.6055 -6.8771 5.0936 23 6 2.7405 -7.0081 6.5121 24 6 2.9546 -8.4859 6.8572 25 6 1.8121 -9.3068 6.2492 26 8 1.7360 -9.0299 4.8474 27 6 0.7511 -4.2317 1.0900 28 6 1.8329 -3.6700 0.1606 29 1 2.7726 -3.5553 0.7009 30 1 -0.4850 0.8400 0.0004 31 1 -0.6935 -2.6266 -0.6634 32 1 0.0674 -1.3554 -1.6549 33 1 -0.4968 -3.4763 -2.9350 34 1 1.2203 -3.0123 -3.0090 35 1 2.5052 -6.6439 -1.4667 36 1 3.3345 -5.9569 -0.0502 37 1 1.6404 -7.5279 0.7247 38 1 0.3886 -6.7082 -0.2463 39 1 0.7395 -8.1140 2.5963 40 1 2.4725 -7.7079 2.6047 41 1 0.5894 -7.3151 4.9731 42 1 1.8350 -6.6470 6.9998 43 1 3.5970 -6.4262 6.8523 44 1 2.9583 -8.6112 7.9400 45 1 3.9059 -8.8230 6.4453 46 1 0.8715 -9.0327 6.7269 47 1 2.0048 -10.3688 6.4014 48 1 -0.2161 -4.1924 0.5889 49 1 0.7118 -3.6398 2.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074222709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:16 Heat of formation + Delta-G solvation = -160.293316 kcal Electronic energy + Delta-G solvation = -31787.682925 eV Core-core repulsion = 27521.936732 eV Total energy + Delta-G solvation = -4265.746193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64594 -40.89043 -39.86609 -37.15610 -36.66139 -36.45278 -34.29888 -33.49185 -33.06422 -31.61702 -30.69565 -29.16962 -26.93573 -26.48077 -25.63933 -24.72229 -24.02721 -22.89754 -22.12622 -20.85598 -19.65228 -18.95404 -18.69468 -18.00905 -17.48227 -17.22787 -17.03849 -16.92885 -16.59517 -16.45518 -16.15003 -15.84230 -15.71832 -15.55824 -15.28266 -14.86126 -14.62682 -14.36640 -14.29000 -14.04319 -13.77539 -13.72621 -13.38617 -13.10933 -13.07081 -12.85499 -12.59165 -12.45414 -12.41899 -12.24388 -12.12294 -12.08503 -12.02346 -11.85393 -11.65695 -11.20708 -11.00009 -10.84360 -10.76698 -10.67874 -10.52039 -9.67709 -8.71870 -7.94092 -5.41056 1.41857 1.43829 1.54471 1.62629 1.82957 2.44025 2.65634 2.65801 2.90733 3.20373 3.45566 3.55412 3.76642 3.78534 3.81525 3.87875 4.00327 4.07555 4.15654 4.21730 4.23125 4.30251 4.39975 4.43892 4.45040 4.50003 4.54677 4.58325 4.65039 4.70307 4.82250 4.83963 4.85162 4.88225 4.92474 5.00278 5.07098 5.11177 5.24407 5.32281 5.48437 5.56872 5.59539 5.83170 6.15806 6.25312 6.35939 6.48576 7.03206 7.18742 7.70234 8.24218 9.10897 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003126 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.732836 B = 8953.789607 C =10277.110411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.603 5.603 10 C 0.144 3.856 11 C 0.053 3.947 12 O -0.380 6.380 13 C 0.086 3.914 14 H 0.049 0.951 15 C -0.117 4.117 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.511 3.489 19 O -0.586 6.586 20 C -0.114 4.114 21 C 0.263 3.737 22 O -0.407 6.407 23 C 0.044 3.956 24 C -0.183 4.183 25 C 0.049 3.951 26 O -0.401 6.401 27 C 0.126 3.874 28 C 0.131 3.869 29 H 0.059 0.941 30 H 0.252 0.748 31 H 0.001 0.999 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.148 0.852 40 H 0.130 0.870 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.125 0.875 48 H 0.050 0.950 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -22.811 4.892 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.299 6.299 13 C 0.027 3.973 14 H 0.067 0.933 15 C -0.156 4.156 16 C -0.014 4.014 17 N -0.338 5.338 18 C 0.300 3.700 19 O -0.466 6.466 20 C -0.153 4.153 21 C 0.168 3.832 22 O -0.328 6.328 23 C -0.032 4.032 24 C -0.221 4.221 25 C -0.027 4.027 26 O -0.322 6.322 27 C 0.001 3.999 28 C 0.024 3.976 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.165 0.835 40 H 0.148 0.852 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.143 0.857 48 H 0.068 0.932 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.359 -22.428 5.066 23.403 hybrid contribution -0.091 2.208 0.753 2.334 sum 4.268 -20.220 5.819 21.470 Atomic orbital electron populations 1.70179 1.06581 1.25990 1.54902 1.25797 0.96117 1.01486 1.00824 0.85183 0.78565 0.79641 0.76890 1.19175 1.20999 1.22190 1.19486 0.92733 0.85623 1.41712 0.91721 1.44551 1.33744 1.01450 1.52911 1.21306 0.87802 0.98531 0.90474 1.23159 1.00468 0.83978 0.94921 1.87728 1.41877 1.31061 1.69275 1.22206 0.86705 0.96751 0.91645 0.93339 1.21797 0.99097 0.93604 1.01063 1.21950 0.99876 0.92387 0.87231 1.48284 1.68905 1.10406 1.06205 1.20931 0.76151 0.90951 0.81917 1.90709 1.51966 1.56942 1.46995 1.21501 1.07610 0.92668 0.93549 1.22806 0.89257 0.77453 0.93707 1.88163 1.53712 1.68013 1.22909 1.22856 1.02423 0.97464 0.80435 1.22758 1.00521 0.94957 1.03842 1.22945 0.97802 1.02083 0.79875 1.88012 1.93285 1.24969 1.25913 1.21694 0.98802 0.81452 0.97988 1.21742 0.95619 0.86451 0.93832 0.92257 0.93905 0.98085 0.91492 0.87278 0.93573 0.86700 0.89232 0.85634 0.90187 0.83452 0.85162 0.93416 0.93158 0.87868 0.87110 0.90139 0.92198 0.85682 0.93164 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 11.14 21.65 0.24 -55.47 16 2 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 3 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 7 C -0.27 -15.00 9.69 84.03 0.81 -14.18 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.60 -30.87 2.71 -672.50 -1.83 -32.70 16 10 C 0.14 6.98 4.94 86.33 0.43 7.41 16 11 C 0.05 1.95 6.98 72.06 0.50 2.46 16 12 O -0.38 -13.24 9.63 -148.98 -1.43 -14.67 16 13 C 0.09 2.88 2.71 30.48 0.08 2.97 16 14 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 15 C -0.12 -2.64 5.80 30.33 0.18 -2.46 16 16 C 0.11 2.32 6.15 86.19 0.53 2.85 16 17 N -0.60 -19.58 2.97 -819.77 -2.43 -22.01 16 18 C 0.51 17.00 7.58 87.65 0.66 17.67 16 19 O -0.59 -25.82 14.84 10.73 0.16 -25.66 16 20 C -0.11 -2.54 4.13 29.85 0.12 -2.41 16 21 C 0.26 6.68 2.80 71.98 0.20 6.88 16 22 O -0.41 -11.98 9.77 -120.75 -1.18 -13.16 16 23 C 0.04 0.95 6.96 72.07 0.50 1.45 16 24 C -0.18 -2.63 6.35 30.77 0.20 -2.44 16 25 C 0.05 0.72 6.96 72.07 0.50 1.22 16 26 O -0.40 -8.40 10.54 -126.22 -1.33 -9.73 16 27 C 0.13 5.43 5.63 86.42 0.49 5.92 16 28 C 0.13 5.63 3.02 44.94 0.14 5.77 16 29 H 0.06 2.68 7.99 -2.39 -0.02 2.67 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 31 H 0.00 0.06 7.18 -2.39 -0.02 0.04 16 32 H 0.07 3.61 6.12 -2.39 -0.01 3.59 16 33 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 1.64 5.95 -2.38 -0.01 1.62 16 38 H 0.08 1.76 7.96 -2.39 -0.02 1.74 16 39 H 0.15 2.25 7.94 -2.39 -0.02 2.23 16 40 H 0.13 2.37 7.70 -2.39 -0.02 2.35 16 41 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 2.31 6.59 -2.39 -0.02 2.30 16 49 H 0.04 2.08 7.00 -2.38 -0.02 2.06 16 Total: -1.00 -77.88 375.30 0.93 -76.95 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.94 Total: 17.78 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 5.76 Total: 30.88 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -4.02 Total: -110.18 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -3.79 Total: -63.23 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.88 0.93 -76.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.341 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds