Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00200 * 2 1 4 4 C 1.52997 * 109.47019 * 264.42807 * 3 2 1 5 5 H 1.08999 * 112.97135 * 311.07558 * 4 3 2 6 6 C 1.53948 * 113.77135 * 179.39212 * 4 3 2 7 7 C 1.53944 * 86.29175 * 222.09489 * 6 4 3 8 8 N 1.47583 * 113.76675 * 82.75064 * 4 3 2 9 9 C 1.36938 * 134.49400 * 318.93477 * 8 4 3 10 10 H 1.08000 * 119.99763 * 2.22326 * 9 8 4 11 11 C 1.38808 * 120.00030 * 182.21976 * 9 8 4 12 12 N 1.31620 * 120.00357 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99952 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47061 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47062 * 120.00216 * 13 11 9 16 16 H 1.48497 * 109.47116 * 240.00109 * 13 11 9 17 17 C 1.34780 * 119.99486 * 179.97438 * 2 1 3 18 18 O 1.21628 * 119.99644 * 185.32340 * 17 2 1 19 19 C 1.47304 * 120.00350 * 5.32952 * 17 2 1 20 20 C 1.36444 * 126.19262 * 175.52143 * 19 17 2 21 21 N 1.36138 * 106.76850 * 179.97438 * 20 19 17 22 22 C 1.40207 * 126.22185 * 179.97438 * 21 20 19 23 23 C 1.38827 * 120.06872 * 179.97438 * 22 21 20 24 24 C 1.38121 * 119.93592 * 179.69840 * 23 22 21 25 25 C 1.38278 * 120.06647 * 0.27372 * 24 23 22 26 26 C 1.38277 * 120.12899 * 359.97438 * 25 24 23 27 27 C 1.38127 * 120.06733 * 0.02562 * 26 25 24 28 28 C 1.36115 * 107.56088 * 0.22204 * 21 20 19 29 29 N 1.30154 * 109.00532 * 359.62411 * 28 21 20 30 30 H 1.08994 * 109.47608 * 236.25790 * 1 2 3 31 31 H 1.09001 * 109.46793 * 356.26126 * 1 2 3 32 32 H 1.08997 * 109.46549 * 116.25895 * 1 2 3 33 33 H 1.08998 * 109.47402 * 24.43172 * 3 2 1 34 34 H 1.08997 * 109.47099 * 144.43443 * 3 2 1 35 35 H 1.08995 * 113.74083 * 336.44239 * 6 4 3 36 36 H 1.08996 * 113.73813 * 107.64353 * 6 4 3 37 37 H 1.09004 * 113.77191 * 137.90672 * 7 6 4 38 38 H 1.08995 * 113.77210 * 269.19439 * 7 6 4 39 39 H 0.96999 * 120.00327 * 180.02562 * 12 11 9 40 40 H 1.07999 * 126.61745 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.03010 * 359.96709 * 23 22 21 42 42 H 1.07999 * 119.96473 * 180.25498 * 24 23 22 43 43 H 1.07997 * 119.93366 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.96743 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.02924 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.49397 * 179.73734 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5738 1.6403 -1.4357 5 1 3.0381 0.8180 -1.9801 6 6 3.3382 2.9715 -1.5521 7 6 2.4534 3.2571 -2.7790 8 7 1.4897 2.3096 -2.1804 9 6 0.1361 2.1262 -2.2766 10 1 -0.3479 1.3594 -1.6900 11 6 -0.6140 2.9259 -3.1279 12 7 -0.0241 3.8601 -3.8432 13 14 -2.4604 2.6752 -3.2596 14 1 -2.8752 1.5693 -2.3595 15 1 -3.1590 3.9241 -2.8630 16 1 -2.8148 2.3332 -4.6605 17 6 2.1388 -1.1673 0.0005 18 8 3.3512 -1.1696 0.0983 19 6 1.4070 -2.4403 -0.1174 20 6 1.9623 -3.6827 -0.2163 21 7 0.9316 -4.5677 -0.3043 22 6 1.0432 -5.9603 -0.4220 23 6 -0.0990 -6.7453 -0.5023 24 6 0.0141 -8.1165 -0.6244 25 6 1.2635 -8.7080 -0.6610 26 6 2.4029 -7.9292 -0.5761 27 6 2.2961 -6.5575 -0.4538 28 6 -0.2269 -3.8543 -0.2630 29 7 0.0580 -2.5897 -0.1467 30 1 -0.3634 -0.5708 0.8545 31 1 -0.3633 1.0255 0.0670 32 1 -0.3632 -0.4547 -0.9216 33 1 1.5690 2.0512 0.4250 34 1 3.1031 1.1653 0.5977 35 1 3.1648 3.6514 -0.7181 36 1 4.3952 2.8512 -1.7896 37 1 2.0892 4.2833 -2.8287 38 1 2.8822 2.9120 -3.7198 39 1 -0.5482 4.4192 -4.4378 40 1 3.0162 -3.9185 -0.2233 41 1 -1.0751 -6.2839 -0.4737 42 1 -0.8741 -8.7272 -0.6911 43 1 1.3495 -9.7803 -0.7562 44 1 3.3774 -8.3939 -0.6053 45 1 3.1864 -5.9497 -0.3879 46 1 -1.2219 -4.2707 -0.3161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085609574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 115.289217 kcal Electronic energy + Delta-G solvation = -28962.979163 eV Core-core repulsion = 25048.784797 eV Total energy + Delta-G solvation = -3914.194367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54888 -40.86231 -39.96007 -39.29946 -36.40568 -35.19497 -34.22934 -32.30352 -31.02647 -30.75872 -30.01116 -29.33851 -27.48824 -25.36033 -25.23070 -24.49878 -23.76098 -22.38716 -21.88534 -20.90035 -20.37543 -19.37168 -18.66938 -17.70466 -17.37484 -16.99837 -16.92099 -16.77214 -16.21670 -15.95403 -15.88644 -15.69820 -15.21820 -15.11199 -14.78195 -14.60361 -14.51640 -14.27771 -13.89526 -13.80320 -13.58740 -13.12508 -13.04930 -12.93691 -12.67143 -12.64717 -12.47967 -12.19182 -12.09050 -11.82043 -11.74951 -11.45500 -11.40285 -11.14846 -10.91643 -10.80731 -10.05839 -10.01236 -9.55695 -9.33036 -8.83604 -7.82209 -5.13722 -0.27090 0.30737 0.73704 1.41571 1.46221 1.46452 1.47222 1.57248 2.11259 2.44358 2.51687 2.76818 3.24449 3.35339 3.45779 3.53648 3.63629 3.88121 3.95084 3.98471 4.11118 4.22835 4.27268 4.34572 4.38073 4.40708 4.46779 4.61287 4.65186 4.70121 4.76017 4.79920 4.92081 4.97414 5.00775 5.03814 5.07335 5.19806 5.36354 5.36683 5.43376 5.50151 5.56368 5.65197 5.74492 5.78082 6.00005 6.11128 6.42789 6.65596 7.00590 7.15416 7.70624 8.66759 9.36444 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002802 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.085508 B = 9990.636060 C =11210.454826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.593 5.593 3 C 0.126 3.874 4 C 0.130 3.870 5 H 0.025 0.975 6 C -0.130 4.130 7 C 0.153 3.847 8 N -0.625 5.625 9 C -0.219 4.219 10 H 0.105 0.895 11 C -0.077 4.077 12 N -0.961 5.961 13 Si 0.965 3.035 14 H -0.256 1.256 15 H -0.293 1.293 16 H -0.301 1.301 17 C 0.591 3.409 18 O -0.579 6.579 19 C -0.077 4.077 20 C 0.037 3.963 21 N -0.403 5.403 22 C 0.101 3.899 23 C -0.134 4.134 24 C -0.095 4.095 25 C -0.123 4.123 26 C -0.098 4.098 27 C -0.146 4.146 28 C 0.199 3.801 29 N -0.476 5.476 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.008 0.992 39 H 0.243 0.757 40 H 0.201 0.799 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -27.241 10.511 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.322 5.322 3 C 0.003 3.997 4 C 0.023 3.977 5 H 0.042 0.958 6 C -0.168 4.168 7 C 0.027 3.973 8 N -0.352 5.352 9 C -0.347 4.347 10 H 0.122 0.878 11 C -0.269 4.269 12 N -0.611 5.611 13 Si 0.794 3.206 14 H -0.180 1.180 15 H -0.220 1.220 16 H -0.229 1.229 17 C 0.380 3.620 18 O -0.460 6.460 19 C -0.203 4.203 20 C -0.100 4.100 21 N -0.080 5.080 22 C 0.010 3.990 23 C -0.154 4.154 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.117 4.117 27 C -0.166 4.166 28 C -0.084 4.084 29 N -0.194 5.194 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.218 0.782 41 H 0.168 0.832 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.150 0.850 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.025 -26.547 10.535 28.579 hybrid contribution -0.380 -0.094 -0.965 1.041 sum 0.645 -26.641 9.570 28.315 Atomic orbital electron populations 1.21835 0.77620 1.01651 1.01969 1.47664 1.08323 1.05454 1.70791 1.21822 0.97239 0.84043 0.96609 1.22656 0.88314 0.94441 0.92296 0.95768 1.23564 0.98133 0.96134 0.99001 1.22127 0.87468 0.94640 0.93026 1.46631 1.01385 1.35314 1.51826 1.19966 0.81822 1.14016 1.18944 0.87772 1.25604 1.02010 0.99518 0.99738 1.70041 1.35162 1.24468 1.31459 0.85182 0.80743 0.77653 0.77052 1.18009 1.22047 1.22875 1.17248 0.85844 0.82910 0.75980 1.90709 1.14081 1.87686 1.53560 1.20467 0.91007 0.93387 1.15478 1.22799 0.95444 0.87959 1.03809 1.43193 1.07269 1.05862 1.51684 1.18204 0.96768 0.79195 1.04852 1.21187 0.97162 0.94753 1.02251 1.21443 0.99444 0.93314 0.97113 1.21700 0.92030 1.01854 0.98517 1.21382 1.00844 0.91924 0.97503 1.21177 0.95490 0.96880 1.03036 1.26132 0.93219 0.85985 1.03064 1.70858 1.12762 1.17513 1.18316 0.90633 0.91250 0.93076 0.89489 0.89248 0.88891 0.89987 0.93755 0.97464 0.94790 0.78175 0.83171 0.82184 0.82669 0.82928 0.85044 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.10 7.27 127.77 0.93 5.03 16 2 N -0.59 -23.05 2.89 -850.82 -2.45 -25.50 16 3 C 0.13 4.87 5.27 86.38 0.45 5.33 16 4 C 0.13 5.73 4.50 45.09 0.20 5.93 16 5 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.13 -5.09 7.86 31.25 0.25 -4.85 16 7 C 0.15 7.72 7.47 86.43 0.65 8.36 16 8 N -0.63 -33.10 3.59 -690.86 -2.48 -35.57 16 9 C -0.22 -12.30 10.28 84.03 0.86 -11.43 16 10 H 0.10 5.45 3.78 -2.91 -0.01 5.44 16 11 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 12 N -0.96 -60.11 11.46 21.65 0.25 -59.86 16 13 Si 0.96 46.67 29.55 68.60 2.03 48.70 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 16 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 17 C 0.59 23.05 7.62 86.63 0.66 23.71 16 18 O -0.58 -24.44 16.52 -4.12 -0.07 -24.51 16 19 C -0.08 -2.56 6.73 40.50 0.27 -2.29 16 20 C 0.04 0.98 10.57 83.61 0.88 1.87 16 21 N -0.40 -8.63 2.97 -349.77 -1.04 -9.67 16 22 C 0.10 1.66 6.63 38.08 0.25 1.91 16 23 C -0.13 -1.51 9.46 22.38 0.21 -1.29 16 24 C -0.09 -0.72 10.04 22.25 0.22 -0.50 16 25 C -0.12 -0.89 10.04 22.29 0.22 -0.67 16 26 C -0.10 -0.95 10.04 22.25 0.22 -0.73 16 27 C -0.15 -2.11 9.46 22.38 0.21 -1.90 16 28 C 0.20 4.31 11.88 180.02 2.14 6.45 16 29 N -0.48 -14.39 7.88 -188.63 -1.49 -15.88 16 30 H 0.08 2.47 7.23 -2.39 -0.02 2.45 16 31 H 0.07 2.64 6.46 -2.39 -0.02 2.62 16 32 H 0.05 2.05 6.76 -2.39 -0.02 2.04 16 33 H 0.09 3.30 7.78 -2.39 -0.02 3.28 16 34 H 0.09 3.20 7.52 -2.39 -0.02 3.18 16 35 H 0.09 3.33 8.10 -2.39 -0.02 3.32 16 36 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.04 2.44 7.28 -2.39 -0.02 2.43 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.20 4.60 7.11 -2.91 -0.02 4.58 16 41 H 0.15 1.05 6.74 -2.91 -0.02 1.03 16 42 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 44 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.13 1.82 6.78 -2.91 -0.02 1.80 16 46 H 0.25 2.95 7.03 -2.91 -0.02 2.93 16 Total: -1.00 -79.65 376.27 4.87 -74.78 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.01 Total: 16.61 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 9.11 Total: 30.90 kcal Atomic # 7 Polarization: -139.27 SS G_CDS: -7.21 Total: -146.48 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.07 Total: -24.51 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -79.65 4.87 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085609574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.072 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds