Wall clock time and date at job start Sat Apr 11 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46946 * 269.99911 * 3 2 1 5 5 H 1.48497 * 109.47049 * 29.99772 * 3 2 1 6 6 H 1.48497 * 109.46975 * 150.00043 * 3 2 1 7 7 C 1.38812 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00128 * 164.72170 * 7 2 1 9 9 N 1.36936 * 119.99669 * 344.72596 * 7 2 1 10 10 C 1.47346 * 121.30766 * 332.53655 * 9 7 2 11 11 C 1.53196 * 108.80590 * 230.23229 * 10 9 7 12 12 O 1.43141 * 109.74119 * 308.79462 * 11 10 9 13 13 C 1.42600 * 113.62513 * 61.68614 * 12 11 10 14 14 H 1.08999 * 109.34456 * 55.57419 * 13 12 11 15 15 C 1.52786 * 111.11889 * 176.35786 * 13 12 11 16 16 C 1.53369 * 108.81950 * 182.54715 * 15 13 12 17 17 N 1.46844 * 109.23953 * 306.16195 * 16 15 13 18 18 C 1.34776 * 120.40827 * 232.25145 * 17 16 15 19 19 O 1.21277 * 120.00320 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.99539 * 359.73222 * 18 17 16 21 21 C 1.53004 * 109.46818 * 180.27018 * 20 18 17 22 22 O 1.42963 * 109.47406 * 295.00175 * 21 20 18 23 23 C 1.43093 * 113.77385 * 181.20658 * 22 21 20 24 24 C 1.53259 * 108.94004 * 57.96434 * 23 22 21 25 25 C 1.53253 * 108.84970 * 305.47650 * 24 23 22 26 26 O 1.42964 * 109.47425 * 174.99760 * 21 20 18 27 27 C 1.47132 * 119.18386 * 52.53182 * 17 16 15 28 28 C 1.46876 * 121.30198 * 152.53094 * 9 7 2 29 29 H 1.09000 * 109.66251 * 247.65456 * 28 9 7 30 30 H 0.97004 * 119.99673 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58159 * 110.43369 * 10 9 7 32 32 H 1.08998 * 109.69036 * 350.09663 * 10 9 7 33 33 H 1.09007 * 109.42404 * 188.71124 * 11 10 9 34 34 H 1.08995 * 109.37798 * 68.85080 * 11 10 9 35 35 H 1.09007 * 109.57690 * 62.74951 * 15 13 12 36 36 H 1.09001 * 109.58196 * 302.34872 * 15 13 12 37 37 H 1.08993 * 109.50787 * 186.23042 * 16 15 13 38 38 H 1.09000 * 109.54147 * 66.11328 * 16 15 13 39 39 H 1.08998 * 109.47230 * 300.26690 * 20 18 17 40 40 H 1.08997 * 109.47636 * 60.27466 * 20 18 17 41 41 H 1.09003 * 109.47126 * 55.00116 * 21 20 18 42 42 H 1.08993 * 109.55780 * 298.13020 * 23 22 21 43 43 H 1.09003 * 109.64953 * 177.85872 * 23 22 21 44 44 H 1.09005 * 109.57133 * 185.66932 * 24 23 22 45 45 H 1.09001 * 109.57641 * 65.29053 * 24 23 22 46 46 H 1.09000 * 109.56399 * 294.69390 * 25 24 23 47 47 H 1.08996 * 109.56232 * 174.36372 * 25 24 23 48 48 H 1.08997 * 109.72749 * 66.15316 * 27 17 16 49 49 H 1.09002 * 109.72595 * 186.83050 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0617 -1.2187 -0.2459 9 7 1.3619 -2.3669 0.3135 10 6 0.1816 -2.3730 1.1954 11 6 0.3868 -3.4272 2.2879 12 8 0.7508 -4.6766 1.6918 13 6 1.9753 -4.6268 0.9628 14 1 2.7691 -4.2620 1.6147 15 6 2.3542 -6.0069 0.4279 16 6 3.7058 -5.9055 -0.2898 17 7 3.6363 -4.8467 -1.3049 18 6 3.9961 -5.0987 -2.5791 19 8 3.9354 -4.2189 -3.4117 20 6 4.4789 -6.4722 -2.9681 21 6 4.8265 -6.4876 -4.4581 22 8 3.6403 -6.2720 -5.2264 23 6 3.8568 -6.2959 -6.6407 24 6 4.4682 -7.6470 -7.0275 25 6 5.7290 -7.8786 -6.1876 26 8 5.3935 -7.7540 -4.8022 27 6 3.1751 -3.5058 -0.9126 28 6 1.8158 -3.6592 -0.2169 29 1 1.0748 -4.0501 -0.9143 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7075 -2.6176 0.6140 32 1 0.0600 -1.3913 1.6531 33 1 -0.5382 -3.5501 2.8513 34 1 1.1803 -3.1014 2.9603 35 1 1.5928 -6.3484 -0.2735 36 1 2.4325 -6.7109 1.2564 37 1 3.9348 -6.8564 -0.7706 38 1 4.4855 -5.6660 0.4333 39 1 5.3651 -6.7243 -2.3857 40 1 3.6944 -7.2027 -2.7706 41 1 5.5462 -5.6973 -4.6714 42 1 4.5397 -5.4934 -6.9189 43 1 2.9072 -6.1632 -7.1591 44 1 4.7304 -7.6396 -8.0855 45 1 3.7488 -8.4425 -6.8332 46 1 6.4829 -7.1358 -6.4486 47 1 6.1175 -8.8785 -6.3806 48 1 3.8935 -3.0554 -0.2277 49 1 3.0680 -2.8797 -1.7985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074222710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:22 Heat of formation + Delta-G solvation = -137.430465 kcal Electronic energy + Delta-G solvation = -31675.750586 eV Core-core repulsion = 27410.995801 eV Total energy + Delta-G solvation = -4264.754785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45465 -39.74575 -38.46374 -36.06445 -35.75866 -34.69317 -33.41674 -31.89918 -31.36989 -30.45115 -29.56528 -27.05935 -26.17753 -25.33602 -23.91807 -23.60209 -21.96590 -21.44611 -21.16797 -19.68290 -18.84420 -17.78508 -17.03262 -16.83171 -16.48024 -16.22805 -15.48313 -15.41299 -15.23510 -15.08080 -14.93032 -14.83453 -14.42159 -13.92836 -13.78945 -13.47674 -13.41852 -13.08277 -13.03198 -12.84754 -12.61436 -12.51232 -12.11375 -11.81809 -11.74797 -11.33696 -11.29175 -11.28446 -10.99825 -10.92431 -10.80895 -10.57726 -10.24124 -10.23084 -10.20039 -9.96984 -9.81336 -9.61100 -9.54122 -8.97268 -8.52388 -8.33093 -6.71371 -5.82667 -3.27860 2.81876 2.91320 3.36601 3.43351 3.44419 3.52179 3.56782 4.25867 4.44212 4.46023 4.47859 4.59473 4.70478 4.81992 4.87883 4.98184 5.06859 5.16036 5.21490 5.28624 5.31378 5.38040 5.42111 5.46253 5.50569 5.56576 5.61223 5.71836 5.76894 5.78111 5.90560 5.96609 6.11855 6.16465 6.27154 6.34458 6.48390 6.63893 6.66722 6.72568 6.89708 7.03169 7.14419 7.51800 7.61546 7.72681 7.90633 8.33506 8.39288 9.11286 9.74764 10.32687 11.25539 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003205 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.025851 B = 8734.790821 C =10048.295598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.143 3.857 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.077 3.923 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.612 5.612 18 C 0.520 3.480 19 O -0.527 6.527 20 C -0.127 4.127 21 C 0.264 3.736 22 O -0.375 6.375 23 C 0.058 3.942 24 C -0.194 4.194 25 C 0.060 3.940 26 O -0.397 6.397 27 C 0.126 3.874 28 C 0.137 3.863 29 H 0.038 0.962 30 H 0.255 0.745 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.390 -17.095 -5.923 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.313 5.313 10 C 0.017 3.983 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.163 4.163 16 C -0.013 4.013 17 N -0.346 5.346 18 C 0.306 3.694 19 O -0.403 6.403 20 C -0.167 4.167 21 C 0.169 3.831 22 O -0.295 6.295 23 C -0.019 4.019 24 C -0.231 4.231 25 C -0.017 4.017 26 O -0.318 6.318 27 C 0.004 3.996 28 C 0.029 3.971 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.117 0.883 48 H 0.090 0.910 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.985 -16.704 -6.137 20.406 hybrid contribution 0.550 1.229 -0.323 1.384 sum 10.535 -15.476 -6.460 19.805 Atomic orbital electron populations 1.70022 1.05289 1.25642 1.53560 1.25077 0.95325 0.98452 1.00429 0.86285 0.79090 0.83487 0.77871 1.21208 1.21518 1.20401 1.19120 0.92201 0.84058 1.43296 0.91071 1.44035 1.33237 1.01000 1.53014 1.21426 0.88917 0.97864 0.90077 1.23330 0.98900 0.85287 0.96335 1.87738 1.40447 1.33065 1.69589 1.22422 0.86929 0.94932 0.94022 0.93010 1.21849 0.96893 0.97167 1.00438 1.21725 0.97492 0.90954 0.91106 1.48242 1.65552 1.12632 1.08206 1.20077 0.77914 0.89396 0.81967 1.90739 1.53427 1.47091 1.49019 1.21505 1.04485 0.97141 0.93567 1.22890 0.85119 0.84421 0.90717 1.88212 1.32758 1.91582 1.16909 1.22611 1.02047 0.95299 0.81952 1.22818 0.99326 0.99901 1.01104 1.22622 0.95525 1.02656 0.80877 1.88041 1.80921 1.37166 1.25647 1.21846 0.95053 0.81490 1.01199 1.21412 0.94128 0.88559 0.93038 0.94478 0.93508 0.95440 0.88719 0.90082 0.94129 0.90755 0.90219 0.89488 0.91075 0.86806 0.87231 0.91751 0.92756 0.88301 0.89797 0.90008 0.92793 0.88331 0.90966 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.15 55.49 0.62 -25.42 16 2 C 0.01 0.17 4.99 -17.43 -0.09 0.09 16 3 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.93 8.88 -15.06 -0.13 -7.07 16 8 H 0.07 1.86 6.27 -52.49 -0.33 1.53 16 9 N -0.59 -14.74 3.04 -164.07 -0.50 -15.24 16 10 C 0.14 3.43 5.42 -3.48 -0.02 3.41 16 11 C 0.04 0.78 6.95 37.26 0.26 1.03 16 12 O -0.39 -7.69 10.49 -35.23 -0.37 -8.06 16 13 C 0.08 1.39 2.47 -26.63 -0.07 1.32 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 15 C -0.12 -1.70 5.82 -26.65 -0.16 -1.86 16 16 C 0.11 1.29 6.31 -3.66 -0.02 1.26 16 17 N -0.61 -9.60 2.97 -172.40 -0.51 -10.11 16 18 C 0.52 8.35 7.57 -10.98 -0.08 8.27 16 19 O -0.53 -10.69 14.82 -8.86 -0.13 -10.82 16 20 C -0.13 -1.50 4.12 -27.88 -0.11 -1.62 16 21 C 0.26 3.39 2.80 37.16 0.10 3.49 16 22 O -0.37 -5.49 9.77 -64.76 -0.63 -6.12 16 23 C 0.06 0.62 6.96 37.29 0.26 0.88 16 24 C -0.19 -1.57 6.35 -26.47 -0.17 -1.74 16 25 C 0.06 0.50 6.96 37.29 0.26 0.76 16 26 O -0.40 -4.52 10.54 -59.03 -0.62 -5.14 16 27 C 0.13 2.47 4.50 -3.46 -0.02 2.45 16 28 C 0.14 2.93 3.04 -67.27 -0.20 2.73 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.46 6.23 -51.93 -0.32 2.14 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.74 5.91 -51.93 -0.31 0.44 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.01 7.95 -51.93 -0.41 0.60 16 40 H 0.11 1.19 7.66 -51.93 -0.40 0.79 16 41 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.41 7.40 -51.93 -0.38 1.02 16 49 H 0.10 2.35 6.80 -51.93 -0.35 1.99 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -33.69 375.30 -9.68 -43.38 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.97 Total: 1.84 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.19 Total: 13.43 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.39 Total: -50.77 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.76 Total: -30.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.69 -9.68 -43.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074222710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.054 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds