Wall clock time and date at job start Sat Apr 11 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00200 * 2 1 4 4 C 1.52997 * 109.47019 * 264.42807 * 3 2 1 5 5 H 1.08999 * 112.97135 * 311.07558 * 4 3 2 6 6 C 1.53948 * 113.77135 * 179.39212 * 4 3 2 7 7 C 1.53944 * 86.29175 * 222.09489 * 6 4 3 8 8 N 1.47583 * 113.76675 * 82.75064 * 4 3 2 9 9 C 1.36938 * 134.49400 * 318.93477 * 8 4 3 10 10 H 1.08000 * 119.99763 * 2.22326 * 9 8 4 11 11 C 1.38808 * 120.00030 * 182.21976 * 9 8 4 12 12 N 1.31620 * 120.00357 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99952 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47061 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47062 * 120.00216 * 13 11 9 16 16 H 1.48497 * 109.47116 * 240.00109 * 13 11 9 17 17 C 1.34780 * 119.99486 * 179.97438 * 2 1 3 18 18 O 1.21628 * 119.99644 * 185.32340 * 17 2 1 19 19 C 1.47304 * 120.00350 * 5.32952 * 17 2 1 20 20 C 1.36444 * 126.19262 * 175.52143 * 19 17 2 21 21 N 1.36138 * 106.76850 * 179.97438 * 20 19 17 22 22 C 1.40207 * 126.22185 * 179.97438 * 21 20 19 23 23 C 1.38827 * 120.06872 * 179.97438 * 22 21 20 24 24 C 1.38121 * 119.93592 * 179.69840 * 23 22 21 25 25 C 1.38278 * 120.06647 * 0.27372 * 24 23 22 26 26 C 1.38277 * 120.12899 * 359.97438 * 25 24 23 27 27 C 1.38127 * 120.06733 * 0.02562 * 26 25 24 28 28 C 1.36115 * 107.56088 * 0.22204 * 21 20 19 29 29 N 1.30154 * 109.00532 * 359.62411 * 28 21 20 30 30 H 1.08994 * 109.47608 * 236.25790 * 1 2 3 31 31 H 1.09001 * 109.46793 * 356.26126 * 1 2 3 32 32 H 1.08997 * 109.46549 * 116.25895 * 1 2 3 33 33 H 1.08998 * 109.47402 * 24.43172 * 3 2 1 34 34 H 1.08997 * 109.47099 * 144.43443 * 3 2 1 35 35 H 1.08995 * 113.74083 * 336.44239 * 6 4 3 36 36 H 1.08996 * 113.73813 * 107.64353 * 6 4 3 37 37 H 1.09004 * 113.77191 * 137.90672 * 7 6 4 38 38 H 1.08995 * 113.77210 * 269.19439 * 7 6 4 39 39 H 0.96999 * 120.00327 * 180.02562 * 12 11 9 40 40 H 1.07999 * 126.61745 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.03010 * 359.96709 * 23 22 21 42 42 H 1.07999 * 119.96473 * 180.25498 * 24 23 22 43 43 H 1.07997 * 119.93366 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.96743 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.02924 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.49397 * 179.73734 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5738 1.6403 -1.4357 5 1 3.0381 0.8180 -1.9801 6 6 3.3382 2.9715 -1.5521 7 6 2.4534 3.2571 -2.7790 8 7 1.4897 2.3096 -2.1804 9 6 0.1361 2.1262 -2.2766 10 1 -0.3479 1.3594 -1.6900 11 6 -0.6140 2.9259 -3.1279 12 7 -0.0241 3.8601 -3.8432 13 14 -2.4604 2.6752 -3.2596 14 1 -2.8752 1.5693 -2.3595 15 1 -3.1590 3.9241 -2.8630 16 1 -2.8148 2.3332 -4.6605 17 6 2.1388 -1.1673 0.0005 18 8 3.3512 -1.1696 0.0983 19 6 1.4070 -2.4403 -0.1174 20 6 1.9623 -3.6827 -0.2163 21 7 0.9316 -4.5677 -0.3043 22 6 1.0432 -5.9603 -0.4220 23 6 -0.0990 -6.7453 -0.5023 24 6 0.0141 -8.1165 -0.6244 25 6 1.2635 -8.7080 -0.6610 26 6 2.4029 -7.9292 -0.5761 27 6 2.2961 -6.5575 -0.4538 28 6 -0.2269 -3.8543 -0.2630 29 7 0.0580 -2.5897 -0.1467 30 1 -0.3634 -0.5708 0.8545 31 1 -0.3633 1.0255 0.0670 32 1 -0.3632 -0.4547 -0.9216 33 1 1.5690 2.0512 0.4250 34 1 3.1031 1.1653 0.5977 35 1 3.1648 3.6514 -0.7181 36 1 4.3952 2.8512 -1.7896 37 1 2.0892 4.2833 -2.8287 38 1 2.8822 2.9120 -3.7198 39 1 -0.5482 4.4192 -4.4378 40 1 3.0162 -3.9185 -0.2233 41 1 -1.0751 -6.2839 -0.4737 42 1 -0.8741 -8.7272 -0.6911 43 1 1.3495 -9.7803 -0.7562 44 1 3.3774 -8.3939 -0.6053 45 1 3.1864 -5.9497 -0.3879 46 1 -1.2219 -4.2707 -0.3161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085609574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:30 Heat of formation + Delta-G solvation = 134.772977 kcal Electronic energy + Delta-G solvation = -28962.134284 eV Core-core repulsion = 25048.784797 eV Total energy + Delta-G solvation = -3913.349488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60313 -39.66700 -39.04290 -37.55470 -34.92698 -34.31406 -32.12381 -31.76621 -30.06230 -29.82737 -28.32252 -27.60191 -26.01038 -24.16833 -23.83556 -23.20382 -22.58148 -21.30299 -21.01927 -19.42359 -18.97945 -18.26834 -16.85663 -16.66464 -16.05507 -15.96890 -15.89115 -15.27603 -15.06407 -14.86600 -14.65716 -14.42207 -13.99557 -13.83033 -13.74342 -13.56570 -13.19918 -12.94837 -12.75609 -12.32504 -12.22116 -11.89843 -11.64018 -11.33452 -11.25400 -11.00908 -10.92048 -10.85036 -10.63087 -10.41113 -10.20013 -9.96665 -9.58274 -9.57843 -9.47742 -9.16668 -9.04145 -8.68453 -8.61253 -7.96919 -6.73430 -5.65022 -2.95152 0.40031 0.76878 1.75742 2.27042 2.41546 3.27763 3.43764 3.49141 3.50527 3.51952 3.77545 4.13570 4.24341 4.33081 4.46454 4.54189 4.61790 4.75360 4.80571 5.00089 5.18595 5.26743 5.27291 5.37682 5.48305 5.55696 5.76585 5.79979 5.91146 5.93226 5.98857 6.01584 6.08589 6.17158 6.22018 6.26437 6.33411 6.39213 6.57971 6.66479 6.76039 6.83659 6.91365 7.14515 7.39849 7.55866 7.63741 7.71528 7.93115 8.11147 8.60306 9.17096 9.84186 10.76170 11.53084 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002802 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.085508 B = 9990.636060 C =11210.454826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.585 5.585 3 C 0.118 3.882 4 C 0.129 3.871 5 H 0.045 0.955 6 C -0.159 4.159 7 C 0.161 3.839 8 N -0.603 5.603 9 C -0.220 4.220 10 H 0.092 0.908 11 C -0.013 4.013 12 N -0.923 5.923 13 Si 0.902 3.098 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.595 3.405 18 O -0.554 6.554 19 C -0.036 4.036 20 C 0.025 3.975 21 N -0.412 5.412 22 C 0.136 3.864 23 C -0.132 4.132 24 C -0.092 4.092 25 C -0.128 4.128 26 C -0.092 4.092 27 C -0.133 4.133 28 C 0.188 3.812 29 N -0.443 5.443 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.250 0.750 40 H 0.190 0.810 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -23.912 9.270 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.314 5.314 3 C -0.005 4.005 4 C 0.021 3.979 5 H 0.062 0.938 6 C -0.198 4.198 7 C 0.036 3.964 8 N -0.329 5.329 9 C -0.348 4.348 10 H 0.110 0.890 11 C -0.209 4.209 12 N -0.571 5.571 13 Si 0.733 3.267 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.383 3.617 18 O -0.433 6.433 19 C -0.163 4.163 20 C -0.109 4.109 21 N -0.091 5.091 22 C 0.043 3.957 23 C -0.152 4.152 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.110 4.110 27 C -0.152 4.152 28 C -0.094 4.094 29 N -0.161 5.161 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.207 0.793 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.855 -23.160 9.264 25.012 hybrid contribution -0.696 -0.869 -0.567 1.249 sum 1.159 -24.029 8.697 25.580 Atomic orbital electron populations 1.22010 0.78063 1.02397 1.02138 1.47575 1.08000 1.05356 1.70441 1.21983 0.96476 0.83595 0.98440 1.22596 0.89459 0.94277 0.91562 0.93793 1.23769 0.97378 0.97577 1.01095 1.22166 0.86353 0.96261 0.91655 1.46237 1.01062 1.34369 1.51252 1.19473 0.80614 1.14745 1.19939 0.89016 1.24782 0.97692 0.99143 0.99246 1.69844 1.33864 1.23161 1.30245 0.86184 0.85776 0.77354 0.77423 1.20253 1.21907 1.22030 1.16839 0.85888 0.82092 0.76925 1.90751 1.13069 1.87141 1.52361 1.20734 0.90041 0.93728 1.11832 1.22662 0.94412 0.88382 1.05434 1.43116 1.08040 1.04930 1.52972 1.17898 0.95405 0.80414 1.01951 1.20880 0.97101 0.94124 1.03111 1.21056 0.98219 0.93684 0.98134 1.21282 0.92391 1.00470 1.00541 1.21079 0.99360 0.92621 0.97974 1.20990 0.95733 0.95835 1.02685 1.25408 0.91764 0.86878 1.05341 1.70981 1.13321 1.15327 1.16434 0.92405 0.90263 0.91278 0.89755 0.90660 0.90728 0.92991 0.91214 0.95849 0.93982 0.79324 0.84847 0.84853 0.85286 0.84874 0.84855 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 7.27 59.85 0.43 2.21 16 2 N -0.58 -11.32 2.89 -182.90 -0.53 -11.85 16 3 C 0.12 2.31 5.27 -4.05 -0.02 2.29 16 4 C 0.13 2.84 4.50 -66.86 -0.30 2.54 16 5 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -3.20 7.86 -25.79 -0.20 -3.40 16 7 C 0.16 3.96 7.47 -2.85 -0.02 3.94 16 8 N -0.60 -15.70 3.59 -169.72 -0.61 -16.30 16 9 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 10 H 0.09 2.39 3.78 -52.49 -0.20 2.19 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 12 N -0.92 -27.99 11.46 55.49 0.64 -27.35 16 13 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 C 0.60 11.48 7.62 -12.57 -0.10 11.38 16 18 O -0.55 -11.55 16.52 5.25 0.09 -11.47 16 19 C -0.04 -0.60 6.73 -83.09 -0.56 -1.16 16 20 C 0.03 0.34 10.57 -16.29 -0.17 0.17 16 21 N -0.41 -4.67 2.97 -61.91 -0.18 -4.86 16 22 C 0.14 1.24 6.63 -83.59 -0.55 0.68 16 23 C -0.13 -0.94 9.46 -39.41 -0.37 -1.31 16 24 C -0.09 -0.52 10.04 -39.61 -0.40 -0.92 16 25 C -0.13 -0.69 10.04 -39.55 -0.40 -1.09 16 26 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 27 C -0.13 -1.05 9.46 -39.40 -0.37 -1.43 16 28 C 0.19 2.20 11.88 -89.67 -1.07 1.14 16 29 N -0.44 -6.83 7.88 -10.97 -0.09 -6.91 16 30 H 0.06 0.96 7.23 -51.93 -0.38 0.58 16 31 H 0.08 1.51 6.46 -51.93 -0.34 1.18 16 32 H 0.07 1.38 6.76 -51.93 -0.35 1.03 16 33 H 0.08 1.63 7.78 -51.93 -0.40 1.22 16 34 H 0.08 1.38 7.52 -51.93 -0.39 0.99 16 35 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.86 7.28 -51.93 -0.38 1.48 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.19 2.16 7.11 -52.49 -0.37 1.79 16 41 H 0.13 0.70 6.74 -52.49 -0.35 0.35 16 42 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 44 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.13 0.96 6.78 -52.49 -0.36 0.60 16 46 H 0.21 1.57 7.03 -52.49 -0.37 1.20 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -35.55 376.27 -10.76 -46.31 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.98 Total: 2.03 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -4.75 Total: 7.38 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.77 Total: -67.28 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.55 -10.76 -46.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085609574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.082 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds